Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001986

Physical Location & Seq

Genomic Coordinates Reverse (-)

33224726 .. 33226858

Gene Structure 2133 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013564

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAGGACGTCATACGACGTCGCACCGCCACAACACATACCGCAATAGGTTACTCTAGCACAAGGAGCTCGGCTCCCGAGTCCATGCAGATTATTGAGGAGGGTCCAATAACTGTAGCTCCACTAGAGACAATTAGAAAGTTGGAACAGGCAGCTCGAAGGCTGGCTAAAAGTGTTAGCTATGTTGGAGCAGCTACTGTTGAGTATCTGTACAGTATGGACACTGGCAAGTACTATTTCTTAGAGTTGAATCCTCAATTGCAGAAGTTCAATCTTCACTTAATGCTTAATGCAGATAAGGAATTTCTGGCCCAAAAAAGTGCTCCACATTGTGACTTTTATAATGTTAGGAACGTCGATATCCATGTTCATAACTCGGCATGCATGAACCAGAAGCATCTTTTGAGGTTTATAAAGTCAAAGTTGAGGAAGGAGCCTGATGAGGTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

151

Amino Acids

17.2

Weight (kDa)

8.87

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSase_L_D2	PF02786	30 - 89	4.9e-09	Carbamoyl-phosphate synthase L chain, ATP binding domain
AMP_deaminase	PF19326	78 - 150	3.6e-29	AMP deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36160 AT1G36160 AT1G36180 AT1G36180 AT1G36180
fragaria_vesca	FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000
malus_domestica	MD08G1178000.v1.1 MD15G1363500.v1.1
prunus_persica	Prupe.1G512000_v2.0.a1 Prupe.1G512000_v2.0.a1 Prupe.1G512000_v2.0.a1
pyrus_communis	pycom08g15250 pycom15g32670
rosa_chinensis	RchiOBHm_Chr2g0140771 RchiOBHm_Chr2g0144971 RchiOBHm_Chr7g0239931
rosa_laevigata	RLG00000000716 RLG00000013564 RLG00000020589
rosa_multiflora	Rmu_co8457723.1_g000001 Rmu_sc0000540.1_g000024 Rmu_sc0001684.1_g000001 Rmu_sc0006326.1_g000027 Rmu_sc0041871.1_g000001 Rmu_sc0041872.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220610
rosa_rugosa	Rorug03G0235100 Rorug07G0331300 Rorug07G0331300
rosa_samantha	Rh1CG081500 Rh1DG087900 Rh4AG110300 Rh4DG033300 Rh5BG555900 Rh5CG578700 Rh5DG265800 Rh7AG485000 Rh7BG458000 Rh7DG470600
rosa_wichuraiana	Rw7G040680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	342, 413
AatII	GACGTC	2 cut(s)	12, 22
AciI	CCGC	2 cut(s)	27, 42
AcsI	RAATTY	1 cut(s)	302
AcyI	GRCGYC	2 cut(s)	9, 19
AdeI	CACNNNGTG	1 cut(s)	332
AfaI	GTAC	2 cut(s)	212, 233
AgsI	TTSAA	2 cut(s)	250, 271
AluBI	AGCT	5 cut(s)	69, 119, 155, 180, 194
AluI	AGCT	5 cut(s)	69, 119, 155, 180, 194
Alw21I	GWGCWC	2 cut(s)	71, 325
Alw26I	GTCTC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	2 cut(s)	152, 191
ApoI	RAATTY	1 cut(s)	302
AspS9I	GGNCC	2 cut(s)	104, 310
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	71
Bbv12I	GWGCWC	2 cut(s)	71, 325
BbvI	GCAGC	2 cut(s)	164, 203
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	2 cut(s)	57, 125
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	2 cut(s)	153, 192
BlsI	GCNGC	2 cut(s)	154, 193
BmcAI	AGTACT	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	104
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	104, 310
BmiI	GGNNCC	3 cut(s)	75, 105, 435
BmsI	GCATC	1 cut(s)	406
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
BsaHI	GRCGYC	2 cut(s)	9, 19
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bse1I	ACTGG	1 cut(s)	229
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	2 cut(s)	164, 203
BshFI	GGCC	1 cut(s)	311
BsiHKAI	GWGCWC	2 cut(s)	71, 325
BsiHKCI	CYCGRG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	71, 325
Bsp1407I	TGTACA	1 cut(s)	210
BspACI	CCGC	2 cut(s)	27, 42
BspANI	GGCC	1 cut(s)	311
BspLI	GGNNCC	3 cut(s)	75, 105, 435
BsrGI	TGTACA	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	229
BssNI	GRCGYC	2 cut(s)	9, 19
Bst4CI	ACNGT	3 cut(s)	115, 199, 215
BstACI	GRCGYC	2 cut(s)	9, 19
BstAUI	TGTACA	1 cut(s)	210
BstC8I	GCNNGC	2 cut(s)	165, 382
BstDEI	CTNAG	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstNSI	RCATGY	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	164, 203
BsuRI	GGCC	1 cut(s)	311
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	2 cut(s)	165, 382
CaiI	CAGNNNCTG	1 cut(s)	197
Cfr13I	GGNCC	2 cut(s)	104, 310
Csp6I	GTAC	2 cut(s)	211, 232
CviAII	CATG	4 cut(s)	85, 365, 381, 385
CviQI	GTAC	2 cut(s)	211, 232
DdeI	CTNAG	1 cut(s)	241
DraIII	CACNNNGTG	1 cut(s)	332
Ecl136II	GAGCTC	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	104
Eco53kI	GAGCTC	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	69
EcoRV	GATATC	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	386
EcoT38I	GRGCYC	1 cut(s)	71
FaeI	CATG	4 cut(s)	88, 368, 384, 388
FatI	CATG	4 cut(s)	84, 364, 380, 384
Fnu4HI	GCNGC	2 cut(s)	153, 192
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	153, 192
FspBI	CTAG	2 cut(s)	57, 125
GluI	GCNGC	2 cut(s)	153, 192
HaeIII	GGCC	1 cut(s)	311
Hin1I	GRCGYC	2 cut(s)	9, 19
Hin1II	CATG	4 cut(s)	88, 368, 384, 388
HinfI	GANTC	2 cut(s)	80, 250
Hpy188III	TCNNGA	1 cut(s)	77
Hpy99I	CGWCG	3 cut(s)	21, 24, 359
HpyAV	CCTTC	2 cut(s)	153, 424
HpyCH4III	ACNGT	3 cut(s)	115, 199, 215
HpyCH4IV	ACGT	3 cut(s)	9, 19, 354
HpyCH4V	TGCA	4 cut(s)	88, 262, 293, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpyF3I	CTNAG	1 cut(s)	241
HpySE526I	ACGT	3 cut(s)	9, 19, 354
Hsp92I	GRCGYC	2 cut(s)	9, 19
Hsp92II	CATG	4 cut(s)	88, 368, 384, 388
LmnI	GCTCC	6 cut(s)	66, 79, 124, 188, 328, 433
LpnPI	CCDG	5 cut(s)	134, 149, 210, 293, 404
Lsp1109I	GCAGC	2 cut(s)	164, 203
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	2 cut(s)	57, 125
MaeII	ACGT	3 cut(s)	9, 19, 354
MaeIII	GTNAC	2 cut(s)	50, 332
MboII	GAAGA	1 cut(s)	266
MfeI	CAATTG	1 cut(s)	257
MhlI	GDGCHC	2 cut(s)	71, 325
MluCI	AATT	3 cut(s)	132, 257, 302
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	2 cut(s)	123, 166
MnlI	CCTC	6 cut(s)	91, 94, 264, 399, 420, 436
Mph1103I	ATGCAT	1 cut(s)	386
MseI	TTAA	2 cut(s)	281, 288
MunI	CAATTG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	66
NlaIII	CATG	4 cut(s)	88, 368, 384, 388
NlaIV	GGNNCC	3 cut(s)	75, 105, 435
NmeAIII	GCCGAG	2 cut(s)	50, 356
NmuCI	GTSAC	1 cut(s)	332
NsiI	ATGCAT	1 cut(s)	386
NspI	RCATGY	1 cut(s)	384
PaeI	GCATGC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	154, 193
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PsiI	TTATAA	2 cut(s)	342, 413
Psp124BI	GAGCTC	1 cut(s)	71
PspN4I	GGNNCC	3 cut(s)	75, 105, 435
PspPI	GGNCC	2 cut(s)	104, 310
PstNI	CAGNNNCTG	1 cut(s)	197
RsaI	GTAC	2 cut(s)	212, 233
RsaNI	GTAC	2 cut(s)	211, 232
SacI	GAGCTC	1 cut(s)	71
SaqAI	TTAA	2 cut(s)	281, 288
SatI	GCNGC	2 cut(s)	153, 192
Sau96I	GGNCC	2 cut(s)	104, 310
ScaI	AGTACT	1 cut(s)	233
SchI	GAGTC	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	71, 325
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	1 cut(s)	114
SinI	GGWCC	1 cut(s)	104
SphI	GCATGC	1 cut(s)	384
Sse9I	AATT	3 cut(s)	132, 257, 302
SsiI	CCGC	2 cut(s)	27, 42
SspMI	CTAG	2 cut(s)	57, 125
SstI	GAGCTC	1 cut(s)	71
TaaI	ACNGT	3 cut(s)	115, 199, 215
TaiI	ACGT	3 cut(s)	12, 22, 357
TaqI	TCGA	2 cut(s)	157, 357
TasI	AATT	3 cut(s)	132, 257, 302
TatI	WGTACW	2 cut(s)	210, 231
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	281, 288
Tru9I	TTAA	2 cut(s)	281, 288
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	2 cut(s)	152, 191
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	2 cut(s)	359, 401
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	1 cut(s)	384
XspI	CTAG	2 cut(s)	57, 125
ZraI	GACGTC	2 cut(s)	10, 20
ZrmI	AGTACT	1 cut(s)	233
Zsp2I	ATGCAT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.