Rorug03G0235100

NC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001986
Physical Location & Seq
Forward (+)
21725443 .. 21731566
6124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0235100.1

Sequence Viewer

Length: 477 bp
ATGGGGACGAGAGAGGTGTATGAACAGAAGCTAAGGAGTGGGAATCTGCATCATGATCCTACCATGAAACCAGGCCTCGGCACCCCTCGCTGCCCGCGCTGTCTCTCTCTCCTTGACCATGATTCGGGAAAGGGTGAATGGACTATCACTCCTGTTCTTCATGACGCCACTGCTGTTGCTGGCTCAGGTATTGGTGGAATGCTTAGTGCAATTCATGGTTTCAATACAGGGATCCCGTACCTTCAGAATCGCTTAAAAGGACCAAAGTGGCTTCCTTTCTTAGTTGGGCTTCCTCCTCTGCTACTCTTTTCGGGTGCCAGTGCTGCATTTGGAGGTTATGCACTTCCAAAGTTTGCTCAACTCACGGTGACTTCGTATTATGCCACCTCGAGTGCCTCACATTACGGGATTTCGCTTCTTACTCGACATATTGAAGAGACTCATACTTCCCGCTCTCAGCAAGAAAGACTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

158

Amino Acids

17.06

Weight (kDa)

9.23

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 80, 314
AccBSI CCGCTC 1 cut(s) 453
AccII CGCG 1 cut(s) 97
AciI CCGC 2 cut(s) 95, 451
AclWI GGATC 3 cut(s) 50, 226, 239
AcuI CTGAAG 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 2 cut(s) 77, 124
AgsI TTSAA 2 cut(s) 223, 434
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw26I GTCTC 2 cut(s) 107, 431
AlwI GGATC 3 cut(s) 50, 226, 239
Ama87I CYCGRG 1 cut(s) 388
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 2 cut(s) 90, 323
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 146, 379
AvaI CYCGRG 1 cut(s) 388
AvaII GGWCC 1 cut(s) 260
BamHI GGATCC 1 cut(s) 231
BanI GGYRCC 2 cut(s) 80, 314
BbvI GCAGC 2 cut(s) 77, 310
BciT130I CCWGG 1 cut(s) 72
BcoDI GTCTC 2 cut(s) 107, 431
BisI GCNGC 2 cut(s) 91, 324
BlsI GCNGC 2 cut(s) 92, 325
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 260
BmeT110I CYCGRG 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 3 cut(s) 82, 233, 316
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 58
Bpu10I CCTNAGC 2 cut(s) 32, 184
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 124
Bse1I ACTGG 1 cut(s) 318
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 76
BseLI CCNNNNNNNGG 2 cut(s) 77, 124
BseMII CTCAG 2 cut(s) 198, 470
BseNI ACTGG 1 cut(s) 318
BseRI GAGGAG 1 cut(s) 285
BseXI GCAGC 2 cut(s) 77, 310
Bsh1236I CGCG 1 cut(s) 97
BshFI GGCC 1 cut(s) 75
BshNI GGYRCC 2 cut(s) 80, 314
BsiHKCI CYCGRG 1 cut(s) 388
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 2 cut(s) 77, 124
BsmAI GTCTC 2 cut(s) 107, 431
BsmFI GGGAC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 204
BsnI GGCC 1 cut(s) 75
BsoBI CYCGRG 1 cut(s) 388
Bsp143I GATC 2 cut(s) 55, 231
BspACI CCGC 2 cut(s) 95, 451
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 2 cut(s) 197, 469
BspFNI CGCG 1 cut(s) 97
BspHI TCATGA 2 cut(s) 52, 160
BspLI GGNNCC 3 cut(s) 82, 233, 316
BspPI GGATC 3 cut(s) 50, 226, 239
BspT107I GGYRCC 2 cut(s) 80, 314
BsrBI CCGCTC 1 cut(s) 453
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 2 cut(s) 55, 231
BssNI GRCGYC 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 429
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 95, 181
BstDEI CTNAG 5 cut(s) 32, 184, 203, 280, 456
BstFNI CGCG 1 cut(s) 97
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 2 cut(s) 58, 234
BstMAI GTCTC 2 cut(s) 107, 431
BstMBI GATC 2 cut(s) 55, 231
BstMWI GCNNNNNNNGC 3 cut(s) 87, 96, 323
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 2 cut(s) 77, 310
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 168, 325
Cac8I GCNNGC 2 cut(s) 95, 181
CciI TCATGA 2 cut(s) 52, 160
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 260
CseI GACGC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 238
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 5 cut(s) 53, 64, 119, 161, 215
CviJI RGCY 5 cut(s) 31, 75, 183, 271, 289
CviKI_1 RGCY 5 cut(s) 31, 75, 183, 271, 289
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 5 cut(s) 32, 184, 203, 280, 456
DpnI GATC 2 cut(s) 57, 233
DpnII GATC 2 cut(s) 55, 231
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
Eco147I AGGCCT 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 227
Eco88I CYCGRG 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 70
FaeI CATG 5 cut(s) 56, 67, 122, 164, 218
FaqI GGGAC 1 cut(s) 19
FatI CATG 5 cut(s) 52, 63, 118, 160, 214
FauI CCCGC 2 cut(s) 102, 458
Fnu4HI GCNGC 2 cut(s) 91, 324
Fsp4HI GCNGC 2 cut(s) 91, 324
GlaI GCGC 1 cut(s) 98
GluI GCNGC 2 cut(s) 91, 324
HaeIII GGCC 1 cut(s) 75
HgaI GACGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 5 cut(s) 56, 67, 122, 164, 218
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 5 cut(s) 43, 122, 247, 439, 468
HphI GGTGA 2 cut(s) 146, 379
Hpy188I TCNGA 2 cut(s) 246, 473
Hpy188III TCNNGA 3 cut(s) 53, 126, 161
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4V TGCA 4 cut(s) 49, 209, 326, 341
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 96, 323
HpyF3I CTNAG 5 cut(s) 32, 184, 203, 280, 456
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 5 cut(s) 56, 67, 122, 164, 218
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 2 cut(s) 55, 231
LpnPI CCDG 7 cut(s) 57, 84, 165, 165, 171, 213, 331
Lsp1109I GCAGC 2 cut(s) 77, 310
LweI GCATC 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 367
MalI GATC 2 cut(s) 57, 233
MbiI CCGCTC 1 cut(s) 453
MboI GATC 2 cut(s) 55, 231
MboII GAAGA 2 cut(s) 149, 446
MflI RGATCY 1 cut(s) 231
MluCI AATT 1 cut(s) 210
MlyI GAGTC 2 cut(s) 433, 462
MnlI CCTC 8 cut(s) 7, 86, 96, 303, 306, 326, 397, 406
MseI TTAA 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 204
MvaI CCWGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 3 cut(s) 87, 96, 323
NdeII GATC 2 cut(s) 55, 231
NlaIII CATG 5 cut(s) 56, 67, 122, 164, 218
NlaIV GGNNCC 3 cut(s) 82, 233, 316
NmeAIII GCCGAG 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 367
PaeR7I CTCGAG 1 cut(s) 388
PagI TCATGA 2 cut(s) 52, 160
PceI AGGCCT 1 cut(s) 75
PcsI WCGNNNNNNNCGW 1 cut(s) 371
PctI GAATGC 1 cut(s) 204
PfeI GAWTC 3 cut(s) 43, 122, 247
PkrI GCNGC 2 cut(s) 92, 325
PleI GAGTC 2 cut(s) 433, 462
PpsI GAGTC 2 cut(s) 433, 462
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 3 cut(s) 82, 233, 316
PspPI GGNCC 1 cut(s) 260
PspXI VCTCGAGB 1 cut(s) 388
PsuI RGATCY 1 cut(s) 231
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 2 cut(s) 91, 324
Sau3AI GATC 2 cut(s) 55, 231
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 2 cut(s) 433, 462
ScrFI CCNGG 1 cut(s) 72
SetI ASST 6 cut(s) 18, 33, 190, 243, 337, 389
SfaNI GCATC 1 cut(s) 58
Sfr274I CTCGAG 1 cut(s) 388
SinI GGWCC 1 cut(s) 260
SlaI CTCGAG 1 cut(s) 388
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
Sse9I AATT 1 cut(s) 210
SseBI AGGCCT 1 cut(s) 75
SsiI CCGC 2 cut(s) 95, 451
StuI AGGCCT 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 367
TaqI TCGA 2 cut(s) 389, 424
TasI AATT 1 cut(s) 210
TfiI GAWTC 3 cut(s) 43, 122, 247
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 2 cut(s) 175, 325
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 2 cut(s) 90, 323
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 4 cut(s) 36, 80, 149, 203
TspRI CASTG 2 cut(s) 175, 325
VpaK11BI GGWCC 1 cut(s) 260
XhoI CTCGAG 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.