No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G40520 AT5G40520 |
| fragaria_vesca | FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 |
| malus_domestica | MD04G1046800.v1.1 |
| prunus_persica | Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 |
| pyrus_communis | pycom04g04060 |
| rosa_chinensis | RchiOBHm_Chr3g0487611 |
| rosa_laevigata | RLG00000022996 |
| rosa_multiflora | Rmu_sc0012412.1_g000009 |
| rosa_roxburghii | Rroxscaffold_6G00394650 |
| rosa_rugosa | Rorug03G0235000 Rorug03G0235100 Rorug03G0235100 |
| rosa_samantha | Rh3AG283300 Rh3BG319000 Rh3CG317100 Rh3DG315300 |
| rosa_wichuraiana | Rw3G025050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1195 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1937 |
| AccI | GTMKAC | 1 cut(s) | 1539 |
| AciI | CCGC | 3 cut(s) | 521, 585, 1012 |
| AcsI | RAATTY | 4 cut(s) | 486, 1040, 1114, 1573 |
| AfaI | GTAC | 2 cut(s) | 1408, 1888 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1648, 1937 |
| AjnI | CCWGG | 1 cut(s) | 835 |
| AleI | CACNNNNGTG | 1 cut(s) | 1494 |
| AluBI | AGCT | 7 cut(s) | 595, 652, 911, 917, 955, 1529, 1826 |
| AluI | AGCT | 7 cut(s) | 595, 652, 911, 917, 955, 1529, 1826 |
| Alw21I | GWGCWC | 1 cut(s) | 1195 |
| Alw26I | GTCTC | 3 cut(s) | 620, 1579, 1706 |
| AoxI | GGCC | 1 cut(s) | 1966 |
| ApeKI | GCWGC | 6 cut(s) | 233, 581, 781, 784, 1630, 1823 |
| ApoI | RAATTY | 4 cut(s) | 486, 1040, 1114, 1573 |
| AseI | ATTAAT | 1 cut(s) | 720 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 180 |
| AspLEI | GCGC | 1 cut(s) | 1654 |
| AspS9I | GGNCC | 2 cut(s) | 48, 1966 |
| AsuC2I | CCSGG | 1 cut(s) | 611 |
| AsuHPI | GGTGA | 5 cut(s) | 782, 860, 870, 1070, 1406 |
| AvaII | GGWCC | 1 cut(s) | 48 |
| AxyI | CCTNAGG | 1 cut(s) | 238 |
| BbsI | GAAGAC | 2 cut(s) | 15, 198 |
| Bbv12I | GWGCWC | 1 cut(s) | 1195 |
| BbvI | GCAGC | 6 cut(s) | 245, 568, 793, 796, 1617, 1835 |
| BccI | CCATC | 6 cut(s) | 693, 1301, 1432, 1562, 1877, 1957 |
| BceAI | ACGGC | 1 cut(s) | 1676 |
| BciT130I | CCWGG | 1 cut(s) | 837 |
| BciVI | GTATCC | 4 cut(s) | 1006, 1060, 1210, 1609 |
| BclI | TGATCA | 1 cut(s) | 1228 |
| BcnI | CCSGG | 1 cut(s) | 611 |
| BcoDI | GTCTC | 3 cut(s) | 620, 1579, 1706 |
| BfaI | CTAG | 3 cut(s) | 588, 912, 977 |
| BfmI | CTRYAG | 5 cut(s) | 680, 779, 1536, 1543, 1973 |
| BfoI | RGCGCY | 1 cut(s) | 1655 |
| BfuAI | ACCTGC | 1 cut(s) | 1195 |
| BfuI | GTATCC | 4 cut(s) | 1006, 1060, 1210, 1609 |
| BglII | AGATCT | 1 cut(s) | 1370 |
| BisI | GCNGC | 7 cut(s) | 234, 582, 585, 782, 785, 1631, 1824 |
| BlpI | GCTNAGC | 2 cut(s) | 123, 385 |
| BlsI | GCNGC | 7 cut(s) | 235, 583, 586, 783, 786, 1632, 1825 |
| BmcAI | AGTACT | 1 cut(s) | 1408 |
| Bme1390I | CCNGG | 2 cut(s) | 611, 837 |
| Bme18I | GGWCC | 1 cut(s) | 48 |
| BmgT120I | GGNCC | 2 cut(s) | 48, 1966 |
| BmiI | GGNNCC | 1 cut(s) | 50 |
| BmrFI | CCNGG | 2 cut(s) | 611, 837 |
| BmrI | ACTGGG | 2 cut(s) | 1419, 1798 |
| BmsI | GCATC | 5 cut(s) | 220, 738, 1149, 1246, 1642 |
| BmuI | ACTGGG | 2 cut(s) | 1419, 1798 |
| BpiI | GAAGAC | 2 cut(s) | 15, 198 |
| BpmI | CTGGAG | 1 cut(s) | 544 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1869 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 123, 385 |
| BpuEI | CTTGAG | 3 cut(s) | 644, 1509, 1812 |
| BpuMI | CCSGG | 1 cut(s) | 611 |
| BsaBI | GATNNNNATC | 1 cut(s) | 568 |
| BsaJI | CCNNGG | 1 cut(s) | 801 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1648, 1937 |
| Bse1I | ACTGG | 3 cut(s) | 1414, 1612, 1793 |
| Bse21I | CCTNAGG | 1 cut(s) | 238 |
| Bse3DI | GCAATG | 2 cut(s) | 167, 645 |
| Bse8I | GATNNNNATC | 1 cut(s) | 568 |
| BseBI | CCWGG | 1 cut(s) | 837 |
| BseDI | CCNNGG | 1 cut(s) | 801 |
| BseGI | GGATG | 8 cut(s) | 248, 704, 907, 1140, 1156, 1246, 1759, 1798 |
| BseJI | GATNNNNATC | 1 cut(s) | 568 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1648, 1937 |
| BseMI | GCAATG | 2 cut(s) | 167, 645 |
| BseMII | CTCAG | 7 cut(s) | 114, 138, 399, 1208, 1587, 1822, 1883 |
| BseNI | ACTGG | 3 cut(s) | 1414, 1612, 1793 |
| BseRI | GAGGAG | 1 cut(s) | 758 |
| BseXI | GCAGC | 6 cut(s) | 245, 568, 793, 796, 1617, 1835 |
| BsgI | GTGCAG | 1 cut(s) | 1842 |
| BshFI | GGCC | 1 cut(s) | 1968 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1195 |
| BsiSI | CCGG | 1 cut(s) | 611 |
| BslFI | GGGAC | 1 cut(s) | 34 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1648, 1937 |
| BsmAI | GTCTC | 3 cut(s) | 620, 1579, 1706 |
| BsmFI | GGGAC | 1 cut(s) | 34 |
| BsmI | GAATGC | 2 cut(s) | 991, 1178 |
| BsnI | GGCC | 1 cut(s) | 1968 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1195 |
| Bsp143I | GATC | 3 cut(s) | 563, 1228, 1370 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 123, 385 |
| BspACI | CCGC | 3 cut(s) | 521, 585, 1012 |
| BspANI | GGCC | 1 cut(s) | 1968 |
| BspCNI | CTCAG | 7 cut(s) | 115, 139, 398, 1207, 1588, 1821, 1882 |
| BspHI | TCATGA | 1 cut(s) | 1231 |
| BspLI | GGNNCC | 1 cut(s) | 50 |
| BspMAI | CTGCAG | 2 cut(s) | 783, 1547 |
| BspMI | ACCTGC | 1 cut(s) | 1195 |
| BsrDI | GCAATG | 2 cut(s) | 167, 645 |
| BsrI | ACTGG | 3 cut(s) | 1414, 1612, 1793 |
| BssECI | CCNNGG | 1 cut(s) | 801 |
| BssMI | GATC | 3 cut(s) | 563, 1228, 1370 |
| BssT1I | CCWWGG | 1 cut(s) | 801 |
| Bst2UI | CCWGG | 1 cut(s) | 837 |
| Bst4CI | ACNGT | 4 cut(s) | 288, 550, 684, 1496 |
| Bst6I | CTCTTC | 2 cut(s) | 1158, 1641 |
| BstC8I | GCNNGC | 1 cut(s) | 1436 |
| BstF5I | GGATG | 8 cut(s) | 248, 704, 907, 1140, 1156, 1246, 1759, 1798 |
| BstH2I | RGCGCY | 1 cut(s) | 1655 |
| BstHHI | GCGC | 1 cut(s) | 1654 |
| BstKTI | GATC | 3 cut(s) | 566, 1231, 1373 |
| BstMAI | GTCTC | 3 cut(s) | 620, 1579, 1706 |
| BstMBI | GATC | 3 cut(s) | 563, 1228, 1370 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 119, 658, 1660 |
| BstNI | CCWGG | 1 cut(s) | 837 |
| BstNSI | RCATGY | 1 cut(s) | 619 |
| BstSCI | CCNGG | 2 cut(s) | 609, 835 |
| BstSFI | CTRYAG | 5 cut(s) | 680, 779, 1536, 1543, 1973 |
| BstV1I | GCAGC | 6 cut(s) | 245, 568, 793, 796, 1617, 1835 |
| BstV2I | GAAGAC | 2 cut(s) | 15, 198 |
| BstX2I | RGATCY | 1 cut(s) | 1370 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 802 |
| BstYI | RGATCY | 1 cut(s) | 1370 |
| Bsu36I | CCTNAGG | 1 cut(s) | 238 |
| BsuI | GTATCC | 4 cut(s) | 1006, 1060, 1210, 1609 |
| BsuRI | GGCC | 1 cut(s) | 1968 |
| BtsCI | GGATG | 8 cut(s) | 248, 704, 907, 1140, 1156, 1246, 1759, 1798 |
| BtsI | GCAGTG | 2 cut(s) | 852, 1552 |
| BtsIMutI | CAGTG | 3 cut(s) | 852, 1501, 1552 |
| BveI | ACCTGC | 1 cut(s) | 1195 |
| Cac8I | GCNNGC | 1 cut(s) | 1436 |
| CciI | TCATGA | 1 cut(s) | 1231 |
| CfoI | GCGC | 1 cut(s) | 1654 |
| Cfr13I | GGNCC | 2 cut(s) | 48, 1966 |
| CseI | GACGC | 1 cut(s) | 1146 |
| CsiI | ACCWGGT | 1 cut(s) | 835 |
| Csp6I | GTAC | 2 cut(s) | 1407, 1887 |
| CviAII | CATG | 4 cut(s) | 616, 1232, 1589, 1720 |
| CviQI | GTAC | 2 cut(s) | 1407, 1887 |
| DpnI | GATC | 3 cut(s) | 565, 1230, 1372 |
| DpnII | GATC | 3 cut(s) | 563, 1228, 1370 |
| Eam1104I | CTCTTC | 2 cut(s) | 1158, 1641 |
| EarI | CTCTTC | 2 cut(s) | 1158, 1641 |
| Eco130I | CCWWGG | 1 cut(s) | 801 |
| Eco47I | GGWCC | 1 cut(s) | 48 |
| Eco81I | CCTNAGG | 1 cut(s) | 238 |
| EcoRI | GAATTC | 1 cut(s) | 1114 |
| EcoRII | CCWGG | 1 cut(s) | 835 |
| EcoT14I | CCWWGG | 1 cut(s) | 801 |
| EcoT22I | ATGCAT | 2 cut(s) | 1178, 1261 |
| ErhI | CCWWGG | 1 cut(s) | 801 |
| FaeI | CATG | 4 cut(s) | 619, 1235, 1592, 1723 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1638, 1670 |
| FaqI | GGGAC | 1 cut(s) | 34 |
| FatI | CATG | 4 cut(s) | 615, 1231, 1588, 1719 |
| FauI | CCCGC | 1 cut(s) | 528 |
| FauNDI | CATATG | 2 cut(s) | 1512, 1746 |
| FbaI | TGATCA | 1 cut(s) | 1228 |
| FblI | GTMKAC | 1 cut(s) | 1539 |
| Fnu4HI | GCNGC | 7 cut(s) | 234, 582, 585, 782, 785, 1631, 1824 |
| FokI | GGATG | 8 cut(s) | 255, 711, 914, 1127, 1163, 1253, 1766, 1805 |
| Fsp4HI | GCNGC | 7 cut(s) | 234, 582, 585, 782, 785, 1631, 1824 |
| FspBI | CTAG | 3 cut(s) | 588, 912, 977 |
| GlaI | GCGC | 1 cut(s) | 1653 |
| GluI | GCNGC | 7 cut(s) | 234, 582, 585, 782, 785, 1631, 1824 |
| GsuI | CTGGAG | 1 cut(s) | 544 |
| HaeII | RGCGCY | 1 cut(s) | 1655 |
| HaeIII | GGCC | 1 cut(s) | 1968 |
| HapII | CCGG | 1 cut(s) | 611 |
| HgaI | GACGC | 1 cut(s) | 1146 |
| HhaI | GCGC | 1 cut(s) | 1654 |
| Hin1II | CATG | 4 cut(s) | 619, 1235, 1592, 1723 |
| Hin6I | GCGC | 1 cut(s) | 1652 |
| HinP1I | GCGC | 1 cut(s) | 1652 |
| HindIII | AAGCTT | 1 cut(s) | 650 |
| HpaII | CCGG | 1 cut(s) | 611 |
| HphI | GGTGA | 5 cut(s) | 782, 860, 870, 1070, 1406 |
| Hpy166II | GTNNAC | 1 cut(s) | 1540 |
| Hpy188I | TCNGA | 8 cut(s) | 431, 455, 533, 1132, 1197, 1255, 1556, 1811 |
| Hpy8I | GTNNAC | 1 cut(s) | 1540 |
| Hpy99I | CGWCG | 2 cut(s) | 1307, 1316 |
| HpyAV | CCTTC | 1 cut(s) | 1766 |
| HpyCH4III | ACNGT | 4 cut(s) | 288, 550, 684, 1496 |
| HpyCH4IV | ACGT | 1 cut(s) | 1220 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 119, 658, 1660 |
| HpySE526I | ACGT | 1 cut(s) | 1220 |
| Hsp92II | CATG | 4 cut(s) | 619, 1235, 1592, 1723 |
| HspAI | GCGC | 1 cut(s) | 1652 |
| Ksp22I | TGATCA | 1 cut(s) | 1228 |
| Kzo9I | GATC | 3 cut(s) | 563, 1228, 1370 |
| Lsp1109I | GCAGC | 6 cut(s) | 245, 568, 793, 796, 1617, 1835 |
| LweI | GCATC | 5 cut(s) | 220, 738, 1149, 1246, 1642 |
| MabI | ACCWGGT | 1 cut(s) | 835 |
| MaeI | CTAG | 3 cut(s) | 588, 912, 977 |
| MaeII | ACGT | 1 cut(s) | 1220 |
| MalI | GATC | 3 cut(s) | 565, 1230, 1372 |
| MboI | GATC | 3 cut(s) | 563, 1228, 1370 |
| MflI | RGATCY | 1 cut(s) | 1370 |
| MhlI | GDGCHC | 1 cut(s) | 1195 |
| MlyI | GAGTC | 4 cut(s) | 321, 600, 622, 1424 |
| MmeI | TCCRAC | 4 cut(s) | 389, 579, 1023, 1731 |
| Mph1103I | ATGCAT | 2 cut(s) | 1178, 1261 |
| MroXI | GAANNNNTTC | 1 cut(s) | 180 |
| MseI | TTAA | 7 cut(s) | 57, 720, 830, 930, 1656, 1916, 1952 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1380, 1494 |
| MspI | CCGG | 1 cut(s) | 611 |
| MspR9I | CCNGG | 2 cut(s) | 611, 837 |
| Mva1269I | GAATGC | 2 cut(s) | 991, 1178 |
| MvaI | CCWGG | 1 cut(s) | 837 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 119, 658, 1660 |
| NciI | CCSGG | 1 cut(s) | 611 |
| NdeI | CATATG | 2 cut(s) | 1512, 1746 |
| NdeII | GATC | 3 cut(s) | 563, 1228, 1370 |
| NlaIII | CATG | 4 cut(s) | 619, 1235, 1592, 1723 |
| NlaIV | GGNNCC | 1 cut(s) | 50 |
| NsiI | ATGCAT | 2 cut(s) | 1178, 1261 |
| NspI | RCATGY | 1 cut(s) | 619 |
| OliI | CACNNNNGTG | 1 cut(s) | 1494 |
| PagI | TCATGA | 1 cut(s) | 1231 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1308, 1311 |
| PctI | GAATGC | 2 cut(s) | 991, 1178 |
| PdmI | GAANNNNTTC | 1 cut(s) | 180 |
| PflFI | GACNNNGTC | 1 cut(s) | 666 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1937 |
| PfoI | TCCNGGA | 1 cut(s) | 609 |
| PkrI | GCNGC | 7 cut(s) | 235, 583, 586, 783, 786, 1632, 1825 |
| PleI | GAGTC | 4 cut(s) | 320, 600, 622, 1423 |
| PpsI | GAGTC | 4 cut(s) | 320, 600, 622, 1423 |
| PshBI | ATTAAT | 1 cut(s) | 720 |
| Psp6I | CCWGG | 1 cut(s) | 835 |
| PspGI | CCWGG | 1 cut(s) | 835 |
| PspN4I | GGNNCC | 1 cut(s) | 50 |
| PspPI | GGNCC | 2 cut(s) | 48, 1966 |
| PstI | CTGCAG | 2 cut(s) | 783, 1547 |
| PsuI | RGATCY | 1 cut(s) | 1370 |
| PsyI | GACNNNGTC | 1 cut(s) | 666 |
| RsaI | GTAC | 2 cut(s) | 1408, 1888 |
| RsaNI | GTAC | 2 cut(s) | 1407, 1887 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1380, 1494 |
| SaqAI | TTAA | 7 cut(s) | 57, 720, 830, 930, 1656, 1916, 1952 |
| SatI | GCNGC | 7 cut(s) | 234, 582, 585, 782, 785, 1631, 1824 |
| Sau3AI | GATC | 3 cut(s) | 563, 1228, 1370 |
| Sau96I | GGNCC | 2 cut(s) | 48, 1966 |
| ScaI | AGTACT | 1 cut(s) | 1408 |
| SchI | GAGTC | 4 cut(s) | 321, 600, 622, 1424 |
| ScrFI | CCNGG | 2 cut(s) | 611, 837 |
| SduI | GDGCHC | 1 cut(s) | 1195 |
| SexAI | ACCWGGT | 1 cut(s) | 835 |
| SfaNI | GCATC | 5 cut(s) | 220, 738, 1149, 1246, 1642 |
| SfcI | CTRYAG | 5 cut(s) | 680, 779, 1536, 1543, 1973 |
| SinI | GGWCC | 1 cut(s) | 48 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1380, 1494 |
| SmlI | CTYRAG | 3 cut(s) | 623, 1524, 1827 |
| SmoI | CTYRAG | 3 cut(s) | 623, 1524, 1827 |
| SsiI | CCGC | 3 cut(s) | 521, 585, 1012 |
| SspI | AATATT | 2 cut(s) | 527, 1321 |
| SspMI | CTAG | 3 cut(s) | 588, 912, 977 |
| StyD4I | CCNGG | 2 cut(s) | 609, 835 |
| StyI | CCWWGG | 1 cut(s) | 801 |
| TaaI | ACNGT | 4 cut(s) | 288, 550, 684, 1496 |
| TaiI | ACGT | 1 cut(s) | 1223 |
| TaqI | TCGA | 5 cut(s) | 228, 262, 706, 1050, 1341 |
| TatI | WGTACW | 1 cut(s) | 1406 |
| TauI | GCSGC | 1 cut(s) | 587 |
| Tru1I | TTAA | 7 cut(s) | 57, 720, 830, 930, 1656, 1916, 1952 |
| Tru9I | TTAA | 7 cut(s) | 57, 720, 830, 930, 1656, 1916, 1952 |
| TscAI | CASTG | 3 cut(s) | 859, 1501, 1552 |
| TseI | GCWGC | 6 cut(s) | 233, 581, 781, 784, 1630, 1823 |
| TspDTI | ATGAA | 9 cut(s) | 222, 431, 656, 789, 833, 839, 1167, 1605, 1695 |
| TspRI | CASTG | 3 cut(s) | 859, 1501, 1552 |
| Tth111I | GACNNNGTC | 1 cut(s) | 666 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1937 |
| VpaK11BI | GGWCC | 1 cut(s) | 48 |
| VspI | ATTAAT | 1 cut(s) | 720 |
| XapI | RAATTY | 4 cut(s) | 486, 1040, 1114, 1573 |
| XceI | RCATGY | 1 cut(s) | 619 |
| XmiI | GTMKAC | 1 cut(s) | 1539 |
| XmnI | GAANNNNTTC | 1 cut(s) | 180 |
| XspI | CTAG | 3 cut(s) | 588, 912, 977 |
| ZrmI | AGTACT | 1 cut(s) | 1408 |
| Zsp2I | ATGCAT | 2 cut(s) | 1178, 1261 |