Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001986

Physical Location & Seq

Genomic Coordinates Reverse (-)

32108072 .. 32120537

Gene Structure 12466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG265800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTTTGGGAAAGGAAAGCCGCAAGGGAAAAGCAGCGTCGTTGGAGTCACTCAGCCTCACCGAGACCAAGTGAAGCCAGTACTTGACCTGGTTATTGAGGAGGGTCCAATAACTGTAGCTCCACCAGAGACAATTAGAAAGTTGGAGCAGGCAGCTCGAAGGCTGGCTAAAAGTGTCAACTATGTGGAGCACCCGGTCATTGAGTGGATAGCAGAAATAAATCTGCCAGCAGCCCAAGTTGCAGTAGTGCATATTGAACGGGGAGAGGTCTACTATGCTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003989 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0016020 GO:0016053 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022414 GO:0022622 GO:0030497 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944 GO:0072330 GO:0090421 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00254 ko00620 ko00640 ko01100 ko01110 ko01212 ko04152 ko04910 ko04922 map00061 map00254 map00620 map00640 map01100 map01110 map01212 map04152 map04910 map04922

Pfam Domains

Protein Families

ACC_central Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2 Carboxyl_trans

Protein Analysis

94

Amino Acids

10.38

Weight (kDa)

6.83

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36160 AT1G36160 AT1G36180 AT1G36180 AT1G36180
fragaria_vesca	FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000
malus_domestica	MD08G1178000.v1.1 MD15G1363500.v1.1
prunus_persica	Prupe.1G512000_v2.0.a1 Prupe.1G512000_v2.0.a1 Prupe.1G512000_v2.0.a1
pyrus_communis	pycom08g15250 pycom15g32670
rosa_chinensis	RchiOBHm_Chr2g0140771 RchiOBHm_Chr2g0144971 RchiOBHm_Chr7g0239931
rosa_laevigata	RLG00000000716 RLG00000013564 RLG00000020589
rosa_multiflora	Rmu_co8457723.1_g000001 Rmu_sc0000540.1_g000024 Rmu_sc0001684.1_g000001 Rmu_sc0006326.1_g000027 Rmu_sc0041871.1_g000001 Rmu_sc0041872.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220610
rosa_rugosa	Rorug03G0235100 Rorug07G0331300 Rorug07G0331300
rosa_samantha	Rh1CG081500 Rh1DG087900 Rh4AG110300 Rh4DG033300 Rh5BG555900 Rh5CG578700 Rh5DG265800 Rh7AG485000 Rh7BG458000 Rh7DG470600
rosa_wichuraiana	Rw7G040680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	270
AciI	CCGC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	2 cut(s)	119, 155
AluI	AGCT	2 cut(s)	119, 155
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	2 cut(s)	57, 122
ApeKI	GCWGC	3 cut(s)	33, 152, 230
AspS9I	GGNCC	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	3 cut(s)	45, 164, 242
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	1 cut(s)	89
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	2 cut(s)	57, 122
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	4 cut(s)	20, 34, 153, 231
BlsI	GCNGC	4 cut(s)	21, 35, 154, 232
BmcAI	AGTACT	1 cut(s)	81
Bme1390I	CCNGG	2 cut(s)	89, 194
Bme18I	GGWCC	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	2 cut(s)	89, 194
BpuMI	CCSGG	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	57
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bse1I	ACTGG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	3 cut(s)	45, 164, 242
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	194
BsmAI	GTCTC	2 cut(s)	57, 122
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	192
BspACI	CCGC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	105
BspTNI	GGTCTC	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	115
BstC8I	GCNNGC	3 cut(s)	150, 165, 228
BstDEI	CTNAG	1 cut(s)	51
BstMAI	GTCTC	2 cut(s)	57, 122
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	2 cut(s)	87, 192
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	3 cut(s)	45, 164, 242
Cac8I	GCNNGC	3 cut(s)	150, 165, 228
Cfr13I	GGNCC	1 cut(s)	104
CseI	GACGC	1 cut(s)	25
CsiI	ACCWGGT	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	80
CviJI	RGCY	8 cut(s)	19, 55, 76, 119, 155, 163, 167, 233
CviKI_1	RGCY	8 cut(s)	19, 55, 76, 119, 155, 163, 167, 233
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	87
FaiI	YATR	4 cut(s)	183, 252, 276, 283
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	4 cut(s)	20, 34, 153, 231
Fsp4HI	GCNGC	4 cut(s)	20, 34, 153, 231
GluI	GCNGC	4 cut(s)	20, 34, 153, 231
HapII	CCGG	1 cut(s)	194
HgaI	GACGC	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	1 cut(s)	45
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	2 cut(s)	178, 271
Hpy8I	GTNNAC	2 cut(s)	178, 271
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	242, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	51
LmnI	GCTCC	3 cut(s)	124, 145, 187
LpnPI	CCDG	8 cut(s)	74, 90, 101, 134, 138, 149, 207, 240
Lsp1109I	GCAGC	3 cut(s)	45, 164, 242
MabI	ACCWGGT	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	2 cut(s)	22, 123
MnlI	CCTC	4 cut(s)	66, 91, 94, 259
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	2 cut(s)	89, 194
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	239
NciI	CCSGG	1 cut(s)	194
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	46
PkrI	GCNGC	4 cut(s)	21, 35, 154, 232
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	104
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SatI	GCNGC	4 cut(s)	20, 34, 153, 231
Sau96I	GGNCC	1 cut(s)	104
ScaI	AGTACT	1 cut(s)	81
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	2 cut(s)	89, 194
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	4 cut(s)	90, 121, 157, 270
SexAI	ACCWGGT	1 cut(s)	87
SfcI	CTRYAG	1 cut(s)	114
SinI	GGWCC	1 cut(s)	104
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	87, 192
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	157
TasI	AATT	1 cut(s)	132
TatI	WGTACW	1 cut(s)	79
TauI	GCSGC	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	3 cut(s)	33, 152, 230
Tsp45I	GTSAC	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	270
ZrmI	AGTACT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.