Rh3BG367600
ERF Family

Belongs to the calycin superfamily. Lipocalin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0007773
Physical Location & Seq
Forward (+)
45767216 .. 45779740
12525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG367600.1

Sequence Viewer

Length: 888 bp
ATGGTTCATGCTCTTTTACAAATAGCTCCACTTCTCCTCGAGTGTTCTCCTCATGTCTCTTCCTGTAGGGGAAAGCCTGGGAAAATAGTGATGAAGTGCTGTGCAGAGCAATCTATGAGCAACAAGCCAGTGACCAAACATGTATTATCTGGGTTTGCCGCATCTTTAGTACTTCTCTCTCAAATAAACCAGGCTGTTGCATCAGAAGTTTACTTTCAAAGAAATACTTATGAGCTTGCAAATGCTTCTGAGAAGACAGTGACTCTTCCTCTTGATAAGGATTCTGTTGAAGGAGCTGATGTTGGCCAAACAATTTTGACCCCATTAGATATTCTGGTAGGTGGTATGAAGTTGCCTCACTTAAACGTGGATTTGCTGGGCAAGGTCAGGAAGACTGTCATTGCACCCAGGGTGTATATATATACCTTTGATAGTGAGAAGAGGGCCATCCAGGTTGATACCTTCTGTGTTCATGGGTCTCCTGACGGTTATATAACTGGCATAAGGGGAAACGTTCAATGCCTTTCAGAGAAAGATTTGGAAAAGAATGAGTCAGATCTAGAAATGCAGGAGATGATCAAAGAGAAGTGTTTCCTCCGTTTTCCAACATTGCCATTTATCCGTAAGTTGCCGTATGATGTGATCGCAACTGATTATGACAATTTTGCTCTTGTTTCAGGAGCAAAAGATACAGGTTTCATACAGATCTACTCCAGAACACCAACTCCTGGTCCTGAATTCATAGAGAAGTACAAATCTTACTTGGCCAACTTTGGATATGACCCAACCAAAATCAAGGACACCCCACAAGATTGTGAAGTGATGTCGGATAGTCGGCTAGCTGCAATGATCTCAATGTCCGGAATGCAAAAAAAATTTAACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0001817 GO:0001818 GO:0001952 GO:0001953 GO:0002682 GO:0002683 GO:0002685 GO:0002686 GO:0003006 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005975 GO:0005996 GO:0006006 GO:0006629 GO:0006950 GO:0006979 GO:0007162 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007568 GO:0008150 GO:0008152 GO:0008285 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010431 GO:0010565 GO:0010605 GO:0010640 GO:0010642 GO:0010646 GO:0010648 GO:0010810 GO:0010812 GO:0012505 GO:0014012 GO:0015485 GO:0016020 GO:0016043 GO:0019216 GO:0019217 GO:0019222 GO:0019318 GO:0021700 GO:0022008 GO:0022414 GO:0022626 GO:0023051 GO:0023057 GO:0030030 GO:0030154 GO:0030155 GO:0030182 GO:0030334 GO:0030336 GO:0030425 GO:0031099 GO:0031102 GO:0031103 GO:0031175 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031976 GO:0031977 GO:0031984 GO:0032101 GO:0032102 GO:0032386 GO:0032387 GO:0032501 GO:0032502 GO:0032504 GO:0032642 GO:0032682 GO:0032879 GO:0032880 GO:0032934 GO:0032991 GO:0033157 GO:0033554 GO:0033993 GO:0034357 GO:0034442 GO:0034443 GO:0036094 GO:0036477 GO:0040007 GO:0040012 GO:0040013 GO:0042060 GO:0042127 GO:0042221 GO:0042246 GO:0042306 GO:0042308 GO:0042493 GO:0042651 GO:0042995 GO:0043005 GO:0043025 GO:0043178 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044238 GO:0044281 GO:0044297 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044463 GO:0044464 GO:0045833 GO:0045922 GO:0046320 GO:0046322 GO:0046822 GO:0046823 GO:0048316 GO:0048468 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048608 GO:0048609 GO:0048660 GO:0048662 GO:0048666 GO:0048678 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050727 GO:0050728 GO:0050746 GO:0050748 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051223 GO:0051224 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051270 GO:0051271 GO:0051716 GO:0051893 GO:0051895 GO:0055035 GO:0060255 GO:0060322 GO:0060341 GO:0060587 GO:0060588 GO:0061458 GO:0061564 GO:0062012 GO:0062014 GO:0065007 GO:0070201 GO:0071637 GO:0071638 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090087 GO:0090109 GO:0090317 GO:0097159 GO:0097305 GO:0097447 GO:0097458 GO:0120025 GO:0120036 GO:0120038 GO:1900015 GO:1900016 GO:1900180 GO:1900181 GO:1901562 GO:1901700 GO:1901888 GO:1901889 GO:1903391 GO:1903392 GO:1903827 GO:1903828 GO:1904589 GO:1904590 GO:1904950 GO:1990904 GO:2000097 GO:2000098 GO:2000145 GO:2000146 GO:2000401 GO:2000402 GO:2000404 GO:2000405
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipocalin_2

Protein Analysis

295

Amino Acids

32.78

Weight (kDa)

6.94

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 728
AccIII TCCGGA 1 cut(s) 860
AciI CCGC 1 cut(s) 159
AclI AACGTT 1 cut(s) 513
AcoI YGGCCR 2 cut(s) 304, 765
AcsI RAATTY 2 cut(s) 737, 875
AfaI GTAC 2 cut(s) 171, 752
AfiI CCNNNNNNNGG 1 cut(s) 728
AflIII ACRYGT 1 cut(s) 139
AgsI TTSAA 3 cut(s) 218, 290, 518
AjnI CCWGG 5 cut(s) 76, 189, 407, 450, 727
AloI GAACNNNNNNTCC 2 cut(s) 709, 741
AluBI AGCT 4 cut(s) 26, 235, 296, 842
AluI AGCT 4 cut(s) 26, 235, 296, 842
Alw26I GTCTC 2 cut(s) 61, 483
Ama87I CYCGRG 1 cut(s) 38
Aor13HI TCCGGA 1 cut(s) 860
AoxI GGCC 3 cut(s) 304, 444, 765
ApeKI GCWGC 1 cut(s) 842
ApoI RAATTY 2 cut(s) 737, 875
Asp700I GAANNNNTTC 1 cut(s) 590
AspS9I GGNCC 2 cut(s) 444, 731
AsuNHI GCTAGC 1 cut(s) 838
AvaI CYCGRG 1 cut(s) 38
AvaII GGWCC 1 cut(s) 731
BalI TGGCCA 2 cut(s) 306, 767
BbsI GAAGAC 2 cut(s) 260, 398
BbvI GCAGC 1 cut(s) 829
BccI CCATC 1 cut(s) 455
BceAI ACGGC 1 cut(s) 616
BciT130I CCWGG 5 cut(s) 78, 191, 409, 452, 729
BclI TGATCA 1 cut(s) 576
BcoDI GTCTC 2 cut(s) 61, 483
BfaI CTAG 2 cut(s) 560, 839
BfmI CTRYAG 1 cut(s) 64
BglII AGATCT 2 cut(s) 556, 705
BisI GCNGC 2 cut(s) 159, 843
BlsI GCNGC 2 cut(s) 160, 844
BmcAI AGTACT 1 cut(s) 171
Bme1390I CCNGG 5 cut(s) 78, 191, 409, 452, 729
Bme18I GGWCC 1 cut(s) 731
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 2 cut(s) 444, 731
BmrFI CCNGG 5 cut(s) 78, 191, 409, 452, 729
BmsI GCATC 2 cut(s) 170, 209
BmtI GCTAGC 1 cut(s) 842
BpiI GAAGAC 2 cut(s) 260, 398
BpmI CTGGAG 1 cut(s) 697
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 3 cut(s) 77, 407, 408
BsaWI WCCGGW 1 cut(s) 860
BsaXI ACNNNNNCTCC 4 cut(s) 285, 315, 709, 739
Bsc4I CCNNNNNNNGG 1 cut(s) 728
Bse1I ACTGG 2 cut(s) 128, 502
Bse3DI GCAATG 3 cut(s) 399, 608, 852
BseAI TCCGGA 1 cut(s) 860
BseBI CCWGG 5 cut(s) 78, 191, 409, 452, 729
BseDI CCNNGG 3 cut(s) 77, 407, 408
BseGI GGATG 1 cut(s) 447
BseLI CCNNNNNNNGG 1 cut(s) 728
BseMI GCAATG 3 cut(s) 399, 608, 852
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 2 cut(s) 128, 502
BseRI GAGGAG 2 cut(s) 26, 39
BseXI GCAGC 1 cut(s) 829
BseYI CCCAGC 1 cut(s) 376
BsgI GTGCAG 1 cut(s) 123
BshFI GGCC 3 cut(s) 306, 446, 767
BsiHKCI CYCGRG 1 cut(s) 38
BsiSI CCGG 1 cut(s) 861
BslI CCNNNNNNNGG 1 cut(s) 728
BsmAI GTCTC 2 cut(s) 61, 483
BsmI GAATGC 1 cut(s) 870
BsnI GGCC 3 cut(s) 306, 446, 767
Bso31I GGTCTC 1 cut(s) 483
BsoBI CYCGRG 1 cut(s) 38
Bsp13I TCCGGA 1 cut(s) 860
Bsp143I GATC 5 cut(s) 556, 576, 642, 705, 849
BspACI CCGC 1 cut(s) 159
BspANI GGCC 3 cut(s) 306, 446, 767
BspCNI CTCAG 1 cut(s) 241
BspEI TCCGGA 1 cut(s) 860
BspOI GCTAGC 1 cut(s) 842
BspTNI GGTCTC 1 cut(s) 483
BsrDI GCAATG 3 cut(s) 399, 608, 852
BsrI ACTGG 2 cut(s) 128, 502
BssECI CCNNGG 3 cut(s) 77, 407, 408
BssMI GATC 5 cut(s) 556, 576, 642, 705, 849
Bst2UI CCWGG 5 cut(s) 78, 191, 409, 452, 729
Bst4CI ACNGT 3 cut(s) 259, 397, 488
Bst6I CTCTTC 3 cut(s) 64, 270, 434
BstC8I GCNNGC 2 cut(s) 237, 840
BstDEI CTNAG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 447
BstKTI GATC 5 cut(s) 559, 579, 645, 708, 852
BstMAI GTCTC 2 cut(s) 61, 483
BstMBI GATC 5 cut(s) 556, 576, 642, 705, 849
BstNI CCWGG 5 cut(s) 78, 191, 409, 452, 729
BstNSI RCATGY 1 cut(s) 143
BstSCI CCNGG 5 cut(s) 76, 189, 407, 450, 727
BstSFI CTRYAG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 829
BstV2I GAAGAC 2 cut(s) 260, 398
BstX2I RGATCY 2 cut(s) 556, 705
BstYI RGATCY 2 cut(s) 556, 705
BsuRI GGCC 3 cut(s) 306, 446, 767
BtsCI GGATG 1 cut(s) 447
BtsIMutI CAGTG 2 cut(s) 135, 264
Cac8I GCNNGC 2 cut(s) 237, 840
Cfr13I GGNCC 2 cut(s) 444, 731
Csp6I GTAC 2 cut(s) 170, 751
CviAII CATG 4 cut(s) 8, 53, 140, 473
CviQI GTAC 2 cut(s) 170, 751
DdeI CTNAG 1 cut(s) 249
DpnI GATC 5 cut(s) 558, 578, 644, 707, 851
DpnII GATC 5 cut(s) 556, 576, 642, 705, 849
EaeI YGGCCR 2 cut(s) 304, 765
Eam1104I CTCTTC 3 cut(s) 64, 270, 434
EarI CTCTTC 3 cut(s) 64, 270, 434
Eco31I GGTCTC 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 731
Eco88I CYCGRG 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 737
EcoRII CCWGG 5 cut(s) 76, 189, 407, 450, 727
FaeI CATG 4 cut(s) 11, 56, 143, 476
FalI AAGNNNNNCTT 2 cut(s) 211, 243
FatI CATG 4 cut(s) 7, 52, 139, 472
FbaI TGATCA 1 cut(s) 576
Fnu4HI GCNGC 2 cut(s) 159, 843
FokI GGATG 1 cut(s) 434
Fsp4HI GCNGC 2 cut(s) 159, 843
FspBI CTAG 2 cut(s) 560, 839
GluI GCNGC 2 cut(s) 159, 843
GsaI CCCAGC 1 cut(s) 380
GsuI CTGGAG 1 cut(s) 697
HaeIII GGCC 3 cut(s) 306, 446, 767
HapII CCGG 1 cut(s) 861
Hin1II CATG 4 cut(s) 11, 56, 143, 476
HinfI GANTC 3 cut(s) 262, 281, 551
HpaII CCGG 1 cut(s) 861
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 5 cut(s) 205, 250, 529, 556, 829
Hpy188III TCNNGA 8 cut(s) 272, 388, 482, 560, 678, 714, 734, 861
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 2 cut(s) 284, 472
HpyCH4III ACNGT 3 cut(s) 259, 397, 488
HpyCH4IV ACGT 2 cut(s) 366, 513
HpyCH4V TGCA 7 cut(s) 104, 200, 239, 404, 568, 845, 868
HpyF3I CTNAG 1 cut(s) 249
HpySE526I ACGT 2 cut(s) 366, 513
Hsp92II CATG 4 cut(s) 11, 56, 143, 476
Kpn2I TCCGGA 1 cut(s) 860
Ksp22I TGATCA 1 cut(s) 576
Kzo9I GATC 5 cut(s) 556, 576, 642, 705, 849
LmnI GCTCC 3 cut(s) 31, 293, 680
Lsp1109I GCAGC 1 cut(s) 829
LweI GCATC 2 cut(s) 170, 209
MaeI CTAG 2 cut(s) 560, 839
MaeII ACGT 2 cut(s) 366, 513
MaeIII GTNAC 2 cut(s) 130, 259
MalI GATC 5 cut(s) 558, 578, 644, 707, 851
MboI GATC 5 cut(s) 556, 576, 642, 705, 849
MboII GAAGA 5 cut(s) 51, 257, 265, 403, 451
MflI RGATCY 2 cut(s) 556, 705
MlsI TGGCCA 2 cut(s) 306, 767
MluCI AATT 4 cut(s) 312, 661, 737, 875
MluNI TGGCCA 2 cut(s) 306, 767
MlyI GAGTC 2 cut(s) 256, 560
MmeI TCCRAC 2 cut(s) 629, 807
MnlI CCTC 6 cut(s) 47, 60, 279, 366, 435, 605
Mox20I TGGCCA 2 cut(s) 306, 767
MroI TCCGGA 1 cut(s) 860
MroXI GAANNNNTTC 1 cut(s) 590
MscI TGGCCA 2 cut(s) 306, 767
MseI TTAA 2 cut(s) 362, 879
Msp20I TGGCCA 2 cut(s) 306, 767
MspI CCGG 1 cut(s) 861
MspR9I CCNGG 5 cut(s) 78, 191, 409, 452, 729
Mva1269I GAATGC 1 cut(s) 870
MvaI CCWGG 5 cut(s) 78, 191, 409, 452, 729
NdeII GATC 5 cut(s) 556, 576, 642, 705, 849
NheI GCTAGC 1 cut(s) 838
NlaIII CATG 4 cut(s) 11, 56, 143, 476
NmuCI GTSAC 2 cut(s) 130, 259
NspI RCATGY 1 cut(s) 143
PaeR7I CTCGAG 1 cut(s) 38
PasI CCCWGGG 1 cut(s) 408
PciI ACATGT 1 cut(s) 139
PctI GAATGC 1 cut(s) 870
PdmI GAANNNNTTC 1 cut(s) 590
PfeI GAWTC 1 cut(s) 281
PflMI CCANNNNNTGG 1 cut(s) 728
PkrI GCNGC 2 cut(s) 160, 844
PleI GAGTC 2 cut(s) 256, 559
PpsI GAGTC 2 cut(s) 256, 559
PscI ACATGT 1 cut(s) 139
Psp1406I AACGTT 1 cut(s) 513
Psp6I CCWGG 5 cut(s) 76, 189, 407, 450, 727
PspFI CCCAGC 1 cut(s) 376
PspGI CCWGG 5 cut(s) 76, 189, 407, 450, 727
PspPI GGNCC 2 cut(s) 444, 731
PspXI VCTCGAGB 1 cut(s) 38
PsuI RGATCY 2 cut(s) 556, 705
RsaI GTAC 2 cut(s) 171, 752
RsaNI GTAC 2 cut(s) 170, 751
SaqAI TTAA 2 cut(s) 362, 879
SatI GCNGC 2 cut(s) 159, 843
Sau3AI GATC 5 cut(s) 556, 576, 642, 705, 849
Sau96I GGNCC 2 cut(s) 444, 731
ScaI AGTACT 1 cut(s) 171
SchI GAGTC 2 cut(s) 256, 560
ScrFI CCNGG 5 cut(s) 78, 191, 409, 452, 729
SfaNI GCATC 2 cut(s) 170, 209
SfcI CTRYAG 1 cut(s) 64
Sfr274I CTCGAG 1 cut(s) 38
SinI GGWCC 1 cut(s) 731
SlaI CTCGAG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 4 cut(s) 312, 661, 737, 875
SsiI CCGC 1 cut(s) 159
SspMI CTAG 2 cut(s) 560, 839
StyD4I CCNGG 5 cut(s) 76, 189, 407, 450, 727
TaaI ACNGT 3 cut(s) 259, 397, 488
TaiI ACGT 2 cut(s) 369, 516
TaqI TCGA 1 cut(s) 39
TasI AATT 4 cut(s) 312, 661, 737, 875
TatI WGTACW 2 cut(s) 169, 750
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 2 cut(s) 362, 879
Tru9I TTAA 2 cut(s) 362, 879
TscAI CASTG 2 cut(s) 135, 264
TseFI GTSAC 2 cut(s) 130, 259
TseI GCWGC 1 cut(s) 842
Tsp45I GTSAC 2 cut(s) 130, 259
TspDTI ATGAA 5 cut(s) 107, 362, 461, 688, 730
TspGWI ACGGA 2 cut(s) 587, 611
TspRI CASTG 2 cut(s) 135, 264
Van91I CCANNNNNTGG 1 cut(s) 728
VpaK11BI GGWCC 1 cut(s) 731
XapI RAATTY 2 cut(s) 737, 875
XbaI TCTAGA 1 cut(s) 559
XceI RCATGY 1 cut(s) 143
XhoI CTCGAG 1 cut(s) 38
XmnI GAANNNNTTC 1 cut(s) 590
XspI CTAG 2 cut(s) 560, 839
ZrmI AGTACT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.