Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041871.1

Orthogroup ID

OG0001986

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 862

Gene Structure 862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041871.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 320 bp

atgtgatcagcatggaaatgttgcagctttgcacagccgtgattgcagtgttcaaaggaggcaccagaagattattgaggagggtccaataactgtagctccaccagagacaattaaaaagttggagcaggcggctcgaaggttggctaaaagtgttaactatgttggagcagctactgttgagtatctgtacagtatggacactggcgagtactatttcttagagttgaaccctcggttgcaggtggagcacccagtcactgagtggatagcagaaataaatctgccagcagcccaagttgcagttgggatgggcattc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003989 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0016020 GO:0016053 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022414 GO:0022622 GO:0030497 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944 GO:0072330 GO:0090421 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00254 ko00620 ko00640 ko01100 ko01110 ko01212 ko04152 ko04910 ko04922 map00061 map00254 map00620 map00640 map01100 map01110 map01212 map04152 map04910 map04922

Pfam Domains

Protein Families

ACC_central Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2 Carboxyl_trans

Protein Analysis

106

Amino Acids

11.82

Weight (kDa)

5.76

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36160 AT1G36160 AT1G36180 AT1G36180 AT1G36180
fragaria_vesca	FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000 FvH4_5g38000
malus_domestica	MD08G1178000.v1.1 MD15G1363500.v1.1
prunus_persica	Prupe.1G512000_v2.0.a1 Prupe.1G512000_v2.0.a1 Prupe.1G512000_v2.0.a1
pyrus_communis	pycom08g15250 pycom15g32670
rosa_chinensis	RchiOBHm_Chr2g0140771 RchiOBHm_Chr2g0144971 RchiOBHm_Chr7g0239931
rosa_laevigata	RLG00000000716 RLG00000013564 RLG00000020589
rosa_multiflora	Rmu_co8457723.1_g000001 Rmu_sc0000540.1_g000024 Rmu_sc0001684.1_g000001 Rmu_sc0006326.1_g000027 Rmu_sc0041871.1_g000001 Rmu_sc0041872.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220610
rosa_rugosa	Rorug03G0235100 Rorug07G0331300 Rorug07G0331300
rosa_samantha	Rh1CG081500 Rh1DG087900 Rh4AG110300 Rh4DG033300 Rh5BG555900 Rh5CG578700 Rh5DG265800 Rh7AG485000 Rh7BG458000 Rh7DG470600
rosa_wichuraiana	Rw7G040680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	233
Acc36I	ACCTGC	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	61
AciI	CCGC	1 cut(s)	132
AdeI	CACNNNGTG	1 cut(s)	265
AfaI	GTAC	2 cut(s)	192, 213
AgsI	TTSAA	2 cut(s)	54, 230
AleI	CACNNNNGTG	1 cut(s)	37
AluBI	AGCT	3 cut(s)	27, 99, 174
AluI	AGCT	3 cut(s)	27, 99, 174
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	1 cut(s)	102
AlwNI	CAGNNNCTG	2 cut(s)	177, 261
ApeKI	GCWGC	3 cut(s)	24, 171, 291
AspS9I	GGNCC	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	253
BbvI	GCAGC	3 cut(s)	36, 183, 303
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	22
BcgI	CGANNNNNNTGC	2 cut(s)	117, 151
BclI	TGATCA	1 cut(s)	5
BcoDI	GTCTC	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	94
BfuAI	ACCTGC	1 cut(s)	233
BisI	GCNGC	4 cut(s)	25, 133, 172, 292
BlsI	GCNGC	4 cut(s)	26, 134, 173, 293
BmcAI	AGTACT	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	84
BmgT120I	GGNCC	1 cut(s)	84
BmiI	GGNNCC	2 cut(s)	63, 85
BmrI	ACTGGG	1 cut(s)	249
BmuI	ACTGGG	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	234
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bse1I	ACTGG	2 cut(s)	209, 255
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	253
BseNI	ACTGG	2 cut(s)	209, 255
BseRI	GAGGAG	1 cut(s)	93
BseXI	GCAGC	3 cut(s)	36, 183, 303
BshNI	GGYRCC	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	102
BsmI	GAATGC	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp1407I	TGTACA	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	5
BspACI	CCGC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	254
BspLI	GGNNCC	2 cut(s)	63, 85
BspMI	ACCTGC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	61
BsrGI	TGTACA	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	209, 255
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	5
Bst4CI	ACNGT	3 cut(s)	95, 179, 195
BstAUI	TGTACA	1 cut(s)	190
BstC8I	GCNNGC	2 cut(s)	130, 289
BstDEI	CTNAG	2 cut(s)	221, 262
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	1 cut(s)	8
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	1 cut(s)	5
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 248, 300
BstSFI	CTRYAG	1 cut(s)	94
BstV1I	GCAGC	3 cut(s)	36, 183, 303
BtsCI	GGATG	1 cut(s)	316
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	3 cut(s)	53, 202, 259
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	2 cut(s)	130, 289
CaiI	CAGNNNCTG	2 cut(s)	177, 261
Cfr13I	GGNCC	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	191, 212
CviAII	CATG	1 cut(s)	12
CviJI	RGCY	7 cut(s)	27, 37, 99, 135, 147, 174, 294
CviKI_1	RGCY	7 cut(s)	27, 37, 99, 135, 147, 174, 294
CviQI	GTAC	2 cut(s)	191, 212
DdeI	CTNAG	2 cut(s)	221, 262
DpnI	GATC	1 cut(s)	7
DpnII	GATC	1 cut(s)	5
DraIII	CACNNNGTG	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	84
FaeI	CATG	1 cut(s)	15
FaiI	YATR	3 cut(s)	13, 163, 198
FatI	CATG	1 cut(s)	11
FbaI	TGATCA	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	25, 133, 172, 292
Fsp4HI	GCNGC	4 cut(s)	25, 133, 172, 292
GluI	GCNGC	4 cut(s)	25, 133, 172, 292
Hin1II	CATG	1 cut(s)	15
HincII	GTYRAC	1 cut(s)	158
HindII	GTYRAC	1 cut(s)	158
HpaI	GTTAAC	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	3 cut(s)	95, 179, 195
HpyCH4V	TGCA	5 cut(s)	24, 32, 46, 242, 303
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 248, 300
HpyF3I	CTNAG	2 cut(s)	221, 262
Hsp92II	CATG	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	5
KspAI	GTTAAC	1 cut(s)	158
Kzo9I	GATC	1 cut(s)	5
LmnI	GCTCC	4 cut(s)	104, 125, 168, 248
LpnPI	CCDG	7 cut(s)	78, 114, 118, 190, 228, 268, 301
Lsp1109I	GCAGC	3 cut(s)	36, 183, 303
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	1 cut(s)	7
MboI	GATC	1 cut(s)	5
MboII	GAAGA	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	1 cut(s)	112
MmeI	TCCRAC	2 cut(s)	103, 146
MnlI	CCTC	4 cut(s)	52, 71, 74, 244
MseI	TTAA	2 cut(s)	115, 157
MslI	CAYNNNNRTG	2 cut(s)	16, 37
Mva1269I	GAATGC	1 cut(s)	316
MwoI	GCNNNNNNNGC	3 cut(s)	43, 248, 300
NdeII	GATC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	15
NlaIV	GGNNCC	2 cut(s)	63, 85
NmuCI	GTSAC	1 cut(s)	257
OliI	CACNNNNGTG	1 cut(s)	37
PaqCI	CACCTGC	1 cut(s)	233
PctI	GAATGC	1 cut(s)	316
PkrI	GCNGC	4 cut(s)	26, 134, 173, 293
PspN4I	GGNNCC	2 cut(s)	63, 85
PspPI	GGNCC	1 cut(s)	84
PstNI	CAGNNNCTG	2 cut(s)	177, 261
RsaI	GTAC	2 cut(s)	192, 213
RsaNI	GTAC	2 cut(s)	191, 212
RseI	CAYNNNNRTG	2 cut(s)	16, 37
SaqAI	TTAA	2 cut(s)	115, 157
SatI	GCNGC	4 cut(s)	25, 133, 172, 292
Sau3AI	GATC	1 cut(s)	5
Sau96I	GGNCC	1 cut(s)	84
ScaI	AGTACT	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	5 cut(s)	29, 101, 144, 176, 247
SfcI	CTRYAG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	84
SmiMI	CAYNNNNRTG	2 cut(s)	16, 37
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	1 cut(s)	132
TaaI	ACNGT	3 cut(s)	95, 179, 195
TaqI	TCGA	1 cut(s)	137
TasI	AATT	1 cut(s)	112
TatI	WGTACW	2 cut(s)	190, 211
TauI	GCSGC	1 cut(s)	135
Tru1I	TTAA	2 cut(s)	115, 157
Tru9I	TTAA	2 cut(s)	115, 157
TscAI	CASTG	3 cut(s)	53, 209, 266
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	3 cut(s)	24, 171, 291
Tsp45I	GTSAC	1 cut(s)	257
TspRI	CASTG	3 cut(s)	53, 209, 266
VpaK11BI	GGWCC	1 cut(s)	84
XcmI	CCANNNNNNNNNTGG	2 cut(s)	262, 303
ZrmI	AGTACT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.