Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001986

Physical Location & Seq

Genomic Coordinates Forward (+)

88431546 .. 88437478

Gene Structure 5933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG555900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCTTGCAGTTGAAATGGGATTGAAGGAGCTTGATTTCCTGAAGCACTTATCAGGTGGTGGAAATTGCCTTTGTATTATGTTCTTGATTGCAGTTCTTGTAACTCTACTTGGTGCATTGAGTATAATAGTCAGGGATGACTATTCTTGTTATGGACCATCCTCTGGAAAGGTTATTGAGGAGGGTCCAATAACTGTAGCTCCACCAGAGACAATTAGAAAGTTGGAGCAGGCAGCTGAAAGGCTGGCTAAAAGTGTTAACTATGTTGGAGCAGGTAGTGTTGAGTATCTATACAGTATGGACACTGGCGAGTACTATTTCTTAGAGTTGAACCCTCGGTTGCAGGTGCAGGCAAATGTTATGGCAGCATACTTTGTGACATTGGCTATGTGTCTTGGCCCTTGGTGTGGCAGAATATACTTTCTTGACATACTTTCTCCATCAAATGGTATGGCAGAATATTACTTGTCCGACAGTTTCTTTTGGAGATCAGACATATATAAGTCATCCATGGAGGAGAGGAGGAAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003989 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0016020 GO:0016053 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022414 GO:0022622 GO:0030497 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944 GO:0072330 GO:0090421 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00254 ko00620 ko00640 ko01100 ko01110 ko01212 ko04152 ko04910 ko04922 map00061 map00254 map00620 map00640 map01100 map01110 map01212 map04152 map04910 map04922

Pfam Domains

Protein Families

ACC_central Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2 Carboxyl_trans

Protein Analysis

177

Amino Acids

19.8

Weight (kDa)

4.93

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSase_L_D2	PF02786	55 - 120	3e-13	Carbamoyl-phosphate synthase L chain, ATP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36160 AT1G36160 AT1G36180 AT1G36180 AT1G36180
fragaria_vesca	FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000
malus_domestica	MD08G1178000.v1.1 MD15G1363500.v1.1
prunus_persica	Prupe.1G512000_v2.0.a1 Prupe.1G512000_v2.0.a1 Prupe.1G512000_v2.0.a1
pyrus_communis	pycom08g15250 pycom15g32670
rosa_chinensis	RchiOBHm_Chr2g0140771 RchiOBHm_Chr2g0144971 RchiOBHm_Chr7g0239931
rosa_laevigata	RLG00000000716 RLG00000013564 RLG00000020589
rosa_multiflora	Rmu_co8457723.1_g000001 Rmu_sc0000540.1_g000024 Rmu_sc0001684.1_g000001 Rmu_sc0006326.1_g000027 Rmu_sc0041871.1_g000001 Rmu_sc0041872.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220610
rosa_rugosa	Rorug03G0235100 Rorug07G0331300 Rorug07G0331300
rosa_samantha	Rh1CG081500 Rh1DG087900 Rh4AG110300 Rh4DG033300 Rh5BG555900 Rh5CG578700 Rh5DG265800 Rh7AG485000 Rh7BG458000 Rh7DG470600
rosa_wichuraiana	Rw7G040680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
Acc36I	ACCTGC	2 cut(s)	263, 334
AccB7I	CCANNNNNTGG	2 cut(s)	164, 446
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	3 cut(s)	164, 407, 446
AgsI	TTSAA	3 cut(s)	14, 25, 331
AluBI	AGCT	3 cut(s)	31, 200, 236
AluI	AGCT	3 cut(s)	31, 200, 236
Alw26I	GTCTC	1 cut(s)	203
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	2 cut(s)	233, 365
AspS9I	GGNCC	3 cut(s)	155, 185, 398
AvaII	GGWCC	2 cut(s)	155, 185
BbvI	GCAGC	2 cut(s)	245, 377
BccI	CCATC	2 cut(s)	166, 448
BcoDI	GTCTC	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	195
BfuAI	ACCTGC	2 cut(s)	263, 334
BisI	GCNGC	2 cut(s)	234, 366
BlsI	GCNGC	2 cut(s)	235, 367
BmcAI	AGTACT	1 cut(s)	314
Bme18I	GGWCC	2 cut(s)	155, 185
BmgT120I	GGNCC	3 cut(s)	155, 185, 398
BmiI	GGNNCC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	335, 401, 510
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 407, 446
Bse1I	ACTGG	1 cut(s)	310
BseDI	CCNNGG	3 cut(s)	335, 401, 510
BseGI	GGATG	3 cut(s)	142, 158, 506
BseLI	CCNNNNNNNGG	3 cut(s)	164, 407, 446
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	2 cut(s)	194, 530
BseXI	GCAGC	2 cut(s)	245, 377
BsgI	GTGCAG	1 cut(s)	368
BshFI	GGCC	1 cut(s)	399
BslI	CCNNNNNNNGG	3 cut(s)	164, 407, 446
BsmAI	GTCTC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	399
Bsp143I	GATC	1 cut(s)	488
Bsp19I	CCATGG	1 cut(s)	510
BspANI	GGCC	1 cut(s)	399
BspLI	GGNNCC	1 cut(s)	186
BspMI	ACCTGC	2 cut(s)	263, 334
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	3 cut(s)	335, 401, 510
BssMI	GATC	1 cut(s)	488
BssT1I	CCWWGG	2 cut(s)	401, 510
Bst4CI	ACNGT	3 cut(s)	196, 296, 476
BstC8I	GCNNGC	4 cut(s)	6, 231, 246, 351
BstDEI	CTNAG	1 cut(s)	322
BstDSI	CCRYGG	1 cut(s)	510
BstF5I	GGATG	3 cut(s)	142, 158, 506
BstKTI	GATC	1 cut(s)	491
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	1 cut(s)	488
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	245, 377
BsuRI	GGCC	1 cut(s)	399
BtgI	CCRYGG	1 cut(s)	510
BtsCI	GGATG	3 cut(s)	142, 158, 506
BtsIMutI	CAGTG	1 cut(s)	303
BveI	ACCTGC	2 cut(s)	263, 334
Cac8I	GCNNGC	4 cut(s)	6, 231, 246, 351
Cfr13I	GGNCC	3 cut(s)	155, 185, 398
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	1 cut(s)	511
CviJI	RGCY	7 cut(s)	31, 200, 236, 244, 248, 386, 399
CviKI_1	RGCY	7 cut(s)	31, 200, 236, 244, 248, 386, 399
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	322
DpnI	GATC	1 cut(s)	490
DpnII	GATC	1 cut(s)	488
Eco130I	CCWWGG	2 cut(s)	401, 510
Eco47I	GGWCC	2 cut(s)	155, 185
Eco57I	CTGAAG	1 cut(s)	62
EcoT14I	CCWWGG	2 cut(s)	401, 510
ErhI	CCWWGG	2 cut(s)	401, 510
FaeI	CATG	1 cut(s)	514
FatI	CATG	1 cut(s)	510
Fnu4HI	GCNGC	2 cut(s)	234, 366
FokI	GGATG	3 cut(s)	145, 149, 493
Fsp4HI	GCNGC	2 cut(s)	234, 366
GluI	GCNGC	2 cut(s)	234, 366
HaeIII	GGCC	1 cut(s)	399
Hin1II	CATG	1 cut(s)	514
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HpaI	GTTAAC	1 cut(s)	259
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	472, 493
Hpy188III	TCNNGA	4 cut(s)	40, 85, 165, 425
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	3 cut(s)	196, 296, 476
HpyCH4V	TGCA	5 cut(s)	8, 92, 116, 343, 349
HpyF3I	CTNAG	1 cut(s)	322
Hsp92II	CATG	1 cut(s)	514
KspAI	GTTAAC	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	488
LmnI	GCTCC	4 cut(s)	28, 205, 226, 269
Lsp1109I	GCAGC	2 cut(s)	245, 377
MaeIII	GTNAC	2 cut(s)	100, 376
MalI	GATC	1 cut(s)	490
MboI	GATC	1 cut(s)	488
MluCI	AATT	3 cut(s)	64, 213, 527
MmeI	TCCRAC	3 cut(s)	204, 247, 495
MnlI	CCTC	7 cut(s)	172, 172, 175, 345, 508, 513, 516
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	510
NdeII	GATC	1 cut(s)	488
NlaIII	CATG	1 cut(s)	514
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	376
PaqCI	CACCTGC	1 cut(s)	334
PflMI	CCANNNNNTGG	2 cut(s)	164, 446
PkrI	GCNGC	2 cut(s)	235, 367
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	3 cut(s)	155, 185, 398
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	2 cut(s)	234, 366
Sau3AI	GATC	1 cut(s)	488
Sau96I	GGNCC	3 cut(s)	155, 185, 398
ScaI	AGTACT	1 cut(s)	314
SetI	ASST	7 cut(s)	33, 58, 174, 202, 238, 277, 348
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	2 cut(s)	155, 185
Sse9I	AATT	3 cut(s)	64, 213, 527
SspI	AATATT	1 cut(s)	461
StyI	CCWWGG	2 cut(s)	401, 510
TaaI	ACNGT	3 cut(s)	196, 296, 476
TasI	AATT	3 cut(s)	64, 213, 527
TatI	WGTACW	1 cut(s)	312
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	233, 365
Tsp45I	GTSAC	1 cut(s)	376
TspRI	CASTG	1 cut(s)	310
Van91I	CCANNNNNTGG	2 cut(s)	164, 446
VpaK11BI	GGWCC	2 cut(s)	155, 185
ZrmI	AGTACT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.