Rh3BG367200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0007773
Physical Location & Seq
Forward (+)
45617124 .. 45629894
12771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG367200.1

Sequence Viewer

Length: 909 bp
ATGGTTCATGCTCTTTTACAAACAGCTCCACTTCTCCTCGAGTGTTCTCCTCATGTCTCTTCCTGTAGAGAGAGGGATCAAAAAGAGAGAAAGAAGAAAGACAAAAAAGAGAAGAAGAACAAAGCTAAAGGGTTAGATGAAGAAGAAGAAGAGACAGAATGCAAAGAAAAATCGAGTGCTAAGGATGATTCTAAGCACACAGAGGAAGAGCTGGACAAAAATAAAGAGAAGAAGATAAAGAAGATCAAGCTCAAGGTAGATGAAGAAAGCGATGACCAGAAAGAACAGAAAAAGAAGGTTAAAGATAAGAAAGAGCAGAAAGAAGAGAAAAAGAAAGGTAAAAATAAAGTAGAGGAGGATGGGGATAATGAGGATGAAGACATTGAAGAAAAGGAAGGGAAAAAGAAGAAGAAAAAGGATAAGGAAAAATATGATGACAATGAAAAAGAGGGGAAGAAGAAAAATAAGAAAGGCAAGGGCGAAAAAAAGAAGAAAGACGGGGATAATGATGAAAAGGAAGAGAAGACGGACGAGGAGGAGAGGAAGGAGAAACACAAAAATGTAGAGAATGCGGAGAAAATGAAGGCCGAAGTAGGTTCCAGGGAGATTGAAATAGAAGATGTCAAAGAGTCGGAGGAGGAGAAGCAGAAAGATGTGGTCAAGGAAAGTAAAGAGAAGAAGGACAAAGGCGAGAAGAAACAAAAGGTTGATAAGAAAGAAAAGTGCAACGACGTCGGAAAGCTGAAACAGAAGCTAGAGAAGATTAATGGCAAAATAGAAGCACTTGTTGGAGAAAAGGCAGATATCGTGAGGCAGATAAAAGAAGCTCAAGGAACAAGTCTCATTGTTTCGGAGACGCCCTCACAGATGCAGCTGTGGCGGCATCTTGATCTTCACCATAGTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

302

Amino Acids

35.34

Weight (kDa)

8.43

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 735
AciI CCGC 2 cut(s) 572, 880
AclWI GGATC 1 cut(s) 84
AcyI GRCGYC 2 cut(s) 732, 857
AgsI TTSAA 2 cut(s) 386, 611
AjnI CCWGG 1 cut(s) 599
AjuI GAANNNNNNNTTGG 2 cut(s) 771, 803
AluBI AGCT 8 cut(s) 26, 125, 211, 250, 742, 754, 827, 874
AluI AGCT 8 cut(s) 26, 125, 211, 250, 742, 754, 827, 874
Alw26I GTCTC 4 cut(s) 61, 146, 845, 848
AlwI GGATC 1 cut(s) 84
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 1 cut(s) 585
ApeKI GCWGC 1 cut(s) 871
AseI ATTAAT 1 cut(s) 765
AsuHPI GGTGA 1 cut(s) 887
AvaI CYCGRG 1 cut(s) 38
BbsI GAAGAC 2 cut(s) 384, 530
BbvI GCAGC 1 cut(s) 883
BccI CCATC 1 cut(s) 353
BcgI CGANNNNNNTGC 2 cut(s) 715, 749
BciT130I CCWGG 1 cut(s) 601
BcoDI GTCTC 4 cut(s) 61, 146, 845, 848
BfaI CTAG 1 cut(s) 755
BfmI CTRYAG 1 cut(s) 64
BisI GCNGC 2 cut(s) 872, 881
BlsI GCNGC 2 cut(s) 873, 882
Bme1390I CCNGG 1 cut(s) 601
BmeT110I CYCGRG 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 598
BmrFI CCNGG 1 cut(s) 601
BmsI GCATC 2 cut(s) 858, 892
BpiI GAAGAC 2 cut(s) 384, 530
BplI GAGNNNNNCTC 2 cut(s) 845, 877
Bpu10I CCTNAGC 1 cut(s) 180
BpuEI CTTGAG 2 cut(s) 236, 813
BsaHI GRCGYC 2 cut(s) 732, 857
BsaJI CCNNGG 1 cut(s) 600
BseBI CCWGG 1 cut(s) 601
BseDI CCNNGG 1 cut(s) 600
BseGI GGATG 3 cut(s) 190, 364, 379
BseRI GAGGAG 7 cut(s) 26, 39, 368, 548, 551, 650, 653
BseXI GCAGC 1 cut(s) 883
BshFI GGCC 1 cut(s) 587
BsiHKCI CYCGRG 1 cut(s) 38
BsmAI GTCTC 4 cut(s) 61, 146, 845, 848
BsmBI CGTCTC 1 cut(s) 848
BsmI GAATGC 2 cut(s) 164, 574
BsnI GGCC 1 cut(s) 587
BsoBI CYCGRG 1 cut(s) 38
Bsp143I GATC 3 cut(s) 76, 243, 889
BspACI CCGC 2 cut(s) 572, 880
BspANI GGCC 1 cut(s) 587
BspLI GGNNCC 1 cut(s) 598
BspPI GGATC 1 cut(s) 84
BspQI GCTCTTC 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 600
BssMI GATC 3 cut(s) 76, 243, 889
BssNI GRCGYC 2 cut(s) 732, 857
Bst2UI CCWGG 1 cut(s) 601
Bst6I CTCTTC 5 cut(s) 64, 144, 201, 318, 513
BstACI GRCGYC 2 cut(s) 732, 857
BstDEI CTNAG 2 cut(s) 180, 192
BstF5I GGATG 3 cut(s) 190, 364, 379
BstKTI GATC 3 cut(s) 79, 246, 892
BstMAI GTCTC 4 cut(s) 61, 146, 845, 848
BstMBI GATC 3 cut(s) 76, 243, 889
BstMWI GCNNNNNNNGC 2 cut(s) 877, 880
BstNI CCWGG 1 cut(s) 601
BstSCI CCNGG 1 cut(s) 599
BstSFI CTRYAG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 883
BstV2I GAAGAC 2 cut(s) 384, 530
BsuRI GGCC 1 cut(s) 587
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 3 cut(s) 190, 364, 379
CseI GACGC 1 cut(s) 865
CviAII CATG 2 cut(s) 8, 53
CviJI RGCY 9 cut(s) 26, 125, 211, 250, 587, 742, 754, 827, 874
CviKI_1 RGCY 9 cut(s) 26, 125, 211, 250, 587, 742, 754, 827, 874
DdeI CTNAG 2 cut(s) 180, 192
DpnI GATC 3 cut(s) 78, 245, 891
DpnII GATC 3 cut(s) 76, 243, 889
Eam1104I CTCTTC 5 cut(s) 64, 144, 201, 318, 513
EarI CTCTTC 5 cut(s) 64, 144, 201, 318, 513
Eco32I GATATC 1 cut(s) 805
Eco88I CYCGRG 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 599
EcoRV GATATC 1 cut(s) 805
Esp3I CGTCTC 1 cut(s) 848
FaeI CATG 2 cut(s) 11, 56
FaiI YATR 5 cut(s) 9, 54, 432, 900, 907
FatI CATG 2 cut(s) 7, 52
Fnu4HI GCNGC 2 cut(s) 872, 881
FokI GGATG 3 cut(s) 197, 371, 386
Fsp4HI GCNGC 2 cut(s) 872, 881
FspBI CTAG 1 cut(s) 755
GluI GCNGC 2 cut(s) 872, 881
HaeIII GGCC 1 cut(s) 587
HgaI GACGC 1 cut(s) 865
Hin1I GRCGYC 2 cut(s) 732, 857
Hin1II CATG 2 cut(s) 11, 56
HinfI GANTC 2 cut(s) 188, 629
HphI GGTGA 1 cut(s) 887
Hpy188I TCNGA 3 cut(s) 634, 737, 853
Hpy188III TCNNGA 2 cut(s) 808, 887
Hpy99I CGWCG 2 cut(s) 734, 737
HpyAV CCTTC 5 cut(s) 289, 389, 538, 577, 673
HpyCH4IV ACGT 1 cut(s) 732
HpyCH4V TGCA 3 cut(s) 162, 726, 871
HpyF10VI GCNNNNNNNGC 2 cut(s) 877, 880
HpyF3I CTNAG 2 cut(s) 180, 192
HpySE526I ACGT 1 cut(s) 732
Hsp92I GRCGYC 2 cut(s) 732, 857
Hsp92II CATG 2 cut(s) 11, 56
Kzo9I GATC 3 cut(s) 76, 243, 889
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 5 cut(s) 76, 197, 290, 586, 613
Lsp1109I GCAGC 1 cut(s) 883
LweI GCATC 2 cut(s) 858, 892
MaeI CTAG 1 cut(s) 755
MaeII ACGT 1 cut(s) 732
MalI GATC 3 cut(s) 78, 245, 891
MboI GATC 3 cut(s) 76, 243, 889
MlyI GAGTC 1 cut(s) 638
MmeI TCCRAC 3 cut(s) 612, 715, 769
MseI TTAA 2 cut(s) 300, 765
MslI CAYNNNNRTG 1 cut(s) 558
MspA1I CMGCKG 1 cut(s) 874
MspR9I CCNGG 1 cut(s) 601
Mva1269I GAATGC 2 cut(s) 164, 574
MvaI CCWGG 1 cut(s) 601
MwoI GCNNNNNNNGC 2 cut(s) 877, 880
NdeII GATC 3 cut(s) 76, 243, 889
NlaIII CATG 2 cut(s) 11, 56
NlaIV GGNNCC 1 cut(s) 598
PaeR7I CTCGAG 1 cut(s) 38
PciSI GCTCTTC 1 cut(s) 201
PctI GAATGC 2 cut(s) 164, 574
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 2 cut(s) 873, 882
PleI GAGTC 1 cut(s) 637
PpsI GAGTC 1 cut(s) 637
PshBI ATTAAT 1 cut(s) 765
Psp6I CCWGG 1 cut(s) 599
PspGI CCWGG 1 cut(s) 599
PspN4I GGNNCC 1 cut(s) 598
PspXI VCTCGAGB 1 cut(s) 38
PvuII CAGCTG 1 cut(s) 874
RseI CAYNNNNRTG 1 cut(s) 558
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 2 cut(s) 300, 765
SatI GCNGC 2 cut(s) 872, 881
Sau3AI GATC 3 cut(s) 76, 243, 889
SchI GAGTC 1 cut(s) 638
ScrFI CCNGG 1 cut(s) 601
SfaNI GCATC 2 cut(s) 858, 892
SfcI CTRYAG 1 cut(s) 64
Sfr274I CTCGAG 1 cut(s) 38
SlaI CTCGAG 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 3 cut(s) 38, 251, 828
SmoI CTYRAG 3 cut(s) 38, 251, 828
SsiI CCGC 2 cut(s) 572, 880
SspMI CTAG 1 cut(s) 755
StyD4I CCNGG 1 cut(s) 599
TaiI ACGT 1 cut(s) 735
TaqI TCGA 2 cut(s) 39, 173
TauI GCSGC 1 cut(s) 883
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 2 cut(s) 300, 765
Tru9I TTAA 2 cut(s) 300, 765
TseI GCWGC 1 cut(s) 871
TspDTI ATGAA 6 cut(s) 153, 276, 390, 456, 525, 596
TspGWI ACGGA 1 cut(s) 542
VspI ATTAAT 1 cut(s) 765
XhoI CTCGAG 1 cut(s) 38
XspI CTAG 1 cut(s) 755
ZraI GACGTC 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.