Rh3BG319000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
32706129 .. 32719980
13852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG319000.1

Sequence Viewer

Length: 1830 bp
ATGGTTCACGCGTTGACGAACAGAAACAGGTGGTTGTTGGGTCTTCCTCTCTCTGAATCTGAGCACACCCTGTTTCAAAGTCCTGACTTTGAACGAGATTCATTGCCGGAATCTTTGCTCAGGGAAGATGATCTGTTCTATGAGACTGCAAAGTCTTCTGTTCAAGCAGCCTTTGGAGCATGCAATGTTGAAGCAGGGAAGCGAGATAATATTCTAATGCTCGACAGAAGAAGTATATCCACAGCCTTGTCATCGCCATGCCTTGATGATCTGACTACTAAGGGGCTTCACCTTATAGCTACTACACTTGCAGCAGGGTCAGTCAAGTTTGAGAACACTCGTTGCGAGATGAAGAAGTTTATCAGAGAATCTCTGCAAAAAAAATTTGGAAGCCAAAATAATCATGATGATGATGAGTTGGGCATTTTTAAGCAACTATCTCAATATCTTAGTGACCCACAAAATTTCCGAGATAAGGTTGTTACAGTTCTTTCCAGATCACAGTCTCAACGTCTTGCTGTTAGAAAGGTACTGGATGGACTTGAGGACTTGCCTTCTGAGACCCTATTTGCAATGAGCAGAAAGCTTAAAGGAGTACAACATTTACCTCAGTTACATCAAAAGAAAAATACATTGTACAAAAAGACTTTGATTGATCAATTGCGGAAAACTTGTGACACGATGCTTTCCGAACTTGGTACAGGAGGTGAACTGCAGGAATCACTAGCCAAAGCCATGGCAGTAGCAGGCCTATCAGTGAAGTTACAACCAGGTCTCCATAATTCGACTGTAACAGAATTTCGCCAATTTTCACAAGAGATAATGATACTGCAGGATGATATTGCAAGGGCTATTTGGCTAGTTGAAAAAAAGGTTAGCTTGCAAGAGCTCGAAAAGTTGAAGACTATATTAGGCCAAGATGCTGAAGTATCAAACAGGAGCTTACGATATGCAATTAAGAAAATGCTAACTGAATATCTCTTCGAGTGTGGTGATATGGATACAATTCCAAAGTCATTATTAGAAGCTCTTGATATTATCAACATGTCACAAAACAAGCTGCATAGACCCATCTTAAAGGATGAAATTGAAGAAGAGGTGGAATGTATATTGAATGTGAGTGCTCAGGCAAAGCAGATTGTATGGGATATGTTCCCTGACCATGAGTTAGATCTAGACTTTGCTGAGGCATATGTTGAGGAAATGGAGGATGAAGACGATGATGAGGATGACGAGGATGATGGTGATGATAGGTCTAGCAATGATGATAACAACCATAATCATGGTTCGCCACAGGAACAAAGAATATCTGGAAGTGACAGATCTCACTCTGATGATTCACATTATGAGGATGAAAGCACTGGGGAAACAATGTTCTCCAATCAAGGAACTTCTCATGATTTCAATGGTATTAGGCGAGGGTTTCCTGGGACTTCTACTGAGAGACATGAACCTGAACATGACACTGGAATGGATACGGAAGACCCCTTGCATGTCGAGCCAGATGATGTGCATAAACAAACCACTTGTAACCAATACCTTGCAATTCAAGAAGTGTCCGATAAGACAAGCATGATAGCCCATGATCTTGTTGGTCATATGTTGGAGGAGTTTGCACAGAAAGATGGCTTGGATTTGGACTGGGATGATACATTATATCTGAAAGGTGATTGTGCAACTCGAGAAGATTCAGGAGAAAAAAATGCCGTCCGGGATATGTTGTCATTATCAAACGCACTTAGACCAGAGTATGGACCAGAAGAGAACATCGAGGATGATACATCAGACTCAAAGTGGAAGAGGTTAATGCAGCATCCTGATATTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

609

Amino Acids

69.17

Weight (kDa)

4.68

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 151
AccB7I CCANNNNNTGG 1 cut(s) 1751
AccII CGCG 1 cut(s) 11
AciI CCGC 1 cut(s) 664
AcsI RAATTY 3 cut(s) 383, 463, 797
AcuI CTGAAG 1 cut(s) 945
AfaI GTAC 4 cut(s) 531, 597, 638, 700
AfiI CCNNNNNNNGG 2 cut(s) 475, 1751
AflIII ACRYGT 2 cut(s) 9, 1044
AjnI CCWGG 2 cut(s) 769, 1426
AjuI GAANNNNNNNTTGG 2 cut(s) 1613, 1645
AloI GAACNNNNNNTCC 2 cut(s) 1358, 1390
AluBI AGCT 7 cut(s) 299, 586, 879, 889, 942, 1028, 1060
AluI AGCT 7 cut(s) 299, 586, 879, 889, 942, 1028, 1060
Alw21I GWGCWC 3 cut(s) 66, 891, 1126
Alw26I GTCTC 5 cut(s) 137, 510, 554, 779, 1438
Ama87I CYCGRG 1 cut(s) 1680
AoxI GGCC 2 cut(s) 748, 913
ApeKI GCWGC 4 cut(s) 167, 311, 1060, 1810
ApoI RAATTY 3 cut(s) 383, 463, 797
AspS9I GGNCC 1 cut(s) 1754
AsuC2I CCSGG 1 cut(s) 1712
AsuHPI GGTGA 5 cut(s) 281, 719, 1004, 1256, 1679
AvaI CYCGRG 1 cut(s) 1680
AvaII GGWCC 1 cut(s) 1754
BanII GRGCYC 1 cut(s) 891
BbsI GAAGAC 5 cut(s) 35, 147, 908, 1221, 1488
Bbv12I GWGCWC 3 cut(s) 66, 891, 1126
BbvCI CCTCAGC 1 cut(s) 1185
BbvI GCAGC 4 cut(s) 179, 323, 1047, 1822
BccI CCATC 4 cut(s) 530, 1079, 1235, 1619
BceAI ACGGC 1 cut(s) 1691
BciT130I CCWGG 2 cut(s) 771, 1428
BciVI GTATCC 2 cut(s) 994, 1468
BclI TGATCA 1 cut(s) 655
BcnI CCSGG 1 cut(s) 1712
BcoDI GTCTC 5 cut(s) 137, 510, 554, 779, 1438
BfaI CTAG 4 cut(s) 725, 860, 1175, 1257
BfmI CTRYAG 2 cut(s) 713, 830
BfuI GTATCC 2 cut(s) 994, 1468
BglII AGATCT 2 cut(s) 1171, 1322
BisI GCNGC 4 cut(s) 168, 312, 1061, 1811
BlsI GCNGC 4 cut(s) 169, 313, 1062, 1812
Bme1390I CCNGG 3 cut(s) 771, 1428, 1712
Bme18I GGWCC 1 cut(s) 1754
BmeT110I CYCGRG 1 cut(s) 1680
BmgT120I GGNCC 1 cut(s) 1754
BmrFI CCNGG 3 cut(s) 771, 1428, 1712
BmrI ACTGGG 2 cut(s) 1371, 1651
BmsI GCATC 3 cut(s) 672, 910, 1822
BmuI ACTGGG 2 cut(s) 1371, 1651
BpiI GAAGAC 5 cut(s) 35, 147, 908, 1221, 1488
Bpu10I CCTNAGC 3 cut(s) 119, 1125, 1185
BpuEI CTTGAG 1 cut(s) 563
BpuMI CCSGG 1 cut(s) 1712
BsaI GGTCTC 2 cut(s) 554, 779
BsaJI CCNNGG 2 cut(s) 735, 1427
BsaXI ACNNNNNCTCC 2 cut(s) 759, 789
Bsc4I CCNNNNNNNGG 2 cut(s) 475, 1751
Bse1I ACTGG 4 cut(s) 537, 1366, 1471, 1646
Bse3DI GCAATG 4 cut(s) 101, 190, 579, 1267
BseBI CCWGG 2 cut(s) 771, 1428
BseDI CCNNGG 2 cut(s) 735, 1427
BseLI CCNNNNNNNGG 2 cut(s) 475, 1751
BseMI GCAATG 4 cut(s) 101, 190, 579, 1267
BseMII CTCAG 7 cut(s) 51, 133, 549, 623, 1139, 1176, 1431
BseNI ACTGG 4 cut(s) 537, 1366, 1471, 1646
BseRI GAGGAG 1 cut(s) 1622
BseXI GCAGC 4 cut(s) 179, 323, 1047, 1822
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 2 cut(s) 750, 915
BsiHKAI GWGCWC 3 cut(s) 66, 891, 1126
BsiHKCI CYCGRG 1 cut(s) 1680
BsiSI CCGG 2 cut(s) 107, 1711
BslFI GGGAC 1 cut(s) 1444
BslI CCNNNNNNNGG 2 cut(s) 475, 1751
BsmAI GTCTC 5 cut(s) 137, 510, 554, 779, 1438
BsmFI GGGAC 1 cut(s) 1444
BsnI GGCC 2 cut(s) 750, 915
Bso31I GGTCTC 2 cut(s) 554, 779
BsoBI CYCGRG 1 cut(s) 1680
Bsp1286I GDGCHC 3 cut(s) 66, 891, 1126
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 7 cut(s) 130, 268, 497, 655, 1171, 1322, 1585
Bsp19I CCATGG 1 cut(s) 735
BspACI CCGC 1 cut(s) 664
BspANI GGCC 2 cut(s) 750, 915
BspCNI CTCAG 7 cut(s) 52, 132, 550, 622, 1138, 1177, 1432
BspFNI CGCG 1 cut(s) 11
BspHI TCATGA 2 cut(s) 403, 1396
BspMAI CTGCAG 2 cut(s) 717, 834
BspTNI GGTCTC 2 cut(s) 554, 779
BsrDI GCAATG 4 cut(s) 101, 190, 579, 1267
BsrGI TGTACA 1 cut(s) 636
BsrI ACTGG 4 cut(s) 537, 1366, 1471, 1646
BssECI CCNNGG 2 cut(s) 735, 1427
BssMI GATC 7 cut(s) 130, 268, 497, 655, 1171, 1322, 1585
BssT1I CCWWGG 1 cut(s) 735
Bst2UI CCWGG 2 cut(s) 771, 1428
Bst4CI ACNGT 3 cut(s) 487, 504, 790
Bst6I CTCTTC 4 cut(s) 986, 1089, 1755, 1793
BstAUI TGTACA 1 cut(s) 636
BstC8I GCNNGC 3 cut(s) 181, 748, 881
BstDSI CCRYGG 1 cut(s) 735
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 7 cut(s) 133, 271, 500, 658, 1174, 1325, 1588
BstMAI GTCTC 5 cut(s) 137, 510, 554, 779, 1438
BstMBI GATC 7 cut(s) 130, 268, 497, 655, 1171, 1322, 1585
BstMWI GCNNNNNNNGC 2 cut(s) 176, 1498
BstNI CCWGG 2 cut(s) 771, 1428
BstNSI RCATGY 3 cut(s) 183, 1048, 1496
BstSCI CCNGG 3 cut(s) 769, 1426, 1710
BstSFI CTRYAG 2 cut(s) 713, 830
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 4 cut(s) 179, 323, 1047, 1822
BstV2I GAAGAC 5 cut(s) 35, 147, 908, 1221, 1488
BstX2I RGATCY 2 cut(s) 1171, 1322
BstXI CCANNNNNNTGG 2 cut(s) 736, 1283
BstYI RGATCY 2 cut(s) 1171, 1322
BsuI GTATCC 2 cut(s) 994, 1468
BsuRI GGCC 2 cut(s) 750, 915
BtgI CCRYGG 1 cut(s) 735
BtgZI GCGATG 1 cut(s) 237
BtsIMutI CAGTG 3 cut(s) 762, 1359, 1464
Cac8I GCNNGC 3 cut(s) 181, 748, 881
CciI TCATGA 2 cut(s) 403, 1396
Cfr13I GGNCC 1 cut(s) 1754
CsiI ACCWGGT 1 cut(s) 769
Csp6I GTAC 4 cut(s) 530, 596, 637, 699
CviQI GTAC 4 cut(s) 530, 596, 637, 699
DpnI GATC 7 cut(s) 132, 270, 499, 657, 1173, 1324, 1587
DpnII GATC 7 cut(s) 130, 268, 497, 655, 1171, 1322, 1585
DrdI GACNNNNNNGTC 1 cut(s) 151
DseDI GACNNNNNNGTC 1 cut(s) 151
Eam1104I CTCTTC 4 cut(s) 986, 1089, 1755, 1793
EarI CTCTTC 4 cut(s) 986, 1089, 1755, 1793
Ecl136II GAGCTC 1 cut(s) 889
Eco130I CCWWGG 1 cut(s) 735
Eco147I AGGCCT 1 cut(s) 750
Eco24I GRGCYC 1 cut(s) 891
Eco31I GGTCTC 2 cut(s) 554, 779
Eco47I GGWCC 1 cut(s) 1754
Eco53kI GAGCTC 1 cut(s) 889
Eco57I CTGAAG 1 cut(s) 945
Eco88I CYCGRG 1 cut(s) 1680
EcoICRI GAGCTC 1 cut(s) 889
EcoRII CCWGG 2 cut(s) 769, 1426
EcoT14I CCWWGG 1 cut(s) 735
EcoT38I GRGCYC 1 cut(s) 891
ErhI CCWWGG 1 cut(s) 735
FalI AAGNNNNNCTT 2 cut(s) 863, 895
FaqI GGGAC 1 cut(s) 1444
FauNDI CATATG 2 cut(s) 1192, 1599
FbaI TGATCA 1 cut(s) 655
Fnu4HI GCNGC 4 cut(s) 168, 312, 1061, 1811
FriOI GRGCYC 1 cut(s) 891
Fsp4HI GCNGC 4 cut(s) 168, 312, 1061, 1811
FspBI CTAG 4 cut(s) 725, 860, 1175, 1257
GluI GCNGC 4 cut(s) 168, 312, 1061, 1811
HaeIII GGCC 2 cut(s) 750, 915
HapII CCGG 2 cut(s) 107, 1711
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 8 cut(s) 56, 98, 110, 368, 719, 1337, 1688, 1787
HpaII CCGG 2 cut(s) 107, 1711
HphI GGTGA 5 cut(s) 281, 719, 1004, 1256, 1679
Hpy166II GTNNAC 3 cut(s) 7, 15, 710
Hpy8I GTNNAC 3 cut(s) 7, 15, 710
HpyAV CCTTC 1 cut(s) 564
HpyCH4III ACNGT 3 cut(s) 487, 504, 790
HpyCH4IV ACGT 1 cut(s) 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 1498
HpySE526I ACGT 1 cut(s) 511
Ksp22I TGATCA 1 cut(s) 655
Kzo9I GATC 7 cut(s) 130, 268, 497, 655, 1171, 1322, 1585
LmnI GCTCC 2 cut(s) 176, 939
Lsp1109I GCAGC 4 cut(s) 179, 323, 1047, 1822
LweI GCATC 3 cut(s) 672, 910, 1822
MabI ACCWGGT 1 cut(s) 769
MaeI CTAG 4 cut(s) 725, 860, 1175, 1257
MaeII ACGT 1 cut(s) 511
MaeIII GTNAC 9 cut(s) 452, 481, 612, 674, 762, 790, 1047, 1316, 1529
MalI GATC 7 cut(s) 132, 270, 499, 657, 1173, 1324, 1587
MboI GATC 7 cut(s) 130, 268, 497, 655, 1171, 1322, 1585
MfeI CAATTG 1 cut(s) 659
MflI RGATCY 2 cut(s) 1171, 1322
MhlI GDGCHC 3 cut(s) 66, 891, 1126
MluI ACGCGT 1 cut(s) 9
MlyI GAGTC 1 cut(s) 1781
MmeI TCCRAC 1 cut(s) 1584
MseI TTAA 5 cut(s) 429, 588, 957, 1076, 1805
MslI CAYNNNNRTG 5 cut(s) 256, 408, 1281, 1332, 1469
MspI CCGG 2 cut(s) 107, 1711
MspR9I CCNGG 3 cut(s) 771, 1428, 1712
MunI CAATTG 1 cut(s) 659
MvaI CCWGG 2 cut(s) 771, 1428
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 176, 1498
NciI CCSGG 1 cut(s) 1712
NcoI CCATGG 1 cut(s) 735
NdeI CATATG 2 cut(s) 1192, 1599
NdeII GATC 7 cut(s) 130, 268, 497, 655, 1171, 1322, 1585
NmuCI GTSAC 4 cut(s) 452, 674, 1047, 1316
NspI RCATGY 3 cut(s) 183, 1048, 1496
PaeI GCATGC 1 cut(s) 183
PaeR7I CTCGAG 1 cut(s) 1680
PagI TCATGA 2 cut(s) 403, 1396
PceI AGGCCT 1 cut(s) 750
PciI ACATGT 1 cut(s) 1044
PfeI GAWTC 7 cut(s) 56, 98, 110, 368, 719, 1337, 1688
PflMI CCANNNNNTGG 1 cut(s) 1751
PfoI TCCNGGA 1 cut(s) 1710
PkrI GCNGC 4 cut(s) 169, 313, 1062, 1812
PleI GAGTC 1 cut(s) 1781
PpsI GAGTC 1 cut(s) 1781
PscI ACATGT 1 cut(s) 1044
Psp124BI GAGCTC 1 cut(s) 891
Psp6I CCWGG 2 cut(s) 769, 1426
PspGI CCWGG 2 cut(s) 769, 1426
PspPI GGNCC 1 cut(s) 1754
PstI CTGCAG 2 cut(s) 717, 834
PsuI RGATCY 2 cut(s) 1171, 1322
RsaI GTAC 4 cut(s) 531, 597, 638, 700
RsaNI GTAC 4 cut(s) 530, 596, 637, 699
RseI CAYNNNNRTG 5 cut(s) 256, 408, 1281, 1332, 1469
SacI GAGCTC 1 cut(s) 891
SaqAI TTAA 5 cut(s) 429, 588, 957, 1076, 1805
SatI GCNGC 4 cut(s) 168, 312, 1061, 1811
Sau3AI GATC 7 cut(s) 130, 268, 497, 655, 1171, 1322, 1585
Sau96I GGNCC 1 cut(s) 1754
SchI GAGTC 1 cut(s) 1781
ScrFI CCNGG 3 cut(s) 771, 1428, 1712
SduI GDGCHC 3 cut(s) 66, 891, 1126
SexAI ACCWGGT 1 cut(s) 769
SfaNI GCATC 3 cut(s) 672, 910, 1822
SfcI CTRYAG 2 cut(s) 713, 830
Sfr274I CTCGAG 1 cut(s) 1680
SinI GGWCC 1 cut(s) 1754
SlaI CTCGAG 1 cut(s) 1680
SmiMI CAYNNNNRTG 5 cut(s) 256, 408, 1281, 1332, 1469
SmlI CTYRAG 2 cut(s) 542, 1680
SmoI CTYRAG 2 cut(s) 542, 1680
SphI GCATGC 1 cut(s) 183
SseBI AGGCCT 1 cut(s) 750
SsiI CCGC 1 cut(s) 664
SspI AATATT 1 cut(s) 211
SspMI CTAG 4 cut(s) 725, 860, 1175, 1257
SstI GAGCTC 1 cut(s) 891
StuI AGGCCT 1 cut(s) 750
StyD4I CCNGG 3 cut(s) 769, 1426, 1710
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 3 cut(s) 487, 504, 790
TaiI ACGT 1 cut(s) 514
TaqI TCGA 7 cut(s) 222, 785, 891, 984, 1497, 1681, 1770
TatI WGTACW 2 cut(s) 595, 636
TfiI GAWTC 7 cut(s) 56, 98, 110, 368, 719, 1337, 1688
Tru1I TTAA 5 cut(s) 429, 588, 957, 1076, 1805
Tru9I TTAA 5 cut(s) 429, 588, 957, 1076, 1805
TscAI CASTG 3 cut(s) 762, 1366, 1471
TseFI GTSAC 4 cut(s) 452, 674, 1047, 1316
TseI GCWGC 4 cut(s) 167, 311, 1060, 1810
Tsp45I GTSAC 4 cut(s) 452, 674, 1047, 1316
TspDTI ATGAA 6 cut(s) 90, 365, 1098, 1227, 1368, 1464
TspGWI ACGGA 1 cut(s) 1493
TspRI CASTG 3 cut(s) 762, 1366, 1471
Van91I CCANNNNNTGG 1 cut(s) 1751
VpaK11BI GGWCC 1 cut(s) 1754
XapI RAATTY 3 cut(s) 383, 463, 797
XbaI TCTAGA 1 cut(s) 1174
XceI RCATGY 3 cut(s) 183, 1048, 1496
XcmI CCANNNNNNNNNTGG 1 cut(s) 1589
XhoI CTCGAG 1 cut(s) 1680
XspI CTAG 4 cut(s) 725, 860, 1175, 1257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.