Rroxscaffold_6G00388720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0007773
Physical Location & Seq
Reverse (-)
1846857 .. 1848019
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388720.1

Sequence Viewer

Length: 1074 bp
ATGGAAGACAAAGTTGAATGGAAAGGAGAAGAAAGGGTTAACAAGGAAGAACTCCATTTAGTGATCAAGACCAAGGATGCAGAACTAGGTGACTCCAAGAAGGAAAAGACTGAGAAGGAACTTGAAATAAAGACCAAGTCGGTGGAAAAACTGAAGCCAAAGTATAGGGAGGAGGAGGAGAAAGAAACGAAAACGAACAAGGAAAAAGAGAAAGAAGAAGATGAAGAGTTGAAGAAGACAGAGAACAAAGATAAAAAGAAGGACAAGGATAAACAAGGAAAGAAGAAGAAGAAAAAGTGCAAAGATAATGAAGAAGAAGAAGAGATAGAATGCAAAGATGAAAAATCGAGTGTTAAGGATGATTCTAAGCACACAGAGGAAGAGCTGGACAAAAATGAAGAGAAGAAGATAAAGAAGAATAAGCTCAAGGTAGATGAAGAAAGCGATGACCAGAAAGAAGAGAAGAAGAAGGTTAAAGATAAGAAAGAGCAGAAAGAAGGGAAAAAGAAGGGTAAAAATAAAGAGGAGGAGGATGGGGATAATGAGGATGAAGACAATGAAGAAAAGGAAGGGAAGGAAGGGAAAAAGAAGAAGAAAAAGGATAAGGAAAAATATCATGACAATGAAAAAGAGGGGAAGAAAAAGAAAAATAAGAAAGGCAAGGACGAAAAAAAGAAGAAAGACGGGGATTATGATGAAAACGAAGAGAAGCTGGACGAGGAGGAGAGGAAGGAGAAACACAAAAATGTAGAGGATGCGGAGAAGATCAAGGCTGAAGTTGGTTCCAGGGAGATTGAAATAGAAGATGTCAAAGAGTCGGAGGAGGAGAAGCAGAAAGATGTGGTCAAGGAAAGTAAAGAGAAGAAGGACAAAGGCGAAAAGAAACGAAAGGTTGATAAGAAAGAAAAGTGCAACGACGTCGGAAAGCTGAAACAGAAGCTAGAGAAAATTAATGGCAAAATAGAAGCACTCGTTGAAGAAAAGGCAGATATCATGAGGCAGATAAAAGAAGCTCAAGGAACAAGTCTCACTGTTTCGGAGACGCCCTCAGATGCAGCAGTGGCGGCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

42.05

Weight (kDa)

6.06

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 921
AciI CCGC 2 cut(s) 758, 1064
AcuI CTGAAG 2 cut(s) 173, 795
AcyI GRCGYC 2 cut(s) 918, 1043
AgsI TTSAA 5 cut(s) 17, 125, 232, 797, 977
AjnI CCWGG 1 cut(s) 785
AluBI AGCT 6 cut(s) 385, 424, 712, 928, 940, 1013
AluI AGCT 6 cut(s) 385, 424, 712, 928, 940, 1013
Alw26I GTCTC 2 cut(s) 1031, 1034
ApeKI GCWGC 1 cut(s) 1055
AseI ATTAAT 1 cut(s) 951
AsuHPI GGTGA 1 cut(s) 101
BbsI GAAGAC 3 cut(s) 12, 242, 558
BbvI GCAGC 1 cut(s) 1067
BccI CCATC 1 cut(s) 527
BcgI CGANNNNNNTGC 2 cut(s) 901, 935
BciT130I CCWGG 1 cut(s) 787
BclI TGATCA 1 cut(s) 63
BcoDI GTCTC 2 cut(s) 1031, 1034
BfaI CTAG 2 cut(s) 86, 941
BisI GCNGC 2 cut(s) 1056, 1065
BlsI GCNGC 2 cut(s) 1057, 1066
Bme1390I CCNGG 1 cut(s) 787
BmiI GGNNCC 1 cut(s) 784
BmrFI CCNGG 1 cut(s) 787
BmsI GCATC 3 cut(s) 67, 745, 1042
BpiI GAAGAC 3 cut(s) 12, 242, 558
BplI GAGNNNNNCTC 2 cut(s) 1031, 1063
BpuEI CTTGAG 2 cut(s) 410, 999
BsaHI GRCGYC 2 cut(s) 918, 1043
BsaJI CCNNGG 2 cut(s) 72, 786
BseBI CCWGG 1 cut(s) 787
BseDI CCNNGG 2 cut(s) 72, 786
BseGI GGATG 5 cut(s) 82, 364, 538, 553, 760
BseMII CTCAG 2 cut(s) 102, 1062
BseRI GAGGAG 9 cut(s) 185, 188, 191, 539, 542, 734, 737, 836, 839
BseXI GCAGC 1 cut(s) 1067
BsmAI GTCTC 2 cut(s) 1031, 1034
BsmBI CGTCTC 1 cut(s) 1034
BsmI GAATGC 1 cut(s) 335
Bsp143I GATC 2 cut(s) 63, 765
BspACI CCGC 2 cut(s) 758, 1064
BspCNI CTCAG 2 cut(s) 103, 1061
BspHI TCATGA 2 cut(s) 616, 993
BspLI GGNNCC 1 cut(s) 784
BspQI GCTCTTC 1 cut(s) 375
BssECI CCNNGG 2 cut(s) 72, 786
BssMI GATC 2 cut(s) 63, 765
BssNI GRCGYC 2 cut(s) 918, 1043
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 787
Bst4CI ACNGT 1 cut(s) 1033
Bst6I CTCTTC 6 cut(s) 219, 315, 375, 393, 453, 699
BstACI GRCGYC 2 cut(s) 918, 1043
BstDEI CTNAG 3 cut(s) 111, 366, 1048
BstF5I GGATG 5 cut(s) 82, 364, 538, 553, 760
BstKTI GATC 2 cut(s) 66, 768
BstMAI GTCTC 2 cut(s) 1031, 1034
BstMBI GATC 2 cut(s) 63, 765
BstMWI GCNNNNNNNGC 2 cut(s) 1061, 1064
BstNI CCWGG 1 cut(s) 787
BstSCI CCNGG 1 cut(s) 785
BstV1I GCAGC 1 cut(s) 1067
BstV2I GAAGAC 3 cut(s) 12, 242, 558
BstXI CCANNNNNNTGG 1 cut(s) 142
BtgZI GCGATG 1 cut(s) 459
BtsCI GGATG 5 cut(s) 82, 364, 538, 553, 760
BtsI GCAGTG 1 cut(s) 1065
BtsIMutI CAGTG 2 cut(s) 1029, 1065
CciI TCATGA 2 cut(s) 616, 993
CseI GACGC 1 cut(s) 1051
CviAII CATG 2 cut(s) 617, 994
CviJI RGCY 8 cut(s) 157, 385, 424, 712, 773, 928, 940, 1013
CviKI_1 RGCY 8 cut(s) 157, 385, 424, 712, 773, 928, 940, 1013
DdeI CTNAG 3 cut(s) 111, 366, 1048
DpnI GATC 2 cut(s) 65, 767
DpnII GATC 2 cut(s) 63, 765
Eam1104I CTCTTC 6 cut(s) 219, 315, 375, 393, 453, 699
EarI CTCTTC 6 cut(s) 219, 315, 375, 393, 453, 699
Eco130I CCWWGG 1 cut(s) 72
Eco32I GATATC 1 cut(s) 991
Eco57I CTGAAG 2 cut(s) 173, 795
EcoRII CCWGG 1 cut(s) 785
EcoRV GATATC 1 cut(s) 991
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
Esp3I CGTCTC 1 cut(s) 1034
FaeI CATG 2 cut(s) 620, 997
FaiI YATR 4 cut(s) 165, 618, 693, 995
FatI CATG 2 cut(s) 616, 993
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 1056, 1065
FokI GGATG 5 cut(s) 89, 371, 545, 560, 767
Fsp4HI GCNGC 2 cut(s) 1056, 1065
FspBI CTAG 2 cut(s) 86, 941
GluI GCNGC 2 cut(s) 1056, 1065
HgaI GACGC 1 cut(s) 1051
Hin1I GRCGYC 2 cut(s) 918, 1043
Hin1II CATG 2 cut(s) 620, 997
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 3 cut(s) 92, 362, 815
HpaI GTTAAC 1 cut(s) 40
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 4 cut(s) 820, 923, 1039, 1051
Hpy188III TCNNGA 4 cut(s) 67, 617, 994, 1071
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 2 cut(s) 920, 923
HpyCH4III ACNGT 1 cut(s) 1033
HpyCH4IV ACGT 1 cut(s) 918
HpyCH4V TGCA 5 cut(s) 80, 300, 333, 912, 1055
HpyF10VI GCNNNNNNNGC 2 cut(s) 1061, 1064
HpyF3I CTNAG 3 cut(s) 111, 366, 1048
HpySE526I ACGT 1 cut(s) 918
Hsp92I GRCGYC 2 cut(s) 918, 1043
Hsp92II CATG 2 cut(s) 620, 997
Ksp22I TGATCA 1 cut(s) 63
KspAI GTTAAC 1 cut(s) 40
Kzo9I GATC 2 cut(s) 63, 765
LguI GCTCTTC 1 cut(s) 375
LpnPI CCDG 5 cut(s) 371, 464, 698, 772, 799
Lsp1109I GCAGC 1 cut(s) 1067
LweI GCATC 3 cut(s) 67, 745, 1042
MaeI CTAG 2 cut(s) 86, 941
MaeII ACGT 1 cut(s) 918
MaeIII GTNAC 1 cut(s) 89
MalI GATC 2 cut(s) 65, 767
MboI GATC 2 cut(s) 63, 765
MluCI AATT 1 cut(s) 948
MlyI GAGTC 2 cut(s) 86, 824
MmeI TCCRAC 2 cut(s) 798, 901
MseI TTAA 4 cut(s) 39, 354, 474, 951
MslI CAYNNNNRTG 2 cut(s) 621, 744
MspR9I CCNGG 1 cut(s) 787
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 1 cut(s) 787
MwoI GCNNNNNNNGC 2 cut(s) 1061, 1064
NdeII GATC 2 cut(s) 63, 765
NlaIII CATG 2 cut(s) 620, 997
NlaIV GGNNCC 1 cut(s) 784
NmuCI GTSAC 1 cut(s) 89
PagI TCATGA 2 cut(s) 616, 993
PciSI GCTCTTC 1 cut(s) 375
PctI GAATGC 1 cut(s) 335
PfeI GAWTC 1 cut(s) 362
PflFI GACNNNGTC 1 cut(s) 136
PkrI GCNGC 2 cut(s) 1057, 1066
PleI GAGTC 2 cut(s) 86, 823
PpsI GAGTC 2 cut(s) 86, 823
PshBI ATTAAT 1 cut(s) 951
Psp6I CCWGG 1 cut(s) 785
PspGI CCWGG 1 cut(s) 785
PspN4I GGNNCC 1 cut(s) 784
PsyI GACNNNGTC 1 cut(s) 136
RseI CAYNNNNRTG 2 cut(s) 621, 744
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 4 cut(s) 39, 354, 474, 951
SatI GCNGC 2 cut(s) 1056, 1065
Sau3AI GATC 2 cut(s) 63, 765
SchI GAGTC 2 cut(s) 86, 824
ScrFI CCNGG 1 cut(s) 787
SfaNI GCATC 3 cut(s) 67, 745, 1042
SmiMI CAYNNNNRTG 2 cut(s) 621, 744
SmlI CTYRAG 2 cut(s) 425, 1014
SmoI CTYRAG 2 cut(s) 425, 1014
Sse9I AATT 1 cut(s) 948
SsiI CCGC 2 cut(s) 758, 1064
SspMI CTAG 2 cut(s) 86, 941
StyD4I CCNGG 1 cut(s) 785
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 1033
TaiI ACGT 1 cut(s) 921
TaqI TCGA 1 cut(s) 347
TasI AATT 1 cut(s) 948
TauI GCSGC 1 cut(s) 1067
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 4 cut(s) 39, 354, 474, 951
Tru9I TTAA 4 cut(s) 39, 354, 474, 951
TscAI CASTG 2 cut(s) 1036, 1065
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 1 cut(s) 1055
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 9 cut(s) 237, 324, 354, 411, 450, 564, 573, 639, 711
TspRI CASTG 2 cut(s) 1036, 1065
Tth111I GACNNNGTC 1 cut(s) 136
VspI ATTAAT 1 cut(s) 951
XspI CTAG 2 cut(s) 86, 941
ZraI GACGTC 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.