Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001986

Physical Location & Seq

Genomic Coordinates Forward (+)

16348652 .. 16352232

Gene Structure 3581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG087900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGATTGAAGGAGCTTGCTTTCCTGAAGGTTATTGAGGAGGGTCCAATAACTGTAGCTCCACCAGAGACAATTAGAAAGTTGGAGCAGGCAGCTCAAAGGCTAGCTAAAAGTGTTAACTATGTTGGAGCAGCTAGTGTTGAGTATCTGTACAGTATGGACACTGGCGAGTACTATTTCTTAGAGTTGAACCCTCGGTTGCAGGTGGAGCACCCGGTCACTGAGTGGATAGCAGAAATAAATCTGCCAGCAGCCCAAGTTGCAGCAAGAATTGGGTTGTGCATATTGAACGGGGAGAGGTATGAAGTGGTTTCAAAGATCTGGCATATAGAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003989 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0016020 GO:0016053 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022414 GO:0022622 GO:0030497 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944 GO:0072330 GO:0090421 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00254 ko00620 ko00640 ko01100 ko01110 ko01212 ko04152 ko04910 ko04922 map00061 map00254 map00620 map00640 map01100 map01110 map01212 map04152 map04910 map04922

Pfam Domains

Protein Families

ACC_central Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2 Carboxyl_trans

Protein Analysis

112

Amino Acids

12.67

Weight (kDa)

5.18

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSase_L_D2	PF02786	10 - 93	1.3e-17	Carbamoyl-phosphate synthase L chain, ATP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36160 AT1G36160 AT1G36180 AT1G36180 AT1G36180
fragaria_vesca	FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000
malus_domestica	MD08G1178000.v1.1 MD15G1363500.v1.1
prunus_persica	Prupe.1G512000_v2.0.a1 Prupe.1G512000_v2.0.a1 Prupe.1G512000_v2.0.a1
pyrus_communis	pycom08g15250 pycom15g32670
rosa_chinensis	RchiOBHm_Chr2g0140771 RchiOBHm_Chr2g0144971 RchiOBHm_Chr7g0239931
rosa_laevigata	RLG00000000716 RLG00000013564 RLG00000020589
rosa_multiflora	Rmu_co8457723.1_g000001 Rmu_sc0000540.1_g000024 Rmu_sc0001684.1_g000001 Rmu_sc0006326.1_g000027 Rmu_sc0041871.1_g000001 Rmu_sc0041872.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220610
rosa_rugosa	Rorug03G0235100 Rorug07G0331300 Rorug07G0331300
rosa_samantha	Rh1CG081500 Rh1DG087900 Rh4AG110300 Rh4DG033300 Rh5BG555900 Rh5CG578700 Rh5DG265800 Rh7AG485000 Rh7BG458000 Rh7DG470600
rosa_wichuraiana	Rw7G040680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
Acc36I	ACCTGC	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	225
AfaI	GTAC	2 cut(s)	152, 173
AgsI	TTSAA	4 cut(s)	10, 190, 289, 315
AluBI	AGCT	5 cut(s)	16, 59, 95, 107, 134
AluI	AGCT	5 cut(s)	16, 59, 95, 107, 134
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	62
ApeKI	GCWGC	4 cut(s)	92, 131, 251, 263
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	215
AsuNHI	GCTAGC	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	4 cut(s)	104, 143, 263, 275
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	2 cut(s)	104, 135
BfmI	CTRYAG	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	193
BglII	AGATCT	1 cut(s)	318
BisI	GCNGC	4 cut(s)	93, 132, 252, 264
BlsI	GCNGC	4 cut(s)	94, 133, 253, 265
BmcAI	AGTACT	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	215
BmtI	GCTAGC	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	194
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bse1I	ACTGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	4 cut(s)	104, 143, 263, 275
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	193
BspOI	GCTAGC	1 cut(s)	107
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	1 cut(s)	318
Bst4CI	ACNGT	2 cut(s)	55, 155
BstAUI	TGTACA	1 cut(s)	150
BstC8I	GCNNGC	4 cut(s)	18, 90, 105, 249
BstDEI	CTNAG	2 cut(s)	181, 222
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 260
BstSCI	CCNGG	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	4 cut(s)	104, 143, 263, 275
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BtsIMutI	CAGTG	2 cut(s)	162, 219
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	4 cut(s)	18, 90, 105, 249
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	151, 172
CviJI	RGCY	7 cut(s)	16, 59, 95, 103, 107, 134, 254
CviKI_1	RGCY	7 cut(s)	16, 59, 95, 103, 107, 134, 254
CviQI	GTAC	2 cut(s)	151, 172
DdeI	CTNAG	2 cut(s)	181, 222
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
DraIII	CACNNNGTG	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	47
FaiI	YATR	6 cut(s)	123, 158, 284, 303, 327, 329
Fnu4HI	GCNGC	4 cut(s)	93, 132, 252, 264
Fsp4HI	GCNGC	4 cut(s)	93, 132, 252, 264
FspBI	CTAG	2 cut(s)	104, 135
GluI	GCNGC	4 cut(s)	93, 132, 252, 264
HapII	CCGG	1 cut(s)	215
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HpaI	GTTAAC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	2 cut(s)	4, 22
HpyCH4III	ACNGT	2 cut(s)	55, 155
HpyCH4V	TGCA	3 cut(s)	202, 263, 282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 260
HpyF3I	CTNAG	2 cut(s)	181, 222
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	5 cut(s)	13, 64, 85, 128, 208
LpnPI	CCDG	8 cut(s)	38, 74, 78, 150, 188, 228, 261, 307
Lsp1109I	GCAGC	4 cut(s)	104, 143, 263, 275
MaeI	CTAG	2 cut(s)	104, 135
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	2 cut(s)	72, 270
MmeI	TCCRAC	2 cut(s)	63, 106
MnlI	CCTC	5 cut(s)	31, 34, 204, 291, 327
MseI	TTAA	1 cut(s)	117
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	208, 260
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	1 cut(s)	318
NheI	GCTAGC	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	217
PaqCI	CACCTGC	1 cut(s)	193
PkrI	GCNGC	4 cut(s)	94, 133, 253, 265
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	318
RsaI	GTAC	2 cut(s)	152, 173
RsaNI	GTAC	2 cut(s)	151, 172
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	4 cut(s)	93, 132, 252, 264
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	9 cut(s)	18, 33, 61, 97, 109, 136, 207, 302, 338
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	44
Sse9I	AATT	2 cut(s)	72, 270
SspMI	CTAG	2 cut(s)	104, 135
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	55, 155
TasI	AATT	2 cut(s)	72, 270
TatI	WGTACW	2 cut(s)	150, 171
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	169, 226
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	4 cut(s)	92, 131, 251, 263
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	169, 226
VpaK11BI	GGWCC	1 cut(s)	44
XspI	CTAG	2 cut(s)	104, 135
ZrmI	AGTACT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.