Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007773

Physical Location & Seq

Genomic Coordinates Reverse (-)

2281116 .. 2282249

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022508

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGAAGACAAAGTTGAAAGGAAAGGAGAAGAAAAGGTTAACAAGGAAGAACTCCATTTAGTGATCAAGACCAAGGATGCAGAACTGGGCAACTCCAAGGAGGAAAAGACTGAGAAGGAACTTGAAAAAAAGACCAAGTCGGTGGAAAAACTGAAGCCAAAGTATAAGAAGGAGGAGGAGAAAGACACGAAAACGAACAAGGAAAAAGAGAAAGAAGAAGATGAAGAGTTGAAGAAGACAGAGAACAAAGATAAAAAGAAGGACAAGGATGAACAAGGAAAGAAGAAGAAGAAAAAGAGCAAAGATAGTGGGGGCTCAGAAGATGATGGAAAGAGGGATCAAAAAGAGAAAAAGAAGAAAGACAAAAAAGAGAAGAAGAACAAAGGTAAAGGGTTAGATGATGAAGAAGAAGAGATAGAATGCAAACATGAAAAATCGAGTGTTAAGGATGATTCTAAGCACACAGAGGAAGAGCTGGACAAAAATGAAGAGAAGAAGATAAAGAAGAATAAGCTCAATGTAGATGAAGAAAGCGATGACCAGAAAGAAGAGAAAAAGAAGGTTATAGATAAGAAAGAGCAGAAAGAAGAGAAAAAGAAGGGTAAAAATAAAGAAGAGGAGGATGGGGATAATGAGGATGAAGACAATGAAGAAAAGGAAGGGAAAAAGAAGAAGAAAAAGGATAAGGAAAAATATGATGACCATGAAAAAGAGGGGAAGAAGAAGAAAAATAAGAAAGGCAAGGACGAAAAAAAGAAGAAAGACGGGGATTATGACGAGGAGGAGAGGAAGGAGAAACACAAAAATGTAGAGGATGCGGAGAAGATGAAGGCCGAAGTTGGTTCCAGGGAGATTGAAATAGAAGATGTCAAAGAGTCGGAGGAGGAGAAGCAGAAAGATGTGGTCAAGGAAAGTAAAGAGAAGAAGGACAAAGGCGAGAAGAAACGAAAGGTTGATAAGAAAGAAAAGTGCAACGACGTCGGAAAGCTGAAACAGAAGCTAGAGAAGATTGATGGCAAAATAGAAGCACTCGTTGAAAAAAAGGCAGATATCATGAGGCAGATAAAAGAAGCTCAAGGAACAAGTCTCACTGTTTCGGAGACGCCCTCAGATGCAGCAGTGGCGGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

378

Amino Acids

44.21

Weight (kDa)

8.19

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56660 AT1G56660
fragaria_vesca	FvH4_1g28340 FvH4_1g28340 FvH4_1g28340
malus_domestica	MD14G1004000.v1.1
prunus_persica	Prupe.7G006500_v2.0.a1
pyrus_communis	pycom12g00470
rosa_chinensis	RchiOBHm_Chr3g0496751
rosa_laevigata	RLG00000022508
rosa_multiflora	Rmu_co8366833.1_g000001 Rmu_sc0000542.1_g000011 Rmu_sc0001832.1_g000015
rosa_roxburghii	Rroxscaffold_6G00388720
rosa_rugosa	Rorug03G0286300 Rorug03G0286400
rosa_samantha	Rh3AG331000 Rh3BG367000 Rh3BG367200 Rh3BG367400 Rh3BG367600 Rh3CG363700 Rh3DG367000
rosa_wichuraiana	Rw3G028990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	981
AciI	CCGC	2 cut(s)	818, 1124
AclWI	GGATC	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	173
AcyI	GRCGYC	2 cut(s)	978, 1103
AgsI	TTSAA	5 cut(s)	17, 125, 232, 857, 1037
AjnI	CCWGG	1 cut(s)	845
AluBI	AGCT	5 cut(s)	475, 514, 988, 1000, 1073
AluI	AGCT	5 cut(s)	475, 514, 988, 1000, 1073
Alw26I	GTCTC	2 cut(s)	1091, 1094
AlwI	GGATC	1 cut(s)	345
AoxI	GGCC	1 cut(s)	831
ApeKI	GCWGC	1 cut(s)	1115
BanII	GRGCYC	1 cut(s)	317
BbsI	GAAGAC	3 cut(s)	12, 242, 648
BbvI	GCAGC	1 cut(s)	1127
BccI	CCATC	3 cut(s)	320, 617, 1007
BcgI	CGANNNNNNTGC	2 cut(s)	961, 995
BciT130I	CCWGG	1 cut(s)	847
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	1091, 1094
BfaI	CTAG	1 cut(s)	1001
BisI	GCNGC	2 cut(s)	1116, 1125
BlsI	GCNGC	2 cut(s)	1117, 1126
Bme1390I	CCNGG	1 cut(s)	847
BmiI	GGNNCC	1 cut(s)	844
BmrFI	CCNGG	1 cut(s)	847
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	3 cut(s)	67, 805, 1102
BmuI	ACTGGG	1 cut(s)	95
BpiI	GAAGAC	3 cut(s)	12, 242, 648
BplI	GAGNNNNNCTC	2 cut(s)	1091, 1123
BpuEI	CTTGAG	1 cut(s)	1059
BsaHI	GRCGYC	2 cut(s)	978, 1103
BsaJI	CCNNGG	3 cut(s)	72, 96, 846
Bse1I	ACTGG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	847
BseDI	CCNNGG	3 cut(s)	72, 96, 846
BseGI	GGATG	6 cut(s)	82, 274, 454, 628, 643, 820
BseMII	CTCAG	3 cut(s)	102, 330, 1122
BseNI	ACTGG	1 cut(s)	90
BseRI	GAGGAG	7 cut(s)	188, 191, 632, 794, 797, 896, 899
BseXI	GCAGC	1 cut(s)	1127
BshFI	GGCC	1 cut(s)	833
BsmAI	GTCTC	2 cut(s)	1091, 1094
BsmBI	CGTCTC	1 cut(s)	1094
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	1 cut(s)	833
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	2 cut(s)	63, 337
BspACI	CCGC	2 cut(s)	818, 1124
BspANI	GGCC	1 cut(s)	833
BspCNI	CTCAG	3 cut(s)	103, 329, 1121
BspHI	TCATGA	1 cut(s)	1053
BspLI	GGNNCC	1 cut(s)	844
BspPI	GGATC	1 cut(s)	345
BspQI	GCTCTTC	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	3 cut(s)	72, 96, 846
BssMI	GATC	2 cut(s)	63, 337
BssNI	GRCGYC	2 cut(s)	978, 1103
BssT1I	CCWWGG	2 cut(s)	72, 96
Bst2UI	CCWGG	1 cut(s)	847
Bst4CI	ACNGT	1 cut(s)	1093
Bst6I	CTCTTC	7 cut(s)	219, 405, 465, 483, 543, 582, 609
BstACI	GRCGYC	2 cut(s)	978, 1103
BstDEI	CTNAG	4 cut(s)	111, 316, 456, 1108
BstF5I	GGATG	6 cut(s)	82, 274, 454, 628, 643, 820
BstKTI	GATC	2 cut(s)	66, 340
BstMAI	GTCTC	2 cut(s)	1091, 1094
BstMBI	GATC	2 cut(s)	63, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	1121, 1124
BstNI	CCWGG	1 cut(s)	847
BstSCI	CCNGG	1 cut(s)	845
BstV1I	GCAGC	1 cut(s)	1127
BstV2I	GAAGAC	3 cut(s)	12, 242, 648
BstXI	CCANNNNNNTGG	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	833
BtgZI	GCGATG	1 cut(s)	549
BtsCI	GGATG	6 cut(s)	82, 274, 454, 628, 643, 820
BtsI	GCAGTG	1 cut(s)	1125
BtsIMutI	CAGTG	2 cut(s)	1089, 1125
CciI	TCATGA	1 cut(s)	1053
CseI	GACGC	1 cut(s)	1111
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	3 cut(s)	428, 704, 1054
CviJI	RGCY	8 cut(s)	157, 315, 475, 514, 833, 988, 1000, 1073
CviKI_1	RGCY	8 cut(s)	157, 315, 475, 514, 833, 988, 1000, 1073
DdeI	CTNAG	4 cut(s)	111, 316, 456, 1108
DpnI	GATC	2 cut(s)	65, 339
DpnII	GATC	2 cut(s)	63, 337
Eam1104I	CTCTTC	7 cut(s)	219, 405, 465, 483, 543, 582, 609
EarI	CTCTTC	7 cut(s)	219, 405, 465, 483, 543, 582, 609
Eco130I	CCWWGG	2 cut(s)	72, 96
Eco24I	GRGCYC	1 cut(s)	317
Eco32I	GATATC	1 cut(s)	1051
Eco57I	CTGAAG	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	845
EcoRV	GATATC	1 cut(s)	1051
EcoT14I	CCWWGG	2 cut(s)	72, 96
EcoT38I	GRGCYC	1 cut(s)	317
ErhI	CCWWGG	2 cut(s)	72, 96
Esp3I	CGTCTC	1 cut(s)	1094
FaeI	CATG	3 cut(s)	431, 707, 1057
FaiI	YATR	7 cut(s)	165, 429, 566, 696, 705, 774, 1055
FatI	CATG	3 cut(s)	427, 703, 1053
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	1116, 1125
FokI	GGATG	6 cut(s)	89, 281, 461, 635, 650, 827
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	2 cut(s)	1116, 1125
FspBI	CTAG	1 cut(s)	1001
GluI	GCNGC	2 cut(s)	1116, 1125
HaeIII	GGCC	1 cut(s)	833
HgaI	GACGC	1 cut(s)	1111
Hin1I	GRCGYC	2 cut(s)	978, 1103
Hin1II	CATG	3 cut(s)	431, 707, 1057
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	2 cut(s)	452, 875
HpaI	GTTAAC	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	5 cut(s)	319, 880, 983, 1099, 1111
Hpy188III	TCNNGA	3 cut(s)	67, 1054, 1131
Hpy8I	GTNNAC	1 cut(s)	40
Hpy99I	CGWCG	2 cut(s)	980, 983
HpyAV	CCTTC	9 cut(s)	109, 163, 253, 553, 592, 653, 784, 823, 919
HpyCH4III	ACNGT	1 cut(s)	1093
HpyCH4IV	ACGT	1 cut(s)	978
HpyCH4V	TGCA	4 cut(s)	80, 423, 972, 1115
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1121, 1124
HpyF3I	CTNAG	4 cut(s)	111, 316, 456, 1108
HpySE526I	ACGT	1 cut(s)	978
Hsp92I	GRCGYC	2 cut(s)	978, 1103
Hsp92II	CATG	3 cut(s)	431, 707, 1057
Ksp22I	TGATCA	1 cut(s)	63
KspAI	GTTAAC	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	63, 337
LguI	GCTCTTC	1 cut(s)	465
LpnPI	CCDG	5 cut(s)	71, 461, 554, 832, 859
Lsp1109I	GCAGC	1 cut(s)	1127
LweI	GCATC	3 cut(s)	67, 805, 1102
MaeI	CTAG	1 cut(s)	1001
MaeII	ACGT	1 cut(s)	978
MalI	GATC	2 cut(s)	65, 339
MboI	GATC	2 cut(s)	63, 337
MhlI	GDGCHC	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	884
MmeI	TCCRAC	2 cut(s)	858, 961
MseI	TTAA	2 cut(s)	39, 444
MslI	CAYNNNNRTG	1 cut(s)	804
MspR9I	CCNGG	1 cut(s)	847
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	847
MwoI	GCNNNNNNNGC	2 cut(s)	1121, 1124
NdeII	GATC	2 cut(s)	63, 337
NlaIII	CATG	3 cut(s)	431, 707, 1057
NlaIV	GGNNCC	1 cut(s)	844
PagI	TCATGA	1 cut(s)	1053
PciSI	GCTCTTC	1 cut(s)	465
PctI	GAATGC	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	452
PflFI	GACNNNGTC	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	1117, 1126
PleI	GAGTC	1 cut(s)	883
PpsI	GAGTC	1 cut(s)	883
Psp6I	CCWGG	1 cut(s)	845
PspGI	CCWGG	1 cut(s)	845
PspN4I	GGNNCC	1 cut(s)	844
PsyI	GACNNNGTC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	804
SapI	GCTCTTC	1 cut(s)	465
SaqAI	TTAA	2 cut(s)	39, 444
SatI	GCNGC	2 cut(s)	1116, 1125
Sau3AI	GATC	2 cut(s)	63, 337
SchI	GAGTC	1 cut(s)	884
ScrFI	CCNGG	1 cut(s)	847
SduI	GDGCHC	1 cut(s)	317
SfaNI	GCATC	3 cut(s)	67, 805, 1102
SmiMI	CAYNNNNRTG	1 cut(s)	804
SmlI	CTYRAG	1 cut(s)	1074
SmoI	CTYRAG	1 cut(s)	1074
SsiI	CCGC	2 cut(s)	818, 1124
SspMI	CTAG	1 cut(s)	1001
StyD4I	CCNGG	1 cut(s)	845
StyI	CCWWGG	2 cut(s)	72, 96
TaaI	ACNGT	1 cut(s)	1093
TaiI	ACGT	1 cut(s)	981
TaqI	TCGA	1 cut(s)	437
TauI	GCSGC	1 cut(s)	1127
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	2 cut(s)	39, 444
Tru9I	TTAA	2 cut(s)	39, 444
TscAI	CASTG	2 cut(s)	1096, 1125
TseI	GCWGC	1 cut(s)	1115
TspRI	CASTG	2 cut(s)	1096, 1125
Tth111I	GACNNNGTC	1 cut(s)	136
XspI	CTAG	1 cut(s)	1001
ZraI	GACGTC	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.