Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001986

Physical Location & Seq

Genomic Coordinates Forward (+)

66498746 .. 66501593

Gene Structure 2848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020589

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGACCTCGACTGAGAGTCCGAGATGGAGTACATCGTACGACGTCGCACCGCCACACCGCGTACTACAAGAGGTTACTCCAACACAAGGAGCTTGGCTCCCAAGTTCACGCAGTTTTTGGGCAGTGGGTTTCTGTGTGAATTGGGAAATTTTAGATGCTCCACCAGAGACAATTAGAAAGTTGGAGCAGGCAGCTCGAAGGCTGGCTAAAAGTGTTAACTATGTTGGAGCAGCTACTGTTGAGTATCTGTACACAAAAGAAGAGCTTTATCCTGTTGCTGATGCAACTACATTTTTCATTGACCTTCACCACATACTTCAAGTTATAGCAGCAGGGAATATCAGAACTTTATGCCATCATTACTTGAATCTTCTAGAACAAAAGTTCAATCTTCACTTAATGCTTAATGCGGATAAGGAATTTCTGGCCCAGAAAAGTGCTCCACATCGTGACTTTTATAATGTCTGGAACGTCGATATCCATGTTCATCACTCGGCATGCATGAACCAAAAGCATCTTTTGAGGTTTATAAAGTCAAAGTTGAGGAAGGAGCCTGATGAGAGTCTGGATTTGACTGGGTACGACCTGAATGTGGACCTTTTGGATGTTCATGCAGACAAAAGCACATTTCATCGTTTTGATAAGTTCAATTTGAAGTACAACCCCTATGGTCAAAGTAGGCTCATGGAGATTTTCCTTAACCAGGATAATCTTATCCAAGGCTGTTTCCTTGCTGAGCTGACAAAGCAAGTGTTTTCTGATCTTTCTGCCAGTAAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

261

Amino Acids

30.07

Weight (kDa)

6.53

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP_deaminase	PF19326	69 - 259	8.5e-75	AMP deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36160 AT1G36160 AT1G36180 AT1G36180 AT1G36180
fragaria_vesca	FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000
malus_domestica	MD08G1178000.v1.1 MD15G1363500.v1.1
prunus_persica	Prupe.1G512000_v2.0.a1 Prupe.1G512000_v2.0.a1 Prupe.1G512000_v2.0.a1
pyrus_communis	pycom08g15250 pycom15g32670
rosa_chinensis	RchiOBHm_Chr2g0140771 RchiOBHm_Chr2g0144971 RchiOBHm_Chr7g0239931
rosa_laevigata	RLG00000000716 RLG00000013564 RLG00000020589
rosa_multiflora	Rmu_co8457723.1_g000001 Rmu_sc0000540.1_g000024 Rmu_sc0001684.1_g000001 Rmu_sc0006326.1_g000027 Rmu_sc0041871.1_g000001 Rmu_sc0041872.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220610
rosa_rugosa	Rorug03G0235100 Rorug07G0331300 Rorug07G0331300
rosa_samantha	Rh1CG081500 Rh1DG087900 Rh4AG110300 Rh4DG033300 Rh5BG555900 Rh5CG578700 Rh5DG265800 Rh7AG485000 Rh7BG458000 Rh7DG470600
rosa_wichuraiana	Rw7G040680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	459, 530
AatII	GACGTC	1 cut(s)	45
AccII	CGCG	1 cut(s)	60
AciI	CCGC	3 cut(s)	50, 58, 410
AcsI	RAATTY	2 cut(s)	147, 419
AcyI	GRCGYC	1 cut(s)	42
AdeI	CACNNNGTG	1 cut(s)	449
AfaI	GTAC	6 cut(s)	31, 38, 63, 251, 581, 659
AfiI	CCNNNNNNNGG	3 cut(s)	86, 592, 703
AgsI	TTSAA	5 cut(s)	320, 367, 388, 649, 655
AhdI	GACNNNNNGTC	1 cut(s)	15
AjnI	CCWGG	1 cut(s)	702
AluBI	AGCT	5 cut(s)	92, 194, 233, 265, 739
AluI	AGCT	5 cut(s)	92, 194, 233, 265, 739
Alw21I	GWGCWC	1 cut(s)	442
Alw26I	GTCTC	1 cut(s)	161
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	3 cut(s)	191, 230, 329
ApoI	RAATTY	2 cut(s)	147, 419
AspS9I	GGNCC	2 cut(s)	427, 595
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	595
Bbv12I	GWGCWC	1 cut(s)	442
BbvI	GCAGC	3 cut(s)	203, 242, 341
BccI	CCATC	2 cut(s)	18, 363
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	1 cut(s)	704
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	374
BisI	GCNGC	3 cut(s)	192, 231, 330
BlpI	GCTNAGC	1 cut(s)	735
BlsI	GCNGC	3 cut(s)	193, 232, 331
Bme1390I	CCNGG	1 cut(s)	704
Bme18I	GGWCC	1 cut(s)	595
BmeRI	GACNNNNNGTC	1 cut(s)	15
BmgT120I	GGNCC	2 cut(s)	427, 595
BmiI	GGNNCC	2 cut(s)	98, 552
BmrFI	CCNGG	1 cut(s)	704
BmrI	ACTGGG	1 cut(s)	585
BmsI	GCATC	3 cut(s)	145, 271, 523
BmuI	ACTGGG	1 cut(s)	585
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
Bpu1102I	GCTNAGC	1 cut(s)	735
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	718
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 592, 703
Bse1I	ACTGG	2 cut(s)	580, 771
BseBI	CCWGG	1 cut(s)	704
BseDI	CCNNGG	1 cut(s)	718
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	3 cut(s)	86, 592, 703
BseMII	CTCAG	1 cut(s)	726
BseNI	ACTGG	2 cut(s)	580, 771
BseXI	GCAGC	3 cut(s)	203, 242, 341
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	428
BsiHKAI	GWGCWC	1 cut(s)	442
BsiWI	CGTACG	1 cut(s)	36
BslI	CCNNNNNNNGG	3 cut(s)	86, 592, 703
BsmAI	GTCTC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	760
Bsp1720I	GCTNAGC	1 cut(s)	735
BspACI	CCGC	3 cut(s)	50, 58, 410
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	2 cut(s)	4, 727
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	98, 552
BspQI	GCTCTTC	1 cut(s)	255
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	580, 771
BssECI	CCNNGG	1 cut(s)	718
BssMI	GATC	1 cut(s)	760
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	718
Bst2UI	CCWGG	1 cut(s)	704
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	255
BstACI	GRCGYC	1 cut(s)	42
BstAUI	TGTACA	1 cut(s)	249
BstC8I	GCNNGC	3 cut(s)	189, 204, 499
BstDEI	CTNAG	2 cut(s)	12, 735
BstENI	CCTNNNNNAGG	1 cut(s)	701
BstF5I	GGATG	1 cut(s)	610
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	1 cut(s)	763
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	1 cut(s)	760
BstMWI	GCNNNNNNNGC	1 cut(s)	745
BstNI	CCWGG	1 cut(s)	704
BstNSI	RCATGY	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	702
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	3 cut(s)	203, 242, 341
BsuRI	GGCC	1 cut(s)	428
BtsCI	GGATG	1 cut(s)	610
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	3 cut(s)	189, 204, 499
CaiI	CAGNNNCTG	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	427, 595
Csp6I	GTAC	6 cut(s)	30, 37, 62, 250, 580, 658
CviAII	CATG	5 cut(s)	482, 498, 502, 611, 685
CviQI	GTAC	6 cut(s)	30, 37, 62, 250, 580, 658
DdeI	CTNAG	2 cut(s)	12, 735
DpnI	GATC	1 cut(s)	762
DpnII	GATC	1 cut(s)	760
DraIII	CACNNNGTG	1 cut(s)	449
DriI	GACNNNNNGTC	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	255
Eam1105I	GACNNNNNGTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	718
Eco32I	GATATC	1 cut(s)	478
Eco47I	GGWCC	1 cut(s)	595
EcoNI	CCTNNNNNAGG	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	702
EcoRV	GATATC	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	718
EcoT22I	ATGCAT	1 cut(s)	503
ErhI	CCWWGG	1 cut(s)	718
FaeI	CATG	5 cut(s)	485, 501, 505, 614, 688
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FatI	CATG	5 cut(s)	481, 497, 501, 610, 684
Fnu4HI	GCNGC	3 cut(s)	192, 231, 330
FokI	GGATG	1 cut(s)	617
Fsp4HI	GCNGC	3 cut(s)	192, 231, 330
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	3 cut(s)	192, 231, 330
HaeIII	GGCC	1 cut(s)	428
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	5 cut(s)	485, 501, 505, 614, 688
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	3 cut(s)	16, 367, 562
HpaI	GTTAAC	1 cut(s)	217
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	5 cut(s)	107, 217, 252, 595, 776
Hpy188I	TCNGA	3 cut(s)	21, 344, 760
Hpy188III	TCNNGA	4 cut(s)	374, 449, 466, 566
Hpy8I	GTNNAC	5 cut(s)	107, 217, 252, 595, 776
Hpy99I	CGWCG	3 cut(s)	44, 47, 476
HpyAV	CCTTC	3 cut(s)	192, 314, 541
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	2 cut(s)	42, 471
HpyCH4V	TGCA	3 cut(s)	284, 501, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	745
HpyF3I	CTNAG	2 cut(s)	12, 735
HpySE526I	ACGT	2 cut(s)	42, 471
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	5 cut(s)	485, 501, 505, 614, 688
KspAI	GTTAAC	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	760
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	7 cut(s)	89, 102, 163, 184, 227, 445, 550
Lsp1109I	GCAGC	3 cut(s)	203, 242, 341
LweI	GCATC	3 cut(s)	145, 271, 523
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	2 cut(s)	42, 471
MaeIII	GTNAC	2 cut(s)	73, 449
MalI	GATC	1 cut(s)	762
MboI	GATC	1 cut(s)	760
MboII	GAAGA	3 cut(s)	272, 362, 383
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	5 cut(s)	139, 147, 171, 419, 649
MlyI	GAGTC	2 cut(s)	25, 571
MmeI	TCCRAC	3 cut(s)	104, 162, 205
MnlI	CCTC	4 cut(s)	16, 64, 516, 537
Mph1103I	ATGCAT	1 cut(s)	503
MseI	TTAA	4 cut(s)	216, 398, 405, 699
MspR9I	CCNGG	1 cut(s)	704
MvaI	CCWGG	1 cut(s)	704
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	745
NdeII	GATC	1 cut(s)	760
NlaIII	CATG	5 cut(s)	485, 501, 505, 614, 688
NlaIV	GGNNCC	2 cut(s)	98, 552
NmeAIII	GCCGAG	1 cut(s)	473
NmuCI	GTSAC	1 cut(s)	449
NsiI	ATGCAT	1 cut(s)	503
NspI	RCATGY	1 cut(s)	501
PaeI	GCATGC	1 cut(s)	501
PciSI	GCTCTTC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	367
Pfl23II	CGTACG	1 cut(s)	36
PkrI	GCNGC	3 cut(s)	193, 232, 331
PleI	GAGTC	2 cut(s)	24, 570
PpsI	GAGTC	2 cut(s)	24, 570
PsiI	TTATAA	2 cut(s)	459, 530
Psp6I	CCWGG	1 cut(s)	702
PspGI	CCWGG	1 cut(s)	702
PspLI	CGTACG	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	98, 552
PspPI	GGNCC	2 cut(s)	427, 595
PstNI	CAGNNNCTG	1 cut(s)	236
RsaI	GTAC	6 cut(s)	31, 38, 63, 251, 581, 659
RsaNI	GTAC	6 cut(s)	30, 37, 62, 250, 580, 658
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	4 cut(s)	216, 398, 405, 699
SatI	GCNGC	3 cut(s)	192, 231, 330
Sau3AI	GATC	1 cut(s)	760
Sau96I	GGNCC	2 cut(s)	427, 595
SchI	GAGTC	2 cut(s)	25, 571
ScrFI	CCNGG	1 cut(s)	704
SduI	GDGCHC	1 cut(s)	442
SfaNI	GCATC	3 cut(s)	145, 271, 523
SinI	GGWCC	1 cut(s)	595
SphI	GCATGC	1 cut(s)	501
Sse9I	AATT	5 cut(s)	139, 147, 171, 419, 649
SsiI	CCGC	3 cut(s)	50, 58, 410
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	702
StyI	CCWWGG	1 cut(s)	718
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	2 cut(s)	45, 474
TaqI	TCGA	3 cut(s)	8, 196, 474
TasI	AATT	5 cut(s)	139, 147, 171, 419, 649
TatI	WGTACW	3 cut(s)	29, 249, 657
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	4 cut(s)	216, 398, 405, 699
Tru9I	TTAA	4 cut(s)	216, 398, 405, 699
TscAI	CASTG	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	3 cut(s)	191, 230, 329
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	5 cut(s)	286, 476, 518, 599, 620
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	595
XagI	CCTNNNNNAGG	1 cut(s)	701
XapI	RAATTY	2 cut(s)	147, 419
XbaI	TCTAGA	1 cut(s)	373
XceI	RCATGY	1 cut(s)	501
XspI	CTAG	1 cut(s)	374
ZraI	GACGTC	1 cut(s)	43
Zsp2I	ATGCAT	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.