Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007773

Physical Location & Seq

Genomic Coordinates Reverse (-)

452218 .. 453063

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAAGACAAAACTGAACATAACGGAGAAGAAAAAGTGGAAAAGGAAGAATGGCATATGGTGATGATGACCAAGGATGTAGAACCAGGTGAACCGAAGGACGAGAAGACTGAAGCGGAACTTGAATTAAAGACCGAGTCAGTGGTCAAAGAAAAGTCGAAACATGAAAAGGATGAGGAGAAACGTAACGATGCAGATGAGGAGAAATCGAAGAAGGAGGATAAAGACATGGAGGAGAAGGAAAAGAAGAAAGAGGACAACGAAGCGGGAGAGAGCGACAAGGATAAAAAGAAGGACGAGGAAGAGAAGAAAAAGAACAAGGAGAAGAACAAAGATAAAGACGATGATATAGAAGGGGGAGAAAAAGAGAAAAAGAAGAAGGATAAAAAGGAGAAAGAGGGAAAAGGTAAAGATTTAGAGGAAGGGGATAAGGAAAAAGATGACAAAAAAGGAGGAAAGAAGAAGAAAGACAAGGAGGACAAAAAGAAGAAACATAAAAATGTAGAAGATGAGGAGGAGGTCAAGGCTGAAGTTTCTTCCAGGGAGATTGAAATTGTACAAAACGTAAAGGAATCGGAGGGGGAAATGGAGGAGAAGACGCAGAAAGATGAAGGAAAGGAAGGTAAAGAGAAGAAAGATAAAGAGAAAAAGGAGAAGGACGAGAATAAAAGAAAACTCGATAAGAAGGACAAATGCACGAATGTTGGAAAGCTGAAACAGAAGCTAGAGAAGATCAATGGAAAAATAGAAGCCCTGCTTGAGAAAAAGTCAGACATCACGAGGCACATAAAAGAAGCTGAAGGTGCAATCCTCACTGTTGCTGAGAAGCCCACAGATGCAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

32.78

Weight (kDa)

5.5

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56660 AT1G56660
fragaria_vesca	FvH4_1g28340 FvH4_1g28340 FvH4_1g28340
malus_domestica	MD14G1004000.v1.1
prunus_persica	Prupe.7G006500_v2.0.a1
pyrus_communis	pycom12g00470
rosa_chinensis	RchiOBHm_Chr3g0496751
rosa_laevigata	RLG00000022508
rosa_multiflora	Rmu_co8366833.1_g000001 Rmu_sc0000542.1_g000011 Rmu_sc0001832.1_g000015
rosa_roxburghii	Rroxscaffold_6G00388720
rosa_rugosa	Rorug03G0286300 Rorug03G0286400
rosa_samantha	Rh3AG331000 Rh3BG367000 Rh3BG367200 Rh3BG367400 Rh3BG367600 Rh3CG363700 Rh3DG367000
rosa_wichuraiana	Rw3G028990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	116, 266
AcuI	CTGAAG	3 cut(s)	132, 549, 819
AfaI	GTAC	1 cut(s)	558
AgsI	TTSAA	2 cut(s)	125, 551
AjnI	CCWGG	2 cut(s)	85, 539
AluBI	AGCT	3 cut(s)	712, 724, 797
AluI	AGCT	3 cut(s)	712, 724, 797
ApeKI	GCWGC	1 cut(s)	839
AsuHPI	GGTGA	2 cut(s)	73, 101
BauI	CACGAG	1 cut(s)	778
BbsI	GAAGAC	3 cut(s)	12, 113, 602
BciT130I	CCWGG	2 cut(s)	87, 541
BfaI	CTAG	1 cut(s)	725
BisI	GCNGC	1 cut(s)	840
BlsI	GCNGC	1 cut(s)	841
Bme1390I	CCNGG	2 cut(s)	87, 541
BmrFI	CCNGG	2 cut(s)	87, 541
BmsI	GCATC	2 cut(s)	181, 826
BpiI	GAAGAC	3 cut(s)	12, 113, 602
BpuEI	CTTGAG	1 cut(s)	779
BsaJI	CCNNGG	2 cut(s)	72, 540
BseBI	CCWGG	2 cut(s)	87, 541
BseDI	CCNNGG	2 cut(s)	72, 540
BseGI	GGATG	2 cut(s)	82, 178
BseMII	CTCAG	1 cut(s)	813
BseRI	GAGGAG	6 cut(s)	191, 215, 248, 527, 530, 605
Bsp1407I	TGTACA	1 cut(s)	556
Bsp143I	GATC	1 cut(s)	732
BspACI	CCGC	2 cut(s)	116, 266
BspCNI	CTCAG	1 cut(s)	814
BsrGI	TGTACA	1 cut(s)	556
BssECI	CCNNGG	2 cut(s)	72, 540
BssMI	GATC	1 cut(s)	732
BssSI	CACGAG	1 cut(s)	778
BssT1I	CCWWGG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	778
Bst2UI	CCWGG	2 cut(s)	87, 541
Bst4CI	ACNGT	1 cut(s)	817
Bst6I	CTCTTC	1 cut(s)	297
BstAUI	TGTACA	1 cut(s)	556
BstDEI	CTNAG	1 cut(s)	822
BstF5I	GGATG	2 cut(s)	82, 178
BstKTI	GATC	1 cut(s)	735
BstMBI	GATC	1 cut(s)	732
BstMWI	GCNNNNNNNGC	1 cut(s)	803
BstNI	CCWGG	2 cut(s)	87, 541
BstSCI	CCNGG	2 cut(s)	85, 539
BstV2I	GAAGAC	3 cut(s)	12, 113, 602
BtsCI	GGATG	2 cut(s)	82, 178
BtsIMutI	CAGTG	2 cut(s)	147, 813
CseI	GACGC	1 cut(s)	607
CsiI	ACCWGGT	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	557
CviAII	CATG	2 cut(s)	164, 229
CviJI	RGCY	6 cut(s)	527, 712, 724, 752, 797, 829
CviKI_1	RGCY	6 cut(s)	527, 712, 724, 752, 797, 829
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	1 cut(s)	822
DpnI	GATC	1 cut(s)	734
DpnII	GATC	1 cut(s)	732
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	72
Eco57I	CTGAAG	3 cut(s)	132, 549, 819
EcoRII	CCWGG	2 cut(s)	85, 539
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	167, 232
FaiI	YATR	9 cut(s)	21, 57, 59, 165, 230, 350, 495, 788, 844
FalI	AAGNNNNNCTT	4 cut(s)	105, 137, 741, 773
FatI	CATG	2 cut(s)	163, 228
FauI	CCCGC	1 cut(s)	259
FauNDI	CATATG	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	840
FokI	GGATG	2 cut(s)	89, 185
Fsp4HI	GCNGC	1 cut(s)	840
FspBI	CTAG	1 cut(s)	725
GluI	GCNGC	1 cut(s)	840
HgaI	GACGC	1 cut(s)	607
Hin1II	CATG	2 cut(s)	167, 232
HinfI	GANTC	2 cut(s)	137, 572
HphI	GGTGA	2 cut(s)	73, 101
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	2 cut(s)	577, 772
Hpy188III	TCNNGA	1 cut(s)	778
Hpy8I	GTNNAC	1 cut(s)	92
HpyCH4III	ACNGT	1 cut(s)	817
HpyCH4IV	ACGT	2 cut(s)	184, 564
HpyCH4V	TGCA	4 cut(s)	194, 696, 806, 839
HpyF10VI	GCNNNNNNNGC	1 cut(s)	803
HpyF3I	CTNAG	1 cut(s)	822
HpySE526I	ACGT	2 cut(s)	184, 564
Hsp92II	CATG	2 cut(s)	167, 232
Kzo9I	GATC	1 cut(s)	732
LpnPI	CCDG	5 cut(s)	72, 99, 526, 553, 767
LweI	GCATC	2 cut(s)	181, 826
MabI	ACCWGGT	1 cut(s)	85
MaeI	CTAG	1 cut(s)	725
MaeII	ACGT	2 cut(s)	184, 564
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	1 cut(s)	734
MboI	GATC	1 cut(s)	732
MluCI	AATT	2 cut(s)	125, 552
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	685
MseI	TTAA	1 cut(s)	128
MslI	CAYNNNNRTG	1 cut(s)	498
MspR9I	CCNGG	2 cut(s)	87, 541
MvaI	CCWGG	2 cut(s)	87, 541
MwoI	GCNNNNNNNGC	1 cut(s)	803
NdeI	CATATG	1 cut(s)	57
NdeII	GATC	1 cut(s)	732
NlaIII	CATG	2 cut(s)	167, 232
PfeI	GAWTC	1 cut(s)	572
PflFI	GACNNNGTC	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	841
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Psp6I	CCWGG	2 cut(s)	85, 539
PspGI	CCWGG	2 cut(s)	85, 539
PsyI	GACNNNGTC	1 cut(s)	136
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
RseI	CAYNNNNRTG	1 cut(s)	498
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	1 cut(s)	840
Sau3AI	GATC	1 cut(s)	732
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	87, 541
SexAI	ACCWGGT	1 cut(s)	85
SfaNI	GCATC	2 cut(s)	181, 826
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
Sse9I	AATT	2 cut(s)	125, 552
SsiI	CCGC	2 cut(s)	116, 266
SspMI	CTAG	1 cut(s)	725
StyD4I	CCNGG	2 cut(s)	85, 539
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	817
TaiI	ACGT	2 cut(s)	187, 567
TaqI	TCGA	3 cut(s)	158, 209, 678
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	2 cut(s)	125, 552
TatI	WGTACW	1 cut(s)	556
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TscAI	CASTG	2 cut(s)	147, 820
TseI	GCWGC	1 cut(s)	839
TspDTI	ATGAA	2 cut(s)	180, 624
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	2 cut(s)	147, 820
Tth111I	GACNNNGTC	1 cut(s)	136
XspI	CTAG	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.