Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001986

Physical Location & Seq

Genomic Coordinates Reverse (-)

2931566 .. 2945035

Gene Structure 13470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00220610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGATGGGTGAGCTCCGCGGTGGAGCATGGGTGGTCGTTGATAGCCGGATAAATCCGGACCATATTGAAATGTATGCTGATCGAACGGCTAGAGGAAATGTGCTTGAGCCAGAGGGGATGATCGAGATCAAGTTTAGGAACAAGGAATTGCTGGAGTGCATGGGCAGGCTTGACCAACAGCTGATCCAACTAAAGACTAAGCTTCAGGAAGCCAGGAGCTGTGGGGCGAATGAGAAGGTTGAATCCCTACAGTTTCAGATACGATCCCGAGAAAAACAGCTTTTGCCCGTCTACACTCAGATAGCTACCAAATTTGCAGAACTTCATGATACGTCTCTGAGGATGGCTGCAAAAGGGGTAATCAGAGGAGTTTTGGAGTGGGCCAGCTCTCGATCTTTCTTGTACAAGAGATTGCGTCGGAGAATTGCCGATGACTCACTCATCAAGACAGTGATAGATGCTGCTGGTGAGCAGCTGTCACACAGATCTGCAATGGATTTGATCAAGAGCTGGTTTTTGAGTTCTGATATTTCAAGAGGCAGGGAAGATGCTTGGGAGGATGATGAAACTTTCTTTAGATGGAAGGATGATCAAACTAATTATGAGGGTAAGCTAAAAGAATTGCGGGTCCAGAAGGTATTGCTTCAATTGGCAACCATTGGCAACTCAGCTTCTGATTTGCAAGCCCTACCTCAAGGTCTTGCTGCTCTTCTAAGCAAGGTTGAGCCATCAAGCAGATCATTTTTGGTTGAGGAACTCCGGAAGGTGCTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003989 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0016020 GO:0016053 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022414 GO:0022622 GO:0030497 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944 GO:0072330 GO:0090421 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00254 ko00620 ko00640 ko01100 ko01110 ko01212 ko04152 ko04910 ko04922 map00061 map00254 map00620 map00640 map01100 map01110 map01212 map04152 map04910 map04922

Pfam Domains

Protein Families

ACC_central Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2 Carboxyl_trans

Protein Analysis

258

Amino Acids

29.45

Weight (kDa)

8.46

Isoelectric Point (pI)

56.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carboxyl_trans	PF01039	2 - 142	1.3e-26	Carboxyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36160 AT1G36160 AT1G36180 AT1G36180 AT1G36180
fragaria_vesca	FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000
malus_domestica	MD08G1178000.v1.1 MD15G1363500.v1.1
prunus_persica	Prupe.1G512000_v2.0.a1 Prupe.1G512000_v2.0.a1 Prupe.1G512000_v2.0.a1
pyrus_communis	pycom08g15250 pycom15g32670
rosa_chinensis	RchiOBHm_Chr2g0140771 RchiOBHm_Chr2g0144971 RchiOBHm_Chr7g0239931
rosa_laevigata	RLG00000000716 RLG00000013564 RLG00000020589
rosa_multiflora	Rmu_co8457723.1_g000001 Rmu_sc0000540.1_g000024 Rmu_sc0001684.1_g000001 Rmu_sc0006326.1_g000027 Rmu_sc0041871.1_g000001 Rmu_sc0041872.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220610
rosa_rugosa	Rorug03G0235100 Rorug07G0331300 Rorug07G0331300
rosa_samantha	Rh1CG081500 Rh1DG087900 Rh4AG110300 Rh4DG033300 Rh5BG555900 Rh5CG578700 Rh5DG265800 Rh7AG485000 Rh7BG458000 Rh7DG470600
rosa_wichuraiana	Rw7G040680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	1 cut(s)	18
AccIII	TCCGGA	2 cut(s)	55, 759
AciI	CCGC	3 cut(s)	16, 18, 625
AclWI	GGATC	2 cut(s)	178, 258
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	1 cut(s)	188
AfaI	GTAC	1 cut(s)	404
AgsI	TTSAA	4 cut(s)	68, 242, 534, 647
AjnI	CCWGG	1 cut(s)	212
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	2 cut(s)	178, 258
AlwNI	CAGNNNCTG	2 cut(s)	219, 674
Ama87I	CYCGRG	1 cut(s)	267
Aor13HI	TCCGGA	2 cut(s)	55, 759
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	4 cut(s)	347, 461, 472, 704
ApoI	RAATTY	1 cut(s)	311
AspS9I	GGNCC	3 cut(s)	58, 381, 628
AsuHPI	GGTGA	2 cut(s)	20, 479
AvaI	CYCGRG	1 cut(s)	267
AvaII	GGWCC	2 cut(s)	58, 628
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	4 cut(s)	334, 448, 484, 691
BccI	CCATC	3 cut(s)	337, 573, 736
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	214
BclI	TGATCA	2 cut(s)	501, 589
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	248
BglII	AGATCT	1 cut(s)	485
BisI	GCNGC	4 cut(s)	348, 462, 473, 705
BlsI	GCNGC	4 cut(s)	349, 463, 474, 706
Bme1390I	CCNGG	1 cut(s)	214
Bme18I	GGWCC	2 cut(s)	58, 628
BmeT110I	CYCGRG	1 cut(s)	267
BmgT120I	GGNCC	3 cut(s)	58, 381, 628
BmiI	GGNNCC	1 cut(s)	629
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	2 cut(s)	448, 538
BpmI	CTGGAG	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	125, 678
BsaBI	GATNNNNATC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	16
BsaWI	WCCGGW	2 cut(s)	55, 759
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse3DI	GCAATG	1 cut(s)	498
Bse8I	GATNNNNATC	1 cut(s)	125
BseAI	TCCGGA	2 cut(s)	55, 759
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	4 cut(s)	123, 348, 565, 592
BseJI	GATNNNNATC	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	3 cut(s)	311, 329, 681
BseRI	GAGGAG	1 cut(s)	381
BseXI	GCAGC	4 cut(s)	334, 448, 484, 691
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	267
BsiSI	CCGG	3 cut(s)	46, 56, 760
BsmAI	GTCTC	1 cut(s)	339
BsmBI	CGTCTC	1 cut(s)	339
BsnI	GGCC	1 cut(s)	383
BsoBI	CYCGRG	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	2 cut(s)	55, 759
Bsp1407I	TGTACA	1 cut(s)	402
BspACI	CCGC	3 cut(s)	16, 18, 625
BspANI	GGCC	1 cut(s)	383
BspCNI	CTCAG	3 cut(s)	310, 330, 680
BspEI	TCCGGA	2 cut(s)	55, 759
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	629
BspPI	GGATC	2 cut(s)	178, 258
BspQI	GCTCTTC	1 cut(s)	714
BsrDI	GCAATG	1 cut(s)	498
BsrGI	TGTACA	1 cut(s)	402
BssECI	CCNNGG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	2 cut(s)	252, 451
Bst6I	CTCTTC	1 cut(s)	714
BstAUI	TGTACA	1 cut(s)	402
BstC8I	GCNNGC	3 cut(s)	167, 385, 684
BstDEI	CTNAG	5 cut(s)	198, 297, 338, 667, 713
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	4 cut(s)	123, 348, 565, 592
BstFNI	CGCG	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	339
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	248
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	4 cut(s)	334, 448, 484, 691
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
BsuRI	GGCC	1 cut(s)	383
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	4 cut(s)	123, 348, 565, 592
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	3 cut(s)	167, 385, 684
CaiI	CAGNNNCTG	2 cut(s)	219, 674
CciI	TCATGA	1 cut(s)	325
Cfr13I	GGNCC	3 cut(s)	58, 381, 628
Cfr42I	CCGCGG	1 cut(s)	19
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	3 cut(s)	27, 160, 326
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	5 cut(s)	198, 297, 338, 667, 713
Eam1104I	CTCTTC	1 cut(s)	714
EarI	CTCTTC	1 cut(s)	714
Ecl136II	GAGCTC	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	2 cut(s)	58, 628
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	3 cut(s)	30, 163, 329
FaiI	YATR	6 cut(s)	28, 63, 75, 161, 327, 603
FatI	CATG	3 cut(s)	26, 159, 325
FauI	CCCGC	1 cut(s)	618
FbaI	TGATCA	2 cut(s)	501, 589
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	4 cut(s)	348, 462, 473, 705
FokI	GGATG	4 cut(s)	130, 355, 572, 599
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	4 cut(s)	348, 462, 473, 705
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	4 cut(s)	348, 462, 473, 705
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	3 cut(s)	46, 56, 760
HgaI	GACGC	1 cut(s)	404
Hin1II	CATG	3 cut(s)	30, 163, 329
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	2 cut(s)	242, 434
HpaII	CCGG	3 cut(s)	46, 56, 760
HphI	GGTGA	2 cut(s)	20, 479
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	7 cut(s)	258, 300, 339, 365, 420, 526, 676
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	1 cut(s)	420
HpyAV	CCTTC	4 cut(s)	229, 577, 628, 757
HpyCH4III	ACNGT	2 cut(s)	252, 451
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	5 cut(s)	159, 317, 350, 491, 682
HpyF3I	CTNAG	5 cut(s)	198, 297, 338, 667, 713
HpySE526I	ACGT	1 cut(s)	332
Hsp92II	CATG	3 cut(s)	30, 163, 329
Kpn2I	TCCGGA	2 cut(s)	55, 759
Ksp22I	TGATCA	2 cut(s)	501, 589
KspI	CCGCGG	1 cut(s)	19
LguI	GCTCTTC	1 cut(s)	714
LmnI	GCTCC	3 cut(s)	18, 23, 216
Lsp1109I	GCAGC	4 cut(s)	334, 448, 484, 691
LweI	GCATC	2 cut(s)	448, 538
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	477
MboII	GAAGA	2 cut(s)	557, 701
MfeI	CAATTG	1 cut(s)	647
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	6 cut(s)	146, 311, 423, 598, 620, 647
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	2 cut(s)	211, 398
MnlI	CCTC	9 cut(s)	86, 106, 333, 359, 530, 550, 598, 702, 745
MroI	TCCGGA	2 cut(s)	55, 759
MspA1I	CMGCKG	3 cut(s)	18, 181, 475
MspI	CCGG	3 cut(s)	46, 56, 760
MspR9I	CCNGG	1 cut(s)	214
MunI	CAATTG	1 cut(s)	647
MvaI	CCWGG	1 cut(s)	214
MvnI	CGCG	1 cut(s)	18
NlaIII	CATG	3 cut(s)	30, 163, 329
NlaIV	GGNNCC	1 cut(s)	629
NmuCI	GTSAC	1 cut(s)	477
PagI	TCATGA	1 cut(s)	325
PciSI	GCTCTTC	1 cut(s)	714
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	4 cut(s)	349, 463, 474, 706
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
Psp124BI	GAGCTC	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	629
PspPI	GGNCC	3 cut(s)	58, 381, 628
PstNI	CAGNNNCTG	2 cut(s)	219, 674
PsuI	RGATCY	1 cut(s)	485
PvuII	CAGCTG	2 cut(s)	181, 475
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SacI	GAGCTC	1 cut(s)	15
SacII	CCGCGG	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	714
SatI	GCNGC	4 cut(s)	348, 462, 473, 705
Sau96I	GGNCC	3 cut(s)	58, 381, 628
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	2 cut(s)	448, 538
SfcI	CTRYAG	1 cut(s)	248
Sfr303I	CCGCGG	1 cut(s)	19
SgrBI	CCGCGG	1 cut(s)	19
SinI	GGWCC	2 cut(s)	58, 628
SmlI	CTYRAG	2 cut(s)	104, 693
SmoI	CTYRAG	2 cut(s)	104, 693
Sse9I	AATT	6 cut(s)	146, 311, 423, 598, 620, 647
SsiI	CCGC	3 cut(s)	16, 18, 625
SspMI	CTAG	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	212
TaaI	ACNGT	2 cut(s)	252, 451
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	3 cut(s)	82, 123, 391
TasI	AATT	6 cut(s)	146, 311, 423, 598, 620, 647
TatI	WGTACW	1 cut(s)	402
TfiI	GAWTC	1 cut(s)	242
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	4 cut(s)	347, 461, 472, 704
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	2 cut(s)	314, 579
TspRI	CASTG	1 cut(s)	456
VpaK11BI	GGWCC	2 cut(s)	58, 628
XapI	RAATTY	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.