Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008834

Physical Location & Seq

Genomic Coordinates Forward (+)

22423012 .. 22427331

Gene Structure 4320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29410.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAGGTGGTGGAAGACATGCTGTATCTGCAATTGCACAAGTTATCAGCCATTAAATCAGAGGAAGCAGTCCAACAATTGCTTTCCATTCTGTGGAAAACAAGGAGAACTGGTCTCCGCGACAAGTCCCACTTGCAGTCTCTCCTGAATCTTCAGTCACTCTCCGACCTCGACCCCGTTCTGGCATGCCTTCGTTCGCTCATCCGAAAATGGGTACATGAAAGCTTGACTGCCAACCACCTTTTGAAGCTCTTCCCACCCGATTTGCCCCTCCATTTGCAGACCCTTTTGGTCTTGTCCTTCCAGAAGTATCAGTCTCAATGGAAGGACGAGATAGCCAGAGAACAGCCCAGAGGAACCGGTGTGTGTTCAACCCCTTTGGGTATGTCAGGCTCATTGCATGATGATCATGTTGCTCAATTAACTCCACGACATGAATTCACTCCCATGTCTCCTCGCAACTTGGGAAATCTACCTCGTCTGAAGTCAATGACTTGGACCATGGAGAACTGTAACTCCGGATCAGCTAACAAAGTGGCCGTCATTAATCTCAAGCTGCAAGACCATACCAAATCTAGTCTAGATGAAATCGAGGTGAAGTTCCAACTGACTAGGGACACTCTTGAAGCAATGATGAGGTCATTGACCTACATCAGAGAACAACTCTCAAGCATGGTTGCTGCTTCTGGGCCGTCACCGAAGAAGCAAAAGCAGTCAGATCATGTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMM_domain

Protein Analysis

244

Amino Acids

27.6

Weight (kDa)

8.96

Isoelectric Point (pI)

56.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008834)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29410 FvH4_1g29410 FvH4_1g29410 FvH4_1g29410 FvH4_1g29410
malus_domestica	MD14G1012800.v1.1
prunus_persica	Prupe.1G058500_v2.0.a1 Prupe.7G025800_v2.0.a1 Prupe.7G025800_v2.0.a1 Prupe.7G025800_v2.0.a1
pyrus_communis	pycom14g01080
rosa_chinensis	RchiOBHm_Chr3g0495501
rosa_laevigata	RLG00000022615
rosa_multiflora	Rmu_sc0004755.1_g000025 Rmu_sc0006163.1_g000015
rosa_roxburghii	Rroxscaffold_6G00390480
rosa_rugosa	Rorug03G0273800 Rorug03G0273900
rosa_samantha	Rh3AG321500 Rh3BG356800 Rh3CG353600 Rh3DG356100
rosa_wichuraiana	Rw3G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccII	CGCG	1 cut(s)	120
AccIII	TCCGGA	1 cut(s)	518
AciI	CCGC	1 cut(s)	118
AclWI	GGATC	1 cut(s)	529
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	1 cut(s)	437
AcuI	CTGAAG	2 cut(s)	137, 503
AfaI	GTAC	1 cut(s)	216
AfiI	CCNNNNNNNGG	3 cut(s)	93, 181, 211
AgeI	ACCGGT	1 cut(s)	359
AgsI	TTSAA	3 cut(s)	247, 372, 626
AloI	GAACNNNNNNTCC	2 cut(s)	500, 532
AluBI	AGCT	4 cut(s)	225, 250, 527, 556
AluI	AGCT	4 cut(s)	225, 250, 527, 556
Alw26I	GTCTC	4 cut(s)	119, 144, 321, 456
AlwI	GGATC	1 cut(s)	529
Aor13HI	TCCGGA	1 cut(s)	518
AoxI	GGCC	2 cut(s)	537, 689
ApeKI	GCWGC	2 cut(s)	556, 680
ApoI	RAATTY	1 cut(s)	437
ArsI	GACNNNNNNTTYG	2 cut(s)	525, 557
AseI	ATTAAT	1 cut(s)	546
AsiGI	ACCGGT	1 cut(s)	359
Asp700I	GAANNNNTTC	1 cut(s)	251
AspS9I	GGNCC	2 cut(s)	498, 689
AsuHPI	GGTGA	2 cut(s)	607, 687
AvaII	GGWCC	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	543, 667
BceAI	ACGGC	2 cut(s)	524, 676
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	4 cut(s)	119, 144, 321, 456
BfaI	CTAG	3 cut(s)	576, 581, 612
BisI	GCNGC	2 cut(s)	557, 681
BlsI	GCNGC	2 cut(s)	558, 682
Bme18I	GGWCC	1 cut(s)	498
BmgT120I	GGNCC	2 cut(s)	498, 689
BmiI	GGNNCC	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	648, 680
BpuEI	CTTGAG	2 cut(s)	536, 652
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	501
BsaWI	WCCGGW	2 cut(s)	359, 518
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 127, 500, 530
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 181, 211
Bse118I	RCCGGY	1 cut(s)	359
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	2 cut(s)	395, 636
BseAI	TCCGGA	1 cut(s)	518
BseDI	CCNNGG	1 cut(s)	501
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	3 cut(s)	93, 181, 211
BseMI	GCAATG	2 cut(s)	395, 636
BseNI	ACTGG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	444
BseXI	GCAGC	2 cut(s)	543, 667
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	539, 691
BshTI	ACCGGT	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	360, 519
BslFI	GGGAC	2 cut(s)	112, 629
BslI	CCNNNNNNNGG	3 cut(s)	93, 181, 211
BsmAI	GTCTC	4 cut(s)	119, 144, 321, 456
BsmFI	GGGAC	2 cut(s)	112, 629
BsnI	GGCC	2 cut(s)	539, 691
Bso31I	GGTCTC	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	518
Bsp143I	GATC	3 cut(s)	406, 521, 718
Bsp19I	CCATGG	1 cut(s)	501
BspACI	CCGC	1 cut(s)	118
BspANI	GGCC	2 cut(s)	539, 691
BspEI	TCCGGA	1 cut(s)	518
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	358
BspPI	GGATC	1 cut(s)	529
BspQI	GCTCTTC	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	119
BsrDI	GCAATG	2 cut(s)	395, 636
BsrFI	RCCGGY	1 cut(s)	359
BsrI	ACTGG	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	501
BssMI	GATC	3 cut(s)	406, 521, 718
BssT1I	CCWWGG	1 cut(s)	501
Bst4CI	ACNGT	1 cut(s)	512
Bst6I	CTCTTC	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	187
BstDSI	CCRYGG	1 cut(s)	501
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	3 cut(s)	409, 524, 721
BstMAI	GTCTC	4 cut(s)	119, 144, 321, 456
BstMBI	GATC	3 cut(s)	406, 521, 718
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNSI	RCATGY	2 cut(s)	22, 189
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	543, 667
BstV2I	GAAGAC	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	539, 691
BtgI	CCRYGG	1 cut(s)	501
BtsCI	GGATG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	2 cut(s)	498, 689
Csp6I	GTAC	1 cut(s)	215
CspAI	ACCGGT	1 cut(s)	359
CspCI	CAANNNNNGTGG	2 cut(s)	246, 281
CviQI	GTAC	1 cut(s)	215
DpnI	GATC	3 cut(s)	408, 523, 720
DpnII	GATC	3 cut(s)	406, 521, 718
EaeI	YGGCCR	1 cut(s)	537
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	501
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	498
Eco57I	CTGAAG	2 cut(s)	137, 503
EcoRI	GAATTC	1 cut(s)	437
EcoT14I	CCWWGG	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	501
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	2 cut(s)	112, 629
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	2 cut(s)	557, 681
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	557, 681
FspBI	CTAG	3 cut(s)	576, 581, 612
GluI	GCNGC	2 cut(s)	557, 681
HaeIII	GGCC	2 cut(s)	539, 691
HapII	CCGG	2 cut(s)	360, 519
HindIII	AAGCTT	1 cut(s)	223
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	2 cut(s)	360, 519
HphI	GGTGA	2 cut(s)	607, 687
Hpy188I	TCNGA	6 cut(s)	61, 166, 206, 483, 656, 718
Hpy188III	TCNNGA	5 cut(s)	145, 304, 519, 581, 623
HpyAV	CCTTC	3 cut(s)	200, 310, 319
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4V	TGCA	6 cut(s)	31, 37, 136, 280, 400, 559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
Kpn2I	TCCGGA	1 cut(s)	518
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	406, 521, 718
LguI	GCTCTTC	1 cut(s)	257
Lsp1109I	GCAGC	2 cut(s)	543, 667
MaeI	CTAG	3 cut(s)	576, 581, 612
MaeIII	GTNAC	3 cut(s)	156, 512, 693
MalI	GATC	3 cut(s)	408, 523, 720
MboI	GATC	3 cut(s)	406, 521, 718
MboII	GAAGA	4 cut(s)	26, 143, 244, 712
MfeI	CAATTG	2 cut(s)	32, 77
MluCI	AATT	4 cut(s)	32, 77, 419, 437
MmeI	TCCRAC	3 cut(s)	97, 189, 628
MnlI	CCTC	8 cut(s)	55, 179, 281, 347, 465, 486, 586, 630
MroI	TCCGGA	1 cut(s)	518
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	3 cut(s)	54, 422, 546
MslI	CAYNNNNRTG	1 cut(s)	446
MspI	CCGG	2 cut(s)	360, 519
MunI	CAATTG	2 cut(s)	32, 77
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	28
NcoI	CCATGG	1 cut(s)	501
NdeII	GATC	3 cut(s)	406, 521, 718
NlaIV	GGNNCC	1 cut(s)	358
NmuCI	GTSAC	2 cut(s)	156, 693
NspI	RCATGY	2 cut(s)	22, 189
PaeI	GCATGC	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	257
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	148
PflMI	CCANNNNNTGG	1 cut(s)	93
PinAI	ACCGGT	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	558, 682
PshBI	ATTAAT	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	358
PspPI	GGNCC	2 cut(s)	498, 689
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	446
SapI	GCTCTTC	1 cut(s)	257
SaqAI	TTAA	3 cut(s)	54, 422, 546
SatI	GCNGC	2 cut(s)	557, 681
Sau3AI	GATC	3 cut(s)	406, 521, 718
Sau96I	GGNCC	2 cut(s)	498, 689
SinI	GGWCC	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	2 cut(s)	551, 667
SmoI	CTYRAG	2 cut(s)	551, 667
SphI	GCATGC	1 cut(s)	189
Sse9I	AATT	4 cut(s)	32, 77, 419, 437
SsiI	CCGC	1 cut(s)	118
SspMI	CTAG	3 cut(s)	576, 581, 612
StyI	CCWWGG	1 cut(s)	501
TaaI	ACNGT	1 cut(s)	512
TaqI	TCGA	2 cut(s)	171, 591
TasI	AATT	4 cut(s)	32, 77, 419, 437
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	3 cut(s)	54, 422, 546
Tru9I	TTAA	3 cut(s)	54, 422, 546
TseFI	GTSAC	2 cut(s)	156, 693
TseI	GCWGC	2 cut(s)	556, 680
Tsp45I	GTSAC	2 cut(s)	156, 693
TspDTI	ATGAA	3 cut(s)	234, 450, 600
Van91I	CCANNNNNTGG	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	498
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	1 cut(s)	437
XbaI	TCTAGA	1 cut(s)	580
XceI	RCATGY	2 cut(s)	22, 189
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	3 cut(s)	576, 581, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.