Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006326.1

Orthogroup ID

OG0001986

Physical Location & Seq

Genomic Coordinates Reverse (-)

74146 .. 77202

Gene Structure 3057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006326.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

atggttcacatcgtgtctcctaatcgtccgtggctcgcactcttgtcgacggtgacttcatgttctcagattcaatctattagtggcggttcttttcagttaggggaagaggttgcgctggttggttggattggtatggcaatgagagttagccaactccgtccaagctggtcacgactaaaattggtgaacagttctggtttggtattgtggctggggttgttgacacaaaccataacagaggaatattggaatctcatgccaaaccctaaagagataattaaattaagcgaaggctgtgtgtatggggaagagttgttggtgctcgggattttccagactggccagaatgggttctatacagggggatcattttcggtgagtgacagaagtgcggctgttagaagaccccagcaccacctcgatgaccttgaccgagagtctgaaatggaggacgtcatacaatgtcgcaccgccacaccacgtaccgcaagaggttactccagcacaaggagctcggctcccgagtccatgcagattattgaggagggtccaataattgtagctccaccagagacaattagaaagttggagctggcagctcgaaggctggataaaagtgttaactatgttggagtagctactgttgagtatctgtatagtatggacactggcgagtactatttcttagagttgaaccctcggttgcagcaaaaaaaagagctttctcctgttgctaatgcaagctcatttttcattgaccttcaccacattcttcgagttatagcagcagggaatatcagaactttatgccatcatcgcttgaatcttctggaacaaaagttcaatcttcacttaatgcttaatgcggataaggaatttctggcccagaaaagtgctccacattgtgacttttataatgttaggaacgtcgatatccatgttcatcactcggcatgcatgaaccagaagcaacttttaaggtttataaagtcaaagttgaggaaggagcctgatgaggtaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

342

Amino Acids

38.69

Weight (kDa)

7.2

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36160 AT1G36160 AT1G36180 AT1G36180 AT1G36180
fragaria_vesca	FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000
malus_domestica	MD08G1178000.v1.1 MD15G1363500.v1.1
prunus_persica	Prupe.1G512000_v2.0.a1 Prupe.1G512000_v2.0.a1 Prupe.1G512000_v2.0.a1
pyrus_communis	pycom08g15250 pycom15g32670
rosa_chinensis	RchiOBHm_Chr2g0140771 RchiOBHm_Chr2g0144971 RchiOBHm_Chr7g0239931
rosa_laevigata	RLG00000000716 RLG00000013564 RLG00000020589
rosa_multiflora	Rmu_co8457723.1_g000001 Rmu_sc0000540.1_g000024 Rmu_sc0001684.1_g000001 Rmu_sc0006326.1_g000027 Rmu_sc0041871.1_g000001 Rmu_sc0041872.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220610
rosa_rugosa	Rorug03G0235100 Rorug07G0331300 Rorug07G0331300
rosa_samantha	Rh1CG081500 Rh1DG087900 Rh4AG110300 Rh4DG033300 Rh5BG555900 Rh5CG578700 Rh5DG265800 Rh7AG485000 Rh7BG458000 Rh7DG470600
rosa_wichuraiana	Rw7G040680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	918, 989
AatII	GACGTC	1 cut(s)	459
AccI	GTMKAC	1 cut(s)	47
AciI	CCGC	5 cut(s)	87, 395, 474, 489, 869
AclWI	GGATC	1 cut(s)	376
AcoI	YGGCCR	1 cut(s)	343
AcsI	RAATTY	1 cut(s)	878
AcyI	GRCGYC	1 cut(s)	456
AdeI	CACNNNGTG	2 cut(s)	13, 908
AfaI	GTAC	2 cut(s)	487, 680
AfiI	CCNNNNNNNGG	1 cut(s)	510
AgsI	TTSAA	4 cut(s)	74, 697, 826, 847
AhdI	GACNNNNNGTC	1 cut(s)	439
AloI	GAACNNNNNNTCC	2 cut(s)	827, 859
AluBI	AGCT	8 cut(s)	168, 516, 566, 595, 602, 641, 724, 747
AluI	AGCT	8 cut(s)	168, 516, 566, 595, 602, 641, 724, 747
Alw21I	GWGCWC	3 cut(s)	327, 518, 901
Alw26I	GTCTC	2 cut(s)	21, 569
AlwI	GGATC	1 cut(s)	376
Ama87I	CYCGRG	2 cut(s)	326, 524
AoxI	GGCC	2 cut(s)	343, 885
ApeKI	GCWGC	3 cut(s)	599, 709, 788
ApoI	RAATTY	1 cut(s)	878
Asp700I	GAANNNNTTC	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	2 cut(s)	551, 886
AsuHPI	GGTGA	4 cut(s)	64, 199, 391, 758
AvaI	CYCGRG	2 cut(s)	326, 524
AvaII	GGWCC	1 cut(s)	551
BalI	TGGCCA	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	518
BbsI	GAAGAC	1 cut(s)	412
Bbv12I	GWGCWC	3 cut(s)	327, 518, 901
BbvI	GCAGC	3 cut(s)	611, 721, 800
BccI	CCATC	1 cut(s)	822
BcgI	CGANNNNNNTGC	2 cut(s)	27, 61
BcoDI	GTCTC	2 cut(s)	21, 569
BisI	GCNGC	4 cut(s)	396, 600, 710, 789
BlsI	GCNGC	4 cut(s)	397, 601, 711, 790
BmcAI	AGTACT	1 cut(s)	680
Bme18I	GGWCC	1 cut(s)	551
BmeRI	GACNNNNNGTC	1 cut(s)	439
BmeT110I	CYCGRG	2 cut(s)	326, 524
BmgT120I	GGNCC	2 cut(s)	551, 886
BmiI	GGNNCC	3 cut(s)	522, 552, 1011
BpiI	GAAGAC	1 cut(s)	412
BplI	GAGNNNNNCTC	2 cut(s)	505, 537
BpmI	CTGGAG	1 cut(s)	487
BsaAI	YACGTR	1 cut(s)	485
BsaHI	GRCGYC	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	29, 701
Bsc4I	CCNNNNNNNGG	1 cut(s)	510
Bse1I	ACTGG	2 cut(s)	346, 676
Bse3DI	GCAATG	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	29, 701
BseLI	CCNNNNNNNGG	1 cut(s)	510
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	2 cut(s)	346, 676
BseRI	GAGGAG	1 cut(s)	560
BseXI	GCAGC	3 cut(s)	611, 721, 800
BseYI	CCCAGC	2 cut(s)	214, 411
BshFI	GGCC	2 cut(s)	345, 887
BsiHKAI	GWGCWC	3 cut(s)	327, 518, 901
BsiHKCI	CYCGRG	2 cut(s)	326, 524
BslI	CCNNNNNNNGG	1 cut(s)	510
BsmAI	GTCTC	2 cut(s)	21, 569
BsnI	GGCC	2 cut(s)	345, 887
BsoBI	CYCGRG	2 cut(s)	326, 524
Bsp1286I	GDGCHC	3 cut(s)	327, 518, 901
Bsp143I	GATC	1 cut(s)	368
BspACI	CCGC	5 cut(s)	87, 395, 474, 489, 869
BspANI	GGCC	2 cut(s)	345, 887
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	3 cut(s)	522, 552, 1011
BspPI	GGATC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	147
BsrI	ACTGG	2 cut(s)	346, 676
BssECI	CCNNGG	2 cut(s)	29, 701
BssMI	GATC	1 cut(s)	368
BssNI	GRCGYC	1 cut(s)	456
Bst4CI	ACNGT	3 cut(s)	52, 194, 646
Bst6I	CTCTTC	2 cut(s)	102, 306
BstACI	GRCGYC	1 cut(s)	456
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	4 cut(s)	36, 597, 745, 958
BstDEI	CTNAG	2 cut(s)	66, 688
BstDSI	CCRYGG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	1 cut(s)	371
BstMAI	GTCTC	2 cut(s)	21, 569
BstMBI	GATC	1 cut(s)	368
BstMWI	GCNNNNNNNGC	2 cut(s)	513, 819
BstNSI	RCATGY	1 cut(s)	960
BstV1I	GCAGC	3 cut(s)	611, 721, 800
BstV2I	GAAGAC	1 cut(s)	412
BsuRI	GGCC	2 cut(s)	345, 887
BtgI	CCRYGG	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	803
BtsIMutI	CAGTG	1 cut(s)	669
Cac8I	GCNNGC	4 cut(s)	36, 597, 745, 958
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	2 cut(s)	551, 886
Csp6I	GTAC	2 cut(s)	486, 679
CviAII	CATG	6 cut(s)	60, 259, 532, 941, 957, 961
CviQI	GTAC	2 cut(s)	486, 679
DdeI	CTNAG	2 cut(s)	66, 688
DpnI	GATC	1 cut(s)	370
DpnII	GATC	1 cut(s)	368
DraIII	CACNNNGTG	2 cut(s)	13, 908
DriI	GACNNNNNGTC	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	343
Eam1104I	CTCTTC	2 cut(s)	102, 306
Eam1105I	GACNNNNNGTC	1 cut(s)	439
EarI	CTCTTC	2 cut(s)	102, 306
Ecl136II	GAGCTC	1 cut(s)	516
Eco24I	GRGCYC	1 cut(s)	518
Eco32I	GATATC	1 cut(s)	937
Eco47I	GGWCC	1 cut(s)	551
Eco53kI	GAGCTC	1 cut(s)	516
Eco88I	CYCGRG	2 cut(s)	326, 524
EcoICRI	GAGCTC	1 cut(s)	516
EcoRV	GATATC	1 cut(s)	937
EcoT22I	ATGCAT	1 cut(s)	962
EcoT38I	GRGCYC	1 cut(s)	518
FaeI	CATG	6 cut(s)	63, 262, 535, 944, 960, 964
FatI	CATG	6 cut(s)	59, 258, 531, 940, 956, 960
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	4 cut(s)	396, 600, 710, 789
FriOI	GRGCYC	1 cut(s)	518
Fsp4HI	GCNGC	4 cut(s)	396, 600, 710, 789
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	4 cut(s)	396, 600, 710, 789
GsaI	CCCAGC	2 cut(s)	218, 415
GsuI	CTGGAG	1 cut(s)	487
HaeIII	GGCC	2 cut(s)	345, 887
HhaI	GCGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	456
Hin1II	CATG	6 cut(s)	63, 262, 535, 944, 960, 964
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HincII	GTYRAC	3 cut(s)	48, 225, 625
HindII	GTYRAC	3 cut(s)	48, 225, 625
HinfI	GANTC	5 cut(s)	70, 253, 440, 527, 826
HpaI	GTTAAC	1 cut(s)	625
HphI	GGTGA	4 cut(s)	64, 199, 391, 758
Hpy166II	GTNNAC	5 cut(s)	7, 48, 190, 225, 625
Hpy188I	TCNGA	3 cut(s)	69, 445, 803
Hpy188III	TCNNGA	5 cut(s)	174, 328, 337, 524, 833
Hpy8I	GTNNAC	5 cut(s)	7, 48, 190, 225, 625
Hpy99I	CGWCG	2 cut(s)	52, 935
HpyAV	CCTTC	4 cut(s)	287, 600, 773, 1000
HpyCH4III	ACNGT	3 cut(s)	52, 194, 646
HpyCH4IV	ACGT	3 cut(s)	456, 484, 930
HpyCH4V	TGCA	4 cut(s)	535, 709, 743, 960
HpyF10VI	GCNNNNNNNGC	2 cut(s)	513, 819
HpyF3I	CTNAG	2 cut(s)	66, 688
HpySE526I	ACGT	3 cut(s)	456, 484, 930
Hsp92I	GRCGYC	1 cut(s)	456
Hsp92II	CATG	6 cut(s)	63, 262, 535, 944, 960, 964
HspAI	GCGC	1 cut(s)	116
KspAI	GTTAAC	1 cut(s)	625
Kzo9I	GATC	1 cut(s)	368
LmnI	GCTCC	6 cut(s)	513, 526, 571, 592, 904, 1009
Lsp1109I	GCAGC	3 cut(s)	611, 721, 800
MaeII	ACGT	3 cut(s)	456, 484, 930
MaeIII	GTNAC	5 cut(s)	52, 171, 383, 497, 908
MalI	GATC	1 cut(s)	370
MboI	GATC	1 cut(s)	368
MboII	GAAGA	6 cut(s)	119, 323, 417, 767, 821, 842
MhlI	GDGCHC	3 cut(s)	327, 518, 901
MlsI	TGGCCA	1 cut(s)	345
MluCI	AATT	7 cut(s)	182, 279, 284, 558, 579, 878, 1023
MluNI	TGGCCA	1 cut(s)	345
MlyI	GAGTC	2 cut(s)	449, 536
MmeI	TCCRAC	3 cut(s)	107, 570, 613
Mox20I	TGGCCA	1 cut(s)	345
Mph1103I	ATGCAT	1 cut(s)	962
MroXI	GAANNNNTTC	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	345
MseI	TTAA	6 cut(s)	282, 287, 624, 857, 864, 980
MslI	CAYNNNNRTG	1 cut(s)	423
Msp20I	TGGCCA	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	513, 819
NdeII	GATC	1 cut(s)	368
NlaIII	CATG	6 cut(s)	63, 262, 535, 944, 960, 964
NlaIV	GGNNCC	3 cut(s)	522, 552, 1011
NmeAIII	GCCGAG	2 cut(s)	497, 932
NmuCI	GTSAC	4 cut(s)	52, 171, 383, 908
NsiI	ATGCAT	1 cut(s)	962
NspI	RCATGY	1 cut(s)	960
PaeI	GCATGC	1 cut(s)	960
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	3 cut(s)	70, 253, 826
PkrI	GCNGC	4 cut(s)	397, 601, 711, 790
PleI	GAGTC	2 cut(s)	448, 535
PpsI	GAGTC	2 cut(s)	448, 535
Ppu21I	YACGTR	1 cut(s)	485
PsiI	TTATAA	2 cut(s)	918, 989
Psp124BI	GAGCTC	1 cut(s)	518
PspFI	CCCAGC	2 cut(s)	214, 411
PspN4I	GGNNCC	3 cut(s)	522, 552, 1011
PspPI	GGNCC	2 cut(s)	551, 886
RsaI	GTAC	2 cut(s)	487, 680
RsaNI	GTAC	2 cut(s)	486, 679
RseI	CAYNNNNRTG	1 cut(s)	423
SacI	GAGCTC	1 cut(s)	518
SalI	GTCGAC	1 cut(s)	46
SaqAI	TTAA	6 cut(s)	282, 287, 624, 857, 864, 980
SatI	GCNGC	4 cut(s)	396, 600, 710, 789
Sau3AI	GATC	1 cut(s)	368
Sau96I	GGNCC	2 cut(s)	551, 886
ScaI	AGTACT	1 cut(s)	680
SchI	GAGTC	2 cut(s)	449, 536
SduI	GDGCHC	3 cut(s)	327, 518, 901
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	423
SphI	GCATGC	1 cut(s)	960
Sse9I	AATT	7 cut(s)	182, 279, 284, 558, 579, 878, 1023
SsiI	CCGC	5 cut(s)	87, 395, 474, 489, 869
SspI	AATATT	1 cut(s)	248
SstI	GAGCTC	1 cut(s)	518
TaaI	ACNGT	3 cut(s)	52, 194, 646
TaiI	ACGT	3 cut(s)	459, 487, 933
TaqI	TCGA	5 cut(s)	47, 423, 604, 778, 933
TaqII	GACCGA	1 cut(s)	450
TasI	AATT	7 cut(s)	182, 279, 284, 558, 579, 878, 1023
TatI	WGTACW	1 cut(s)	678
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	3 cut(s)	70, 253, 826
Tru1I	TTAA	6 cut(s)	282, 287, 624, 857, 864, 980
Tru9I	TTAA	6 cut(s)	282, 287, 624, 857, 864, 980
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	4 cut(s)	52, 171, 383, 908
TseI	GCWGC	3 cut(s)	599, 709, 788
Tsp45I	GTSAC	4 cut(s)	52, 171, 383, 908
TspDTI	ATGAA	4 cut(s)	48, 745, 935, 977
TspGWI	ACGGA	2 cut(s)	18, 149
TspRI	CASTG	1 cut(s)	676
VpaK11BI	GGWCC	1 cut(s)	551
XapI	RAATTY	1 cut(s)	878
XceI	RCATGY	1 cut(s)	960
XmiI	GTMKAC	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	353
ZraI	GACGTC	1 cut(s)	457
ZrmI	AGTACT	1 cut(s)	680
Zsp2I	ATGCAT	1 cut(s)	962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.