Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000542.1

Orthogroup ID

OG0007773

Physical Location & Seq

Genomic Coordinates Reverse (-)

60409 .. 61560

Gene Structure 1152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000542.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

atggaagacaaagttgaatggaaaggagaagaaaaggttaacaaggaagaactccatttagtgatcaagaccaaggatgcagaactaggcggtgactccaaggaggaaaagactgagaaggaacttgaaataaagaccaagtcggtggaaaaactgaagccaaagtataaggaggaggaggagaaagacacgaaaacgaacaaggaaaaagagaaagaagaagatgaagagttgaagaagacagagaacaaagataaaaagaaggacaaggataaacaaggaaagaagaagaagaaaaagagcaaagatactgggggctcagaagatgatggagagagggatcaaaaagagaaaaagaagaaagacaaacaagagaagaagaacaaaggtaaagggttagatgaagaagaagaagagatagaatgcaaagatgaaaaatcgagtgttaaggatgattctaagcacacagaggaagagctggacaaaaatgaagagaagaagaataagctcaaggtagatgaagaaagcaatgaccagaaagaagagaaaaagaaggttaaagataagaaagagcagaaagaagagaaaaagaagggtaaaaataaagaagaggaggatcgggataatgaggatgaggacaatgaagaaaaggaagggaaaaagaagaagaagaagaaggataaggaaaaatatgatgacaatgaaaaagaggggaagaagaagaaagataagaaaggcaaggacaaaaaaaagaagaaagacggggagtttgatgaaaacgaagagaagatggacggggaggagaggaaggagaaacacaaaaatttagaggatgcggagaagatgaaggccgaagttggttccagggagattgaaatagaagatgtcaaagagtcgtcggaggagaagcagaaagatgtggtcaaggaaagtaaagagaagaaggacaaaggcgagaagaaacgaaaggttgataagaaagaaaagtgcaacgacgtcggaaatctgaaacagaagctagagaagattaatggcaaaatagaagcacttgttgaaaaaaaggcagatatcatgaggcagataaaagaagctcaaggaacaagtctcattgtttcggagacgccctcagatgcagcattggcggcatcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

383

Amino Acids

44.93

Weight (kDa)

6.58

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56660 AT1G56660
fragaria_vesca	FvH4_1g28340 FvH4_1g28340 FvH4_1g28340
malus_domestica	MD14G1004000.v1.1
prunus_persica	Prupe.7G006500_v2.0.a1
pyrus_communis	pycom12g00470
rosa_chinensis	RchiOBHm_Chr3g0496751
rosa_laevigata	RLG00000022508
rosa_multiflora	Rmu_co8366833.1_g000001 Rmu_sc0000542.1_g000011 Rmu_sc0001832.1_g000015
rosa_roxburghii	Rroxscaffold_6G00388720
rosa_rugosa	Rorug03G0286300 Rorug03G0286400
rosa_samantha	Rh3AG331000 Rh3BG367000 Rh3BG367200 Rh3BG367400 Rh3BG367600 Rh3CG363700 Rh3DG367000
rosa_wichuraiana	Rw3G028990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	999
AciI	CCGC	3 cut(s)	90, 836, 1142
AclWI	GGATC	2 cut(s)	348, 624
AcsI	RAATTY	1 cut(s)	823
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	2 cut(s)	996, 1121
AgsI	TTSAA	5 cut(s)	17, 128, 235, 875, 1055
AjnI	CCWGG	1 cut(s)	863
AluBI	AGCT	4 cut(s)	478, 508, 1018, 1091
AluI	AGCT	4 cut(s)	478, 508, 1018, 1091
Alw26I	GTCTC	2 cut(s)	1109, 1112
AlwI	GGATC	2 cut(s)	348, 624
AoxI	GGCC	1 cut(s)	849
ApeKI	GCWGC	1 cut(s)	1133
ApoI	RAATTY	1 cut(s)	823
ArsI	GACNNNNNNTTYG	2 cut(s)	752, 784
AseI	ATTAAT	1 cut(s)	1029
AsuHPI	GGTGA	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	320
BbsI	GAAGAC	2 cut(s)	12, 245
BbvI	GCAGC	1 cut(s)	1145
BccI	CCATC	2 cut(s)	323, 784
BcgI	CGANNNNNNTGC	2 cut(s)	979, 1013
BciT130I	CCWGG	1 cut(s)	865
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	1109, 1112
BfaI	CTAG	2 cut(s)	86, 1019
BisI	GCNGC	2 cut(s)	1134, 1143
BlsI	GCNGC	2 cut(s)	1135, 1144
Bme1390I	CCNGG	1 cut(s)	865
BmiI	GGNNCC	1 cut(s)	862
BmrFI	CCNGG	1 cut(s)	865
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	3 cut(s)	67, 823, 1120
BmuI	ACTGGG	1 cut(s)	321
BpiI	GAAGAC	2 cut(s)	12, 245
BplI	GAGNNNNNCTC	2 cut(s)	1109, 1141
BpuEI	CTTGAG	2 cut(s)	494, 1077
BsaHI	GRCGYC	2 cut(s)	996, 1121
BsaJI	CCNNGG	3 cut(s)	72, 99, 864
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	535
BseBI	CCWGG	1 cut(s)	865
BseDI	CCNNGG	3 cut(s)	72, 99, 864
BseGI	GGATG	4 cut(s)	82, 457, 637, 838
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	3 cut(s)	105, 333, 1140
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	6 cut(s)	188, 191, 194, 626, 815, 917
BseXI	GCAGC	1 cut(s)	1145
BshFI	GGCC	1 cut(s)	851
BsmAI	GTCTC	2 cut(s)	1109, 1112
BsmBI	CGTCTC	1 cut(s)	1112
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	1 cut(s)	851
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	3 cut(s)	63, 340, 616
BspACI	CCGC	3 cut(s)	90, 836, 1142
BspANI	GGCC	1 cut(s)	851
BspCNI	CTCAG	3 cut(s)	106, 332, 1139
BspHI	TCATGA	1 cut(s)	1071
BspLI	GGNNCC	1 cut(s)	862
BspPI	GGATC	2 cut(s)	348, 624
BspQI	GCTCTTC	1 cut(s)	468
BsrDI	GCAATG	1 cut(s)	535
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	3 cut(s)	72, 99, 864
BssMI	GATC	3 cut(s)	63, 340, 616
BssNI	GRCGYC	2 cut(s)	996, 1121
BssT1I	CCWWGG	2 cut(s)	72, 99
Bst2UI	CCWGG	1 cut(s)	865
Bst6I	CTCTTC	8 cut(s)	222, 408, 468, 486, 537, 576, 603, 777
BstACI	GRCGYC	2 cut(s)	996, 1121
BstDEI	CTNAG	4 cut(s)	114, 319, 459, 1126
BstF5I	GGATG	4 cut(s)	82, 457, 637, 838
BstKTI	GATC	3 cut(s)	66, 343, 619
BstMAI	GTCTC	2 cut(s)	1109, 1112
BstMBI	GATC	3 cut(s)	63, 340, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	1139, 1142
BstNI	CCWGG	1 cut(s)	865
BstSCI	CCNGG	1 cut(s)	863
BstV1I	GCAGC	1 cut(s)	1145
BstV2I	GAAGAC	2 cut(s)	12, 245
BstXI	CCANNNNNNTGG	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	851
BtsCI	GGATG	4 cut(s)	82, 457, 637, 838
CciI	TCATGA	1 cut(s)	1071
CseI	GACGC	1 cut(s)	1129
CviAII	CATG	1 cut(s)	1072
CviJI	RGCY	7 cut(s)	160, 318, 478, 508, 851, 1018, 1091
CviKI_1	RGCY	7 cut(s)	160, 318, 478, 508, 851, 1018, 1091
DdeI	CTNAG	4 cut(s)	114, 319, 459, 1126
DpnI	GATC	3 cut(s)	65, 342, 618
DpnII	GATC	3 cut(s)	63, 340, 616
Eam1104I	CTCTTC	8 cut(s)	222, 408, 468, 486, 537, 576, 603, 777
EarI	CTCTTC	8 cut(s)	222, 408, 468, 486, 537, 576, 603, 777
Eco130I	CCWWGG	2 cut(s)	72, 99
Eco24I	GRGCYC	1 cut(s)	320
Eco32I	GATATC	1 cut(s)	1069
Eco57I	CTGAAG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	863
EcoRV	GATATC	1 cut(s)	1069
EcoT14I	CCWWGG	2 cut(s)	72, 99
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	2 cut(s)	72, 99
Esp3I	CGTCTC	1 cut(s)	1112
FaeI	CATG	1 cut(s)	1075
FaiI	YATR	3 cut(s)	168, 693, 1073
FatI	CATG	1 cut(s)	1071
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	1134, 1143
FokI	GGATG	4 cut(s)	89, 464, 644, 845
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	2 cut(s)	1134, 1143
FspBI	CTAG	2 cut(s)	86, 1019
GluI	GCNGC	2 cut(s)	1134, 1143
HaeIII	GGCC	1 cut(s)	851
HgaI	GACGC	1 cut(s)	1129
Hin1I	GRCGYC	2 cut(s)	996, 1121
Hin1II	CATG	1 cut(s)	1075
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	3 cut(s)	95, 455, 893
HpaI	GTTAAC	1 cut(s)	40
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	6 cut(s)	322, 901, 1001, 1008, 1117, 1129
Hpy188III	TCNNGA	4 cut(s)	67, 620, 1072, 1149
Hpy8I	GTNNAC	1 cut(s)	40
Hpy99I	CGWCG	3 cut(s)	901, 998, 1001
HpyAV	CCTTC	9 cut(s)	112, 256, 547, 586, 647, 670, 802, 841, 937
HpyCH4IV	ACGT	1 cut(s)	996
HpyCH4V	TGCA	4 cut(s)	80, 426, 990, 1133
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1139, 1142
HpyF3I	CTNAG	4 cut(s)	114, 319, 459, 1126
HpySE526I	ACGT	1 cut(s)	996
Hsp92I	GRCGYC	2 cut(s)	996, 1121
Hsp92II	CATG	1 cut(s)	1075
Ksp22I	TGATCA	1 cut(s)	63
KspAI	GTTAAC	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	63, 340, 616
LguI	GCTCTTC	1 cut(s)	468
LpnPI	CCDG	5 cut(s)	297, 464, 548, 850, 877
Lsp1109I	GCAGC	1 cut(s)	1145
LweI	GCATC	3 cut(s)	67, 823, 1120
MaeI	CTAG	2 cut(s)	86, 1019
MaeII	ACGT	1 cut(s)	996
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	3 cut(s)	65, 342, 618
MboI	GATC	3 cut(s)	63, 340, 616
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	1 cut(s)	823
MlyI	GAGTC	2 cut(s)	89, 902
MmeI	TCCRAC	2 cut(s)	879, 979
MseI	TTAA	4 cut(s)	39, 447, 558, 1029
MspR9I	CCNGG	1 cut(s)	865
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	1 cut(s)	865
MwoI	GCNNNNNNNGC	2 cut(s)	1139, 1142
NdeII	GATC	3 cut(s)	63, 340, 616
NlaIII	CATG	1 cut(s)	1075
NlaIV	GGNNCC	1 cut(s)	862
NmuCI	GTSAC	1 cut(s)	92
PagI	TCATGA	1 cut(s)	1071
PciSI	GCTCTTC	1 cut(s)	468
PctI	GAATGC	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	455
PflFI	GACNNNGTC	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	1135, 1144
PleI	GAGTC	2 cut(s)	89, 901
PpsI	GAGTC	2 cut(s)	89, 901
PshBI	ATTAAT	1 cut(s)	1029
Psp6I	CCWGG	1 cut(s)	863
PspGI	CCWGG	1 cut(s)	863
PspN4I	GGNNCC	1 cut(s)	862
PsyI	GACNNNGTC	1 cut(s)	139
SapI	GCTCTTC	1 cut(s)	468
SaqAI	TTAA	4 cut(s)	39, 447, 558, 1029
SatI	GCNGC	2 cut(s)	1134, 1143
Sau3AI	GATC	3 cut(s)	63, 340, 616
SchI	GAGTC	2 cut(s)	89, 902
ScrFI	CCNGG	1 cut(s)	865
SduI	GDGCHC	1 cut(s)	320
SfaNI	GCATC	3 cut(s)	67, 823, 1120
SmlI	CTYRAG	2 cut(s)	509, 1092
SmoI	CTYRAG	2 cut(s)	509, 1092
Sse9I	AATT	1 cut(s)	823
SsiI	CCGC	3 cut(s)	90, 836, 1142
SspMI	CTAG	2 cut(s)	86, 1019
StyD4I	CCNGG	1 cut(s)	863
StyI	CCWWGG	2 cut(s)	72, 99
TaiI	ACGT	1 cut(s)	999
TaqI	TCGA	1 cut(s)	440
TasI	AATT	1 cut(s)	823
TauI	GCSGC	1 cut(s)	1145
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	4 cut(s)	39, 447, 558, 1029
Tru9I	TTAA	4 cut(s)	39, 447, 558, 1029
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	1133
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	9 cut(s)	240, 417, 447, 504, 534, 657, 717, 789, 860
Tth111I	GACNNNGTC	1 cut(s)	139
VspI	ATTAAT	1 cut(s)	1029
XapI	RAATTY	1 cut(s)	823
XspI	CTAG	2 cut(s)	86, 1019
ZraI	GACGTC	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.