Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012412.1

Orthogroup ID

OG0003395

Physical Location & Seq

Genomic Coordinates Reverse (-)

47051 .. 50185

Gene Structure 3135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012412.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1893 bp

atggaaaacgttgtgttctaccaaacggattgcgagaccctctggtctcagattaaatgcaaagagaagcagattcaactcaaacggagcaggtggttgttgggtcttcctctctctgaatctgagcacaacctgtttcaaagtcctgaccttgaacgagattcattgccggaatctttgctcagggaagatgatctgttctatgagactgcaaagtcttctgttcaagcagcctttggagcatgcaatgttgaagcagggaagcaagataatattccaatgctcgacagaaaaagtatatccacagccttgtcatcgccatgtcttgatgatttgactactaaggggcttcaccttatagctactgcacttgcagctggttcagtcaagtttgagaacactcgttgcgagatgaagaagtttatcagagaatctctgcaaataaaatttggaagccaaaataatcatgacgatgagttgggcatttttaagcaactatctcaacatcttagtgacccacaaaatttccgagataaggttgttaccgttctttccagatcacagtctcaacgtcttgctgttagaaaggtactggatggacttgaggacttgccttctgagaccctatttgcaatgagcagaaagcttaaaggagtacaacatttacctcagttacatcaaaagaaaaatacattgtacaaaaagactttgattgatcaattgcggaaaacttgtgacacgatgctttccgaacttggtacaggagatgaactgcaggaatcactagccaaagccatggcagtagcaggcctatcagtgaagttacaaccaggtctccataattcgactgtaacagaatttcaccgattttcacaagagataaagatactgcaggatgatattgcaagggctatttggctagttgaaaaaaaggttagcttgctagagctcgaaaagttgaagactattttaggccgagatgctgaagtatcaaacaggagcttacgatatgcaattaagaaaatgctaactgaatatctcttcgagtgtggtgatatggatacaattccgaagtcattattagaagctcttgatattatcaacatgtcacgaaacaagctgcatagactcttcttaaaggatgaaattgaagaagaggtggaatgtatattgaatgtgagtgctcaggcaaagcagattgtatgggatatgttccccgaccatgagttagatctagactttgctgaggcatatgttgaggaaatggaggatgaagacgatgatgaggatgacgatgatgatggtgatgataggtctagcaatgatgataacaaccataatcatggttcgccacaggaacaaggaatatctggaagtgacagatctcactctgatgattcacattatgaggatgaaagcactggggaaacaatgttctccaatcaaggaacttctcatgatttcaatggtattagacgagggtttcctgggacttctactgagagacatgaacctgaacatgacactggaatggatacagatgaccctttgcatgtcgagccagagccagatgatgtgcataaacaaaccacttgtaaccaataccttgcaattcaagaagtgtctgataagacaagcatgatagcccatgatcttgttggtcatatgttggaggagtttgcacagaaagatggcttggatttggactgggatgatacattatatctgaaaggtgattgtgcaactcgagaagattcaggagtggtagaagaaaggcagacattgtctcaggagaacaaagggggttctgtaattgttagtgtaattgaggatctaataccttcatttccaaagagtggaatcgaagcattaaggaacttggtgggcaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

630

Amino Acids

71.25

Weight (kDa)

4.73

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40520 AT5G40520
fragaria_vesca	FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220
malus_domestica	MD04G1046800.v1.1
prunus_persica	Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1
pyrus_communis	pycom04g04060
rosa_chinensis	RchiOBHm_Chr3g0487611
rosa_laevigata	RLG00000022996
rosa_multiflora	Rmu_sc0012412.1_g000009
rosa_roxburghii	Rroxscaffold_6G00394650
rosa_rugosa	Rorug03G0235000 Rorug03G0235100 Rorug03G0235100
rosa_samantha	Rh3AG283300 Rh3BG319000 Rh3CG317100 Rh3DG315300
rosa_wichuraiana	Rw3G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	81
AasI	GACNNNNNNGTC	2 cut(s)	43, 214
Acc36I	ACCTGC	1 cut(s)	81
AccB7I	CCANNNNNTGG	1 cut(s)	1856
AciI	CCGC	1 cut(s)	724
AclI	AACGTT	1 cut(s)	9
AclWI	GGATC	1 cut(s)	1839
AcsI	RAATTY	3 cut(s)	446, 523, 857
AcuI	CTGAAG	1 cut(s)	1005
AfaI	GTAC	4 cut(s)	591, 657, 698, 760
AfiI	CCNNNNNNNGG	2 cut(s)	535, 1856
AflIII	ACRYGT	1 cut(s)	1104
AjnI	CCWGG	2 cut(s)	829, 1486
AjuI	GAANNNNNNNTTGG	2 cut(s)	1679, 1711
AloI	GAACNNNNNNTCC	2 cut(s)	1418, 1450
AluBI	AGCT	8 cut(s)	362, 377, 646, 939, 949, 1002, 1088, 1120
AluI	AGCT	8 cut(s)	362, 377, 646, 939, 949, 1002, 1088, 1120
Alw21I	GWGCWC	3 cut(s)	129, 951, 1186
Alw26I	GTCTC	8 cut(s)	29, 51, 200, 570, 614, 839, 1498, 1791
AlwI	GGATC	1 cut(s)	1839
Ama87I	CYCGRG	1 cut(s)	1746
AoxI	GGCC	2 cut(s)	808, 973
ApeKI	GCWGC	3 cut(s)	230, 374, 1120
ApoI	RAATTY	3 cut(s)	446, 523, 857
AsuHPI	GGTGA	5 cut(s)	344, 854, 1064, 1316, 1745
AvaI	CYCGRG	1 cut(s)	1746
BanII	GRGCYC	1 cut(s)	951
BbsI	GAAGAC	4 cut(s)	98, 210, 968, 1281
Bbv12I	GWGCWC	3 cut(s)	129, 951, 1186
BbvCI	CCTCAGC	1 cut(s)	1245
BbvI	GCAGC	3 cut(s)	242, 386, 1107
BccI	CCATC	3 cut(s)	590, 1295, 1685
BciT130I	CCWGG	2 cut(s)	831, 1488
BciVI	GTATCC	2 cut(s)	1054, 1528
BclI	TGATCA	1 cut(s)	715
BcoDI	GTCTC	8 cut(s)	29, 51, 200, 570, 614, 839, 1498, 1791
BfaI	CTAG	5 cut(s)	785, 920, 944, 1235, 1317
BfmI	CTRYAG	2 cut(s)	773, 890
BfuAI	ACCTGC	1 cut(s)	81
BfuI	GTATCC	2 cut(s)	1054, 1528
BglII	AGATCT	2 cut(s)	1231, 1382
BisI	GCNGC	3 cut(s)	231, 375, 1121
BlsI	GCNGC	3 cut(s)	232, 376, 1122
Bme1390I	CCNGG	2 cut(s)	831, 1488
BmeT110I	CYCGRG	1 cut(s)	1746
BmrFI	CCNGG	2 cut(s)	831, 1488
BmrI	ACTGGG	2 cut(s)	1431, 1717
BmsI	GCATC	2 cut(s)	732, 970
BmuI	ACTGGG	2 cut(s)	1431, 1717
BpiI	GAAGAC	4 cut(s)	98, 210, 968, 1281
Bpu10I	CCTNAGC	3 cut(s)	182, 1185, 1245
BpuEI	CTTGAG	1 cut(s)	623
BsaI	GGTCTC	4 cut(s)	29, 51, 614, 839
BsaJI	CCNNGG	2 cut(s)	795, 1487
BsaXI	ACNNNNNCTCC	2 cut(s)	819, 849
Bsc4I	CCNNNNNNNGG	2 cut(s)	535, 1856
Bse1I	ACTGG	4 cut(s)	597, 1426, 1531, 1712
Bse3DI	GCAATG	4 cut(s)	164, 253, 639, 1327
BseBI	CCWGG	2 cut(s)	831, 1488
BseDI	CCNNGG	2 cut(s)	795, 1487
BseGI	GGATG	7 cut(s)	601, 901, 1147, 1276, 1294, 1417, 1717
BseLI	CCNNNNNNNGG	2 cut(s)	535, 1856
BseMI	GCAATG	4 cut(s)	164, 253, 639, 1327
BseMII	CTCAG	9 cut(s)	62, 114, 196, 609, 683, 1199, 1236, 1491, 1802
BseNI	ACTGG	4 cut(s)	597, 1426, 1531, 1712
BseRI	GAGGAG	1 cut(s)	1688
BseXI	GCAGC	3 cut(s)	242, 386, 1107
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	2 cut(s)	810, 975
BsiHKAI	GWGCWC	3 cut(s)	129, 951, 1186
BsiHKCI	CYCGRG	1 cut(s)	1746
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	1504
BslI	CCNNNNNNNGG	2 cut(s)	535, 1856
BsmAI	GTCTC	8 cut(s)	29, 51, 200, 570, 614, 839, 1498, 1791
BsmFI	GGGAC	1 cut(s)	1504
BsnI	GGCC	2 cut(s)	810, 975
Bso31I	GGTCTC	4 cut(s)	29, 51, 614, 839
BsoBI	CYCGRG	1 cut(s)	1746
Bsp1286I	GDGCHC	3 cut(s)	129, 951, 1186
Bsp1407I	TGTACA	1 cut(s)	696
Bsp143I	GATC	7 cut(s)	193, 557, 715, 1231, 1382, 1651, 1831
Bsp19I	CCATGG	1 cut(s)	795
BspACI	CCGC	1 cut(s)	724
BspANI	GGCC	2 cut(s)	810, 975
BspCNI	CTCAG	9 cut(s)	61, 115, 195, 610, 682, 1198, 1237, 1492, 1801
BspHI	TCATGA	2 cut(s)	466, 1456
BspMAI	CTGCAG	2 cut(s)	777, 894
BspMI	ACCTGC	1 cut(s)	81
BspPI	GGATC	1 cut(s)	1839
BspTNI	GGTCTC	4 cut(s)	29, 51, 614, 839
BsrDI	GCAATG	4 cut(s)	164, 253, 639, 1327
BsrGI	TGTACA	1 cut(s)	696
BsrI	ACTGG	4 cut(s)	597, 1426, 1531, 1712
BssECI	CCNNGG	2 cut(s)	795, 1487
BssMI	GATC	7 cut(s)	193, 557, 715, 1231, 1382, 1651, 1831
BssT1I	CCWWGG	1 cut(s)	795
Bst2UI	CCWGG	2 cut(s)	831, 1488
Bst4CI	ACNGT	3 cut(s)	547, 564, 850
Bst6I	CTCTTC	3 cut(s)	1046, 1136, 1149
BstAUI	TGTACA	1 cut(s)	696
BstC8I	GCNNGC	3 cut(s)	244, 808, 941
BstDSI	CCRYGG	1 cut(s)	795
BstF5I	GGATG	7 cut(s)	601, 901, 1147, 1276, 1294, 1417, 1717
BstKTI	GATC	7 cut(s)	196, 560, 718, 1234, 1385, 1654, 1834
BstMAI	GTCTC	8 cut(s)	29, 51, 200, 570, 614, 839, 1498, 1791
BstMBI	GATC	7 cut(s)	193, 557, 715, 1231, 1382, 1651, 1831
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 374, 1558
BstNI	CCWGG	2 cut(s)	831, 1488
BstNSI	RCATGY	3 cut(s)	246, 1108, 1556
BstSCI	CCNGG	2 cut(s)	829, 1486
BstSFI	CTRYAG	2 cut(s)	773, 890
BstV1I	GCAGC	3 cut(s)	242, 386, 1107
BstV2I	GAAGAC	4 cut(s)	98, 210, 968, 1281
BstX2I	RGATCY	3 cut(s)	1231, 1382, 1831
BstXI	CCANNNNNNTGG	2 cut(s)	796, 1343
BstYI	RGATCY	3 cut(s)	1231, 1382, 1831
BsuI	GTATCC	2 cut(s)	1054, 1528
BsuRI	GGCC	2 cut(s)	810, 975
BtgI	CCRYGG	1 cut(s)	795
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	7 cut(s)	601, 901, 1147, 1276, 1294, 1417, 1717
BtsIMutI	CAGTG	3 cut(s)	822, 1419, 1524
BveI	ACCTGC	1 cut(s)	81
Cac8I	GCNNGC	3 cut(s)	244, 808, 941
CciI	TCATGA	2 cut(s)	466, 1456
CsiI	ACCWGGT	1 cut(s)	829
Csp6I	GTAC	4 cut(s)	590, 656, 697, 759
CviQI	GTAC	4 cut(s)	590, 656, 697, 759
DpnI	GATC	7 cut(s)	195, 559, 717, 1233, 1384, 1653, 1833
DpnII	GATC	7 cut(s)	193, 557, 715, 1231, 1382, 1651, 1831
DrdI	GACNNNNNNGTC	2 cut(s)	43, 214
DseDI	GACNNNNNNGTC	2 cut(s)	43, 214
Eam1104I	CTCTTC	3 cut(s)	1046, 1136, 1149
EarI	CTCTTC	3 cut(s)	1046, 1136, 1149
Ecl136II	GAGCTC	1 cut(s)	949
Eco130I	CCWWGG	1 cut(s)	795
Eco147I	AGGCCT	1 cut(s)	810
Eco24I	GRGCYC	1 cut(s)	951
Eco31I	GGTCTC	4 cut(s)	29, 51, 614, 839
Eco53kI	GAGCTC	1 cut(s)	949
Eco57I	CTGAAG	1 cut(s)	1005
Eco88I	CYCGRG	1 cut(s)	1746
EcoICRI	GAGCTC	1 cut(s)	949
EcoRII	CCWGG	2 cut(s)	829, 1486
EcoT14I	CCWWGG	1 cut(s)	795
EcoT38I	GRGCYC	1 cut(s)	951
ErhI	CCWWGG	1 cut(s)	795
FalI	AAGNNNNNCTT	2 cut(s)	923, 955
FaqI	GGGAC	1 cut(s)	1504
FauNDI	CATATG	2 cut(s)	1252, 1665
FbaI	TGATCA	1 cut(s)	715
Fnu4HI	GCNGC	3 cut(s)	231, 375, 1121
FokI	GGATG	7 cut(s)	608, 908, 1154, 1283, 1301, 1424, 1724
FriOI	GRGCYC	1 cut(s)	951
Fsp4HI	GCNGC	3 cut(s)	231, 375, 1121
FspBI	CTAG	5 cut(s)	785, 920, 944, 1235, 1317
GluI	GCNGC	3 cut(s)	231, 375, 1121
HaeIII	GGCC	2 cut(s)	810, 975
HapII	CCGG	1 cut(s)	170
HindIII	AAGCTT	1 cut(s)	644
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	5 cut(s)	344, 854, 1064, 1316, 1745
HpyAV	CCTTC	2 cut(s)	624, 1851
HpyCH4III	ACNGT	3 cut(s)	547, 564, 850
HpyCH4IV	ACGT	2 cut(s)	9, 571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 374, 1558
HpySE526I	ACGT	2 cut(s)	9, 571
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	7 cut(s)	193, 557, 715, 1231, 1382, 1651, 1831
LmnI	GCTCC	3 cut(s)	87, 239, 999
Lsp1109I	GCAGC	3 cut(s)	242, 386, 1107
LweI	GCATC	2 cut(s)	732, 970
MabI	ACCWGGT	1 cut(s)	829
MaeI	CTAG	5 cut(s)	785, 920, 944, 1235, 1317
MaeII	ACGT	2 cut(s)	9, 571
MaeIII	GTNAC	9 cut(s)	512, 541, 672, 734, 822, 850, 1107, 1376, 1595
MalI	GATC	7 cut(s)	195, 559, 717, 1233, 1384, 1653, 1833
MboI	GATC	7 cut(s)	193, 557, 715, 1231, 1382, 1651, 1831
MfeI	CAATTG	1 cut(s)	719
MflI	RGATCY	3 cut(s)	1231, 1382, 1831
MhlI	GDGCHC	3 cut(s)	129, 951, 1186
MlyI	GAGTC	1 cut(s)	1122
MmeI	TCCRAC	1 cut(s)	1650
MseI	TTAA	6 cut(s)	54, 489, 648, 1017, 1136, 1871
MslI	CAYNNNNRTG	6 cut(s)	319, 471, 510, 1341, 1392, 1529
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	831, 1488
MunI	CAATTG	1 cut(s)	719
MvaI	CCWGG	2 cut(s)	831, 1488
MwoI	GCNNNNNNNGC	3 cut(s)	239, 374, 1558
NcoI	CCATGG	1 cut(s)	795
NdeI	CATATG	2 cut(s)	1252, 1665
NdeII	GATC	7 cut(s)	193, 557, 715, 1231, 1382, 1651, 1831
NmeAIII	GCCGAG	1 cut(s)	1001
NmuCI	GTSAC	4 cut(s)	512, 734, 1107, 1376
NspI	RCATGY	3 cut(s)	246, 1108, 1556
PaeI	GCATGC	1 cut(s)	246
PaeR7I	CTCGAG	1 cut(s)	1746
PagI	TCATGA	2 cut(s)	466, 1456
PaqCI	CACCTGC	1 cut(s)	81
PceI	AGGCCT	1 cut(s)	810
PciI	ACATGT	1 cut(s)	1104
PfeI	GAWTC	9 cut(s)	73, 119, 161, 173, 431, 779, 1397, 1754, 1860
PflFI	GACNNNGTC	1 cut(s)	1783
PflMI	CCANNNNNTGG	1 cut(s)	1856
PkrI	GCNGC	3 cut(s)	232, 376, 1122
PleI	GAGTC	1 cut(s)	1122
PpsI	GAGTC	1 cut(s)	1122
PscI	ACATGT	1 cut(s)	1104
Psp124BI	GAGCTC	1 cut(s)	951
Psp1406I	AACGTT	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	829, 1486
PspGI	CCWGG	2 cut(s)	829, 1486
PstI	CTGCAG	2 cut(s)	777, 894
PsuI	RGATCY	3 cut(s)	1231, 1382, 1831
PsyI	GACNNNGTC	1 cut(s)	1783
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	4 cut(s)	591, 657, 698, 760
RsaNI	GTAC	4 cut(s)	590, 656, 697, 759
RseI	CAYNNNNRTG	6 cut(s)	319, 471, 510, 1341, 1392, 1529
SacI	GAGCTC	1 cut(s)	951
SaqAI	TTAA	6 cut(s)	54, 489, 648, 1017, 1136, 1871
SatI	GCNGC	3 cut(s)	231, 375, 1121
Sau3AI	GATC	7 cut(s)	193, 557, 715, 1231, 1382, 1651, 1831
SchI	GAGTC	1 cut(s)	1122
ScrFI	CCNGG	2 cut(s)	831, 1488
SduI	GDGCHC	3 cut(s)	129, 951, 1186
SexAI	ACCWGGT	1 cut(s)	829
SfaNI	GCATC	2 cut(s)	732, 970
SfcI	CTRYAG	2 cut(s)	773, 890
Sfr274I	CTCGAG	1 cut(s)	1746
SlaI	CTCGAG	1 cut(s)	1746
SmiMI	CAYNNNNRTG	6 cut(s)	319, 471, 510, 1341, 1392, 1529
SmlI	CTYRAG	2 cut(s)	602, 1746
SmoI	CTYRAG	2 cut(s)	602, 1746
SphI	GCATGC	1 cut(s)	246
SseBI	AGGCCT	1 cut(s)	810
SsiI	CCGC	1 cut(s)	724
SspI	AATATT	1 cut(s)	274
SspMI	CTAG	5 cut(s)	785, 920, 944, 1235, 1317
SstI	GAGCTC	1 cut(s)	951
StuI	AGGCCT	1 cut(s)	810
StyD4I	CCNGG	2 cut(s)	829, 1486
StyI	CCWWGG	1 cut(s)	795
TaaI	ACNGT	3 cut(s)	547, 564, 850
TaiI	ACGT	2 cut(s)	12, 574
TaqI	TCGA	7 cut(s)	285, 845, 951, 1044, 1557, 1747, 1863
TatI	WGTACW	2 cut(s)	655, 696
TfiI	GAWTC	9 cut(s)	73, 119, 161, 173, 431, 779, 1397, 1754, 1860
Tru1I	TTAA	6 cut(s)	54, 489, 648, 1017, 1136, 1871
Tru9I	TTAA	6 cut(s)	54, 489, 648, 1017, 1136, 1871
TscAI	CASTG	3 cut(s)	822, 1426, 1531
TseFI	GTSAC	4 cut(s)	512, 734, 1107, 1376
TseI	GCWGC	3 cut(s)	230, 374, 1120
Tsp45I	GTSAC	4 cut(s)	512, 734, 1107, 1376
TspDTI	ATGAA	8 cut(s)	153, 428, 783, 1158, 1287, 1428, 1524, 1833
TspGWI	ACGGA	2 cut(s)	41, 100
TspRI	CASTG	3 cut(s)	822, 1426, 1531
Tth111I	GACNNNGTC	1 cut(s)	1783
Van91I	CCANNNNNTGG	1 cut(s)	1856
XapI	RAATTY	3 cut(s)	446, 523, 857
XbaI	TCTAGA	1 cut(s)	1234
XceI	RCATGY	3 cut(s)	246, 1108, 1556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1655
XhoI	CTCGAG	1 cut(s)	1746
XspI	CTAG	5 cut(s)	785, 920, 944, 1235, 1317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.