No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G56660 AT1G56660 |
| fragaria_vesca | FvH4_1g28340 FvH4_1g28340 FvH4_1g28340 |
| malus_domestica | MD14G1004000.v1.1 |
| prunus_persica | Prupe.7G006500_v2.0.a1 |
| pyrus_communis | pycom12g00470 |
| rosa_chinensis | RchiOBHm_Chr3g0496751 |
| rosa_laevigata | RLG00000022508 |
| rosa_multiflora | Rmu_co8366833.1_g000001 Rmu_sc0000542.1_g000011 Rmu_sc0001832.1_g000015 |
| rosa_roxburghii | Rroxscaffold_6G00388720 |
| rosa_rugosa | Rorug03G0286300 Rorug03G0286400 |
| rosa_samantha | Rh3AG331000 Rh3BG367000 Rh3BG367200 Rh3BG367400 Rh3BG367600 Rh3CG363700 Rh3DG367000 |
| rosa_wichuraiana | Rw3G028990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 1184 |
| AclWI | GGATC | 2 cut(s) | 333, 414 |
| AcsI | RAATTY | 1 cut(s) | 50 |
| AfaI | GTAC | 1 cut(s) | 115 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 520 |
| AgsI | TTSAA | 4 cut(s) | 17, 146, 226, 932 |
| AjiI | CACGTC | 1 cut(s) | 823 |
| AjnI | CCWGG | 2 cut(s) | 85, 852 |
| AluBI | AGCT | 5 cut(s) | 529, 574, 1063, 1075, 1148 |
| AluI | AGCT | 5 cut(s) | 529, 574, 1063, 1075, 1148 |
| Alw26I | GTCTC | 3 cut(s) | 177, 461, 1154 |
| AlwI | GGATC | 2 cut(s) | 333, 414 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1075 |
| AoxI | GGCC | 1 cut(s) | 906 |
| ApeKI | GCWGC | 1 cut(s) | 1175 |
| ApoI | RAATTY | 1 cut(s) | 50 |
| AspLEI | GCGC | 1 cut(s) | 497 |
| AspS9I | GGNCC | 2 cut(s) | 850, 1154 |
| AsuHPI | GGTGA | 2 cut(s) | 49, 101 |
| AvaII | GGWCC | 2 cut(s) | 850, 1154 |
| BanII | GRGCYC | 2 cut(s) | 305, 386 |
| BbsI | GAAGAC | 4 cut(s) | 12, 440, 702, 851 |
| BbvI | GCAGC | 1 cut(s) | 1187 |
| BccI | CCATC | 6 cut(s) | 163, 308, 316, 389, 671, 1082 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1036, 1070 |
| BciT130I | CCWGG | 2 cut(s) | 87, 854 |
| BcoDI | GTCTC | 3 cut(s) | 177, 461, 1154 |
| BfaI | CTAG | 2 cut(s) | 122, 530 |
| BfoI | RGCGCY | 1 cut(s) | 498 |
| BisI | GCNGC | 2 cut(s) | 1176, 1185 |
| BlsI | GCNGC | 2 cut(s) | 1177, 1186 |
| Bme1390I | CCNGG | 2 cut(s) | 87, 854 |
| Bme18I | GGWCC | 2 cut(s) | 850, 1154 |
| BmgBI | CACGTC | 1 cut(s) | 823 |
| BmgT120I | GGNCC | 2 cut(s) | 850, 1154 |
| BmrFI | CCNGG | 2 cut(s) | 87, 854 |
| BpiI | GAAGAC | 4 cut(s) | 12, 440, 702, 851 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1151, 1183 |
| BpmI | CTGGAG | 1 cut(s) | 1097 |
| BpuEI | CTTGAG | 1 cut(s) | 1134 |
| BsaJI | CCNNGG | 3 cut(s) | 72, 96, 498 |
| BsaWI | WCCGGW | 1 cut(s) | 1156 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 520 |
| BseBI | CCWGG | 2 cut(s) | 87, 854 |
| BseDI | CCNNGG | 3 cut(s) | 72, 96, 498 |
| BseGI | GGATG | 3 cut(s) | 508, 679, 895 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 520 |
| BseMII | CTCAG | 2 cut(s) | 318, 399 |
| BseRI | GAGGAG | 4 cut(s) | 659, 872, 971, 974 |
| BseXI | GCAGC | 1 cut(s) | 1187 |
| BshFI | GGCC | 1 cut(s) | 908 |
| BsiSI | CCGG | 1 cut(s) | 1157 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 520 |
| BsmAI | GTCTC | 3 cut(s) | 177, 461, 1154 |
| BsnI | GGCC | 1 cut(s) | 908 |
| Bsp1286I | GDGCHC | 2 cut(s) | 305, 386 |
| Bsp143I | GATC | 2 cut(s) | 325, 406 |
| BspACI | CCGC | 1 cut(s) | 1184 |
| BspANI | GGCC | 1 cut(s) | 908 |
| BspCNI | CTCAG | 2 cut(s) | 317, 398 |
| BspHI | TCATGA | 1 cut(s) | 1128 |
| BspPI | GGATC | 2 cut(s) | 333, 414 |
| BspQI | GCTCTTC | 3 cut(s) | 278, 359, 519 |
| BssECI | CCNNGG | 3 cut(s) | 72, 96, 498 |
| BssMI | GATC | 2 cut(s) | 325, 406 |
| BssT1I | CCWWGG | 3 cut(s) | 72, 96, 498 |
| Bst2UI | CCWGG | 2 cut(s) | 87, 854 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1109 |
| BstDEI | CTNAG | 3 cut(s) | 58, 304, 385 |
| BstF5I | GGATG | 3 cut(s) | 508, 679, 895 |
| BstH2I | RGCGCY | 1 cut(s) | 498 |
| BstHHI | GCGC | 1 cut(s) | 497 |
| BstKTI | GATC | 2 cut(s) | 328, 409 |
| BstMAI | GTCTC | 3 cut(s) | 177, 461, 1154 |
| BstMBI | GATC | 2 cut(s) | 325, 406 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1109, 1118, 1181, 1184 |
| BstNI | CCWGG | 2 cut(s) | 87, 854 |
| BstSCI | CCNGG | 2 cut(s) | 85, 852 |
| BstV1I | GCAGC | 1 cut(s) | 1187 |
| BstV2I | GAAGAC | 4 cut(s) | 12, 440, 702, 851 |
| BsuRI | GGCC | 1 cut(s) | 908 |
| BtrI | CACGTC | 1 cut(s) | 823 |
| BtsCI | GGATG | 3 cut(s) | 508, 679, 895 |
| BtsI | GCAGTG | 1 cut(s) | 1185 |
| BtsIMutI | CAGTG | 1 cut(s) | 1185 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1075 |
| CciI | TCATGA | 1 cut(s) | 1128 |
| CfoI | GCGC | 1 cut(s) | 497 |
| Cfr13I | GGNCC | 2 cut(s) | 850, 1154 |
| CsiI | ACCWGGT | 1 cut(s) | 85 |
| Csp6I | GTAC | 1 cut(s) | 114 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 277, 312, 358, 393 |
| CviAII | CATG | 1 cut(s) | 1129 |
| CviJI | RGCY | 9 cut(s) | 157, 303, 384, 529, 574, 908, 1063, 1075, 1148 |
| CviKI_1 | RGCY | 9 cut(s) | 157, 303, 384, 529, 574, 908, 1063, 1075, 1148 |
| CviQI | GTAC | 1 cut(s) | 114 |
| DdeI | CTNAG | 3 cut(s) | 58, 304, 385 |
| DpnI | GATC | 2 cut(s) | 327, 408 |
| DpnII | GATC | 2 cut(s) | 325, 406 |
| Eco130I | CCWWGG | 3 cut(s) | 72, 96, 498 |
| Eco24I | GRGCYC | 2 cut(s) | 305, 386 |
| Eco32I | GATATC | 1 cut(s) | 1126 |
| Eco47I | GGWCC | 2 cut(s) | 850, 1154 |
| EcoRI | GAATTC | 1 cut(s) | 50 |
| EcoRII | CCWGG | 2 cut(s) | 85, 852 |
| EcoRV | GATATC | 1 cut(s) | 1126 |
| EcoT14I | CCWWGG | 3 cut(s) | 72, 96, 498 |
| EcoT38I | GRGCYC | 2 cut(s) | 305, 386 |
| ErhI | CCWWGG | 3 cut(s) | 72, 96, 498 |
| FaeI | CATG | 1 cut(s) | 1132 |
| FaiI | YATR | 2 cut(s) | 554, 1130 |
| FatI | CATG | 1 cut(s) | 1128 |
| Fnu4HI | GCNGC | 2 cut(s) | 1176, 1185 |
| FokI | GGATG | 3 cut(s) | 515, 686, 902 |
| FriOI | GRGCYC | 2 cut(s) | 305, 386 |
| Fsp4HI | GCNGC | 2 cut(s) | 1176, 1185 |
| FspBI | CTAG | 2 cut(s) | 122, 530 |
| GlaI | GCGC | 1 cut(s) | 496 |
| GluI | GCNGC | 2 cut(s) | 1176, 1185 |
| GsuI | CTGGAG | 1 cut(s) | 1097 |
| HaeII | RGCGCY | 1 cut(s) | 498 |
| HaeIII | GGCC | 1 cut(s) | 908 |
| HapII | CCGG | 1 cut(s) | 1157 |
| HhaI | GCGC | 1 cut(s) | 497 |
| Hin1II | CATG | 1 cut(s) | 1132 |
| Hin6I | GCGC | 1 cut(s) | 495 |
| HinP1I | GCGC | 1 cut(s) | 495 |
| HinfI | GANTC | 4 cut(s) | 92, 109, 506, 950 |
| HpaII | CCGG | 1 cut(s) | 1157 |
| HphI | GGTGA | 2 cut(s) | 49, 101 |
| Hpy188I | TCNGA | 3 cut(s) | 307, 388, 955 |
| Hpy188III | TCNNGA | 4 cut(s) | 67, 921, 1129, 1191 |
| HpyCH4IV | ACGT | 1 cut(s) | 822 |
| HpyCH4V | TGCA | 4 cut(s) | 477, 1047, 1112, 1175 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1109, 1118, 1181, 1184 |
| HpyF3I | CTNAG | 3 cut(s) | 58, 304, 385 |
| HpySE526I | ACGT | 1 cut(s) | 822 |
| Hsp92II | CATG | 1 cut(s) | 1132 |
| HspAI | GCGC | 1 cut(s) | 495 |
| Kzo9I | GATC | 2 cut(s) | 325, 406 |
| LguI | GCTCTTC | 3 cut(s) | 278, 359, 519 |
| LmnI | GCTCC | 2 cut(s) | 631, 868 |
| LpnPI | CCDG | 8 cut(s) | 72, 99, 219, 839, 866, 934, 1061, 1170 |
| Lsp1109I | GCAGC | 1 cut(s) | 1187 |
| MabI | ACCWGGT | 1 cut(s) | 85 |
| MaeI | CTAG | 2 cut(s) | 122, 530 |
| MaeII | ACGT | 1 cut(s) | 822 |
| MaeIII | GTNAC | 2 cut(s) | 89, 138 |
| MalI | GATC | 2 cut(s) | 327, 408 |
| MboI | GATC | 2 cut(s) | 325, 406 |
| MhlI | GDGCHC | 2 cut(s) | 305, 386 |
| MluCI | AATT | 1 cut(s) | 50 |
| MlyI | GAGTC | 4 cut(s) | 86, 103, 500, 959 |
| MseI | TTAA | 1 cut(s) | 615 |
| MslI | CAYNNNNRTG | 1 cut(s) | 879 |
| MspI | CCGG | 1 cut(s) | 1157 |
| MspR9I | CCNGG | 2 cut(s) | 87, 854 |
| MvaI | CCWGG | 2 cut(s) | 87, 854 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1109, 1118, 1181, 1184 |
| NdeII | GATC | 2 cut(s) | 325, 406 |
| NlaIII | CATG | 1 cut(s) | 1132 |
| NmuCI | GTSAC | 2 cut(s) | 89, 138 |
| PagI | TCATGA | 1 cut(s) | 1128 |
| PciSI | GCTCTTC | 3 cut(s) | 278, 359, 519 |
| PflFI | GACNNNGTC | 1 cut(s) | 136 |
| PkrI | GCNGC | 2 cut(s) | 1177, 1186 |
| PleI | GAGTC | 4 cut(s) | 86, 103, 500, 958 |
| PpsI | GAGTC | 4 cut(s) | 86, 103, 500, 958 |
| Psp6I | CCWGG | 2 cut(s) | 85, 852 |
| PspGI | CCWGG | 2 cut(s) | 85, 852 |
| PspPI | GGNCC | 2 cut(s) | 850, 1154 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1075 |
| PsyI | GACNNNGTC | 1 cut(s) | 136 |
| RsaI | GTAC | 1 cut(s) | 115 |
| RsaNI | GTAC | 1 cut(s) | 114 |
| RseI | CAYNNNNRTG | 1 cut(s) | 879 |
| SapI | GCTCTTC | 3 cut(s) | 278, 359, 519 |
| SaqAI | TTAA | 1 cut(s) | 615 |
| SatI | GCNGC | 2 cut(s) | 1176, 1185 |
| Sau3AI | GATC | 2 cut(s) | 325, 406 |
| Sau96I | GGNCC | 2 cut(s) | 850, 1154 |
| SchI | GAGTC | 4 cut(s) | 86, 103, 500, 959 |
| ScrFI | CCNGG | 2 cut(s) | 87, 854 |
| SduI | GDGCHC | 2 cut(s) | 305, 386 |
| SexAI | ACCWGGT | 1 cut(s) | 85 |
| SinI | GGWCC | 2 cut(s) | 850, 1154 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 879 |
| SmlI | CTYRAG | 1 cut(s) | 1149 |
| SmoI | CTYRAG | 1 cut(s) | 1149 |
| Sse9I | AATT | 1 cut(s) | 50 |
| SsiI | CCGC | 1 cut(s) | 1184 |
| SspMI | CTAG | 2 cut(s) | 122, 530 |
| StyD4I | CCNGG | 2 cut(s) | 85, 852 |
| StyI | CCWWGG | 3 cut(s) | 72, 96, 498 |
| TaiI | ACGT | 1 cut(s) | 825 |
| TaqI | TCGA | 2 cut(s) | 491, 509 |
| TasI | AATT | 1 cut(s) | 50 |
| TauI | GCSGC | 1 cut(s) | 1187 |
| Tru1I | TTAA | 1 cut(s) | 615 |
| Tru9I | TTAA | 1 cut(s) | 615 |
| TscAI | CASTG | 1 cut(s) | 1185 |
| TseFI | GTSAC | 2 cut(s) | 89, 138 |
| TseI | GCWGC | 1 cut(s) | 1175 |
| Tsp45I | GTSAC | 2 cut(s) | 89, 138 |
| TspGWI | ACGGA | 1 cut(s) | 863 |
| TspRI | CASTG | 1 cut(s) | 1185 |
| Tth111I | GACNNNGTC | 1 cut(s) | 136 |
| VpaK11BI | GGWCC | 2 cut(s) | 850, 1154 |
| XapI | RAATTY | 1 cut(s) | 50 |
| XspI | CTAG | 2 cut(s) | 122, 530 |