Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001684.1

Orthogroup ID

OG0001986

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3778

Gene Structure 3778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001684.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgttgtcatcatcgtctttccccaaacctccgacctcgccgcctaccttcgacgcccccgtaatgccattgaagagctccagagcagccagtgctccaccgagttatgcgtcctcacttacccatagttcttaccttcaatacgaggatttgtaccgttcttccttcctcaccaaatcaaatttatggtggtggaaattgcctttgtattatgttcttgattgcagttcttgtaactctacttggtgcattgagtataatagtcaggttattgaggagggtccaataactgtagctccaccagagacaattagaaagttggagcaggcagctgaaaggctggctaaaagtgttaactatgttggagcaagtagtgttgagtatctatacagtatggacactggcgagtactatttcttagagttgaaccctcggttgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003989 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0016020 GO:0016053 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022414 GO:0022622 GO:0030497 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944 GO:0072330 GO:0090421 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00254 ko00620 ko00640 ko01100 ko01110 ko01212 ko04152 ko04910 ko04922 map00061 map00254 map00620 map00640 map01100 map01110 map01212 map04152 map04910 map04922

Pfam Domains

Protein Families

ACC_central Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2 Carboxyl_trans

Protein Analysis

147

Amino Acids

16.63

Weight (kDa)

5.11

Isoelectric Point (pI)

63.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36160 AT1G36160 AT1G36180 AT1G36180 AT1G36180
fragaria_vesca	FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000
malus_domestica	MD08G1178000.v1.1 MD15G1363500.v1.1
prunus_persica	Prupe.1G512000_v2.0.a1 Prupe.1G512000_v2.0.a1 Prupe.1G512000_v2.0.a1
pyrus_communis	pycom08g15250 pycom15g32670
rosa_chinensis	RchiOBHm_Chr2g0140771 RchiOBHm_Chr2g0144971 RchiOBHm_Chr7g0239931
rosa_laevigata	RLG00000000716 RLG00000013564 RLG00000020589
rosa_multiflora	Rmu_co8457723.1_g000001 Rmu_sc0000540.1_g000024 Rmu_sc0001684.1_g000001 Rmu_sc0006326.1_g000027 Rmu_sc0041871.1_g000001 Rmu_sc0041872.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220610
rosa_rugosa	Rorug03G0235100 Rorug07G0331300 Rorug07G0331300
rosa_samantha	Rh1CG081500 Rh1DG087900 Rh4AG110300 Rh4DG033300 Rh5BG555900 Rh5CG578700 Rh5DG265800 Rh7AG485000 Rh7BG458000 Rh7DG470600
rosa_wichuraiana	Rw7G040680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	181
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	2 cut(s)	155, 410
AgsI	TTSAA	3 cut(s)	73, 140, 427
AluBI	AGCT	3 cut(s)	78, 296, 332
AluI	AGCT	3 cut(s)	78, 296, 332
Alw21I	GWGCWC	2 cut(s)	80, 97
Alw26I	GTCTC	1 cut(s)	299
ApeKI	GCWGC	2 cut(s)	86, 329
ApoI	RAATTY	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	80
Bbv12I	GWGCWC	2 cut(s)	80, 97
BbvI	GCAGC	2 cut(s)	98, 341
BcoDI	GTCTC	1 cut(s)	299
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	3 cut(s)	41, 87, 330
BlsI	GCNGC	3 cut(s)	42, 88, 331
BmcAI	AGTACT	1 cut(s)	410
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	64
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	431
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bse1I	ACTGG	2 cut(s)	90, 406
BseDI	CCNNGG	1 cut(s)	431
BseNI	ACTGG	2 cut(s)	90, 406
BseRI	GAGGAG	1 cut(s)	290
BseXI	GCAGC	2 cut(s)	98, 341
BsiHKAI	GWGCWC	2 cut(s)	80, 97
BsmAI	GTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	80, 97
BspACI	CCGC	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	282
BspQI	GCTCTTC	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	90, 406
BssECI	CCNNGG	1 cut(s)	431
BssNI	GRCGYC	1 cut(s)	54
Bst4CI	ACNGT	3 cut(s)	158, 292, 392
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	327, 342
BstDEI	CTNAG	1 cut(s)	418
BstMAI	GTCTC	1 cut(s)	299
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	98, 341
BtsIMutI	CAGTG	2 cut(s)	97, 399
Cac8I	GCNNGC	2 cut(s)	327, 342
Cfr13I	GGNCC	1 cut(s)	281
CseI	GACGC	2 cut(s)	62, 99
Csp6I	GTAC	2 cut(s)	154, 409
CviJI	RGCY	6 cut(s)	78, 89, 296, 332, 340, 344
CviKI_1	RGCY	6 cut(s)	78, 89, 296, 332, 340, 344
CviQI	GTAC	2 cut(s)	154, 409
DdeI	CTNAG	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	281
Eco53kI	GAGCTC	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	80
FaiI	YATR	8 cut(s)	108, 126, 187, 213, 258, 360, 388, 395
Fnu4HI	GCNGC	3 cut(s)	41, 87, 330
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	3 cut(s)	41, 87, 330
GluI	GCNGC	3 cut(s)	41, 87, 330
GsuI	CTGGAG	1 cut(s)	64
HgaI	GACGC	2 cut(s)	62, 99
Hin1I	GRCGYC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HpaI	GTTAAC	1 cut(s)	355
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	2 cut(s)	81, 218
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	58, 146, 175
HpyCH4III	ACNGT	3 cut(s)	158, 292, 392
HpyCH4V	TGCA	3 cut(s)	225, 249, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	1 cut(s)	418
Hsp92I	GRCGYC	1 cut(s)	54
KspAI	GTTAAC	1 cut(s)	355
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	5 cut(s)	83, 100, 301, 322, 365
LpnPI	CCDG	7 cut(s)	94, 103, 251, 311, 315, 326, 387
Lsp1109I	GCAGC	2 cut(s)	98, 341
MaeIII	GTNAC	1 cut(s)	233
MboII	GAAGA	2 cut(s)	85, 153
MhlI	GDGCHC	2 cut(s)	80, 97
MluCI	AATT	3 cut(s)	181, 197, 309
MmeI	TCCRAC	3 cut(s)	56, 300, 343
MnlI	CCTC	8 cut(s)	39, 46, 124, 139, 179, 268, 271, 441
MseI	TTAA	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	92
NlaIV	GGNNCC	1 cut(s)	282
PciSI	GCTCTTC	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PkrI	GCNGC	3 cut(s)	42, 88, 331
Psp124BI	GAGCTC	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	2 cut(s)	155, 410
RsaNI	GTAC	2 cut(s)	154, 409
SacI	GAGCTC	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	3 cut(s)	41, 87, 330
Sau96I	GGNCC	1 cut(s)	281
ScaI	AGTACT	1 cut(s)	410
SduI	GDGCHC	2 cut(s)	80, 97
SetI	ASST	8 cut(s)	31, 38, 50, 80, 138, 270, 298, 334
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	281
Sse9I	AATT	3 cut(s)	181, 197, 309
SsiI	CCGC	1 cut(s)	41
SstI	GAGCTC	1 cut(s)	80
TaaI	ACNGT	3 cut(s)	158, 292, 392
TaqI	TCGA	1 cut(s)	51
TasI	AATT	3 cut(s)	181, 197, 309
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	2 cut(s)	97, 406
TseI	GCWGC	2 cut(s)	86, 329
TspRI	CASTG	2 cut(s)	97, 406
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	1 cut(s)	181
ZrmI	AGTACT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.