MD14G1012800.v1.1

COMM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0008834
Physical Location & Seq
Forward (+)
1167496 .. 1170391
2896 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1012800.v1.1.491

Sequence Viewer

Length: 804 bp
ATGCAAATGGAGACGACGGTGGAAGATACGTTGTACCTGCAGCTGCACAAGCTCTCCGCCACAGAGGAAGCGGCACTCGACCAGTTGCTCTCCACTCTATGGCAAACCAGGAAAACCGGCCTCCACTCTCCCCACCAAAAATCCCACTTCCAATCTCTCCTCCATCTCCCTTCTCTCTCCCACCTCGACCCTGTTTTGGCATGCCTTCGATCGCTTATCAGAAAATGGGTACACGAGAACTTCACCGCCAACGACGTTTTGAAGCTGTTTCCGCCCGATTTGCCACTCGATTTGCAGAGCAGTTTGGTGTTGTTGCTCCAGAAGTATCAGGTTCAGTGGAAGGACGAAGTAGCTACAGAACAGCGTTCATTGCCAAGGGCTAGTGTTGCATATCAGGTCAAGGCGAATGTGCCGCCGACCTTCACCTCTTTGGGTACCTCTGGCTCATTAAATGATTTTGGAGCTTCAACAACGCCGATTGTTTCTGCTACTGATGCATCTCAACTCACTTCCATGCCTCCTGCAAACCTGGTGGGAATTCTACCTCGCCTAAAGTCAATGACTTGGACCATGGAGAACTGTAACTCAGGGCCGGCTAATAAAGTGGCCGTCATCACTCTAAAGTTGCAAGATTATACCAAATCTCCGTTAGATGAAACGGAGGTGAAGTTTCAACTGACTAGGGACACTCTGGAAGCTATGCTGAGATCACTGACATACATTAAGGAACAACTCTCAAGCATGGTCGGAGGAACTTCGGGGCCATCACAGAAGAAGCAAAAGCAATCGGATCATTTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMM_domain

Protein Analysis

268

Amino Acids

29.68

Weight (kDa)

7.1

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 45
Acc65I GGTACC 1 cut(s) 434
AccB1I GGYRCC 1 cut(s) 434
AccB7I CCANNNNNTGG 1 cut(s) 99
AciI CCGC 5 cut(s) 57, 71, 246, 272, 413
AclWI GGATC 1 cut(s) 798
AcoI YGGCCR 1 cut(s) 606
AcsI RAATTY 1 cut(s) 537
AfaI GTAC 3 cut(s) 35, 231, 436
AfiI CCNNNNNNNGG 2 cut(s) 99, 196
AgsI TTSAA 3 cut(s) 262, 468, 674
AjnI CCWGG 2 cut(s) 107, 528
AluBI AGCT 6 cut(s) 43, 52, 265, 353, 464, 698
AluI AGCT 6 cut(s) 43, 52, 265, 353, 464, 698
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 1 cut(s) 798
AoxI GGCC 4 cut(s) 118, 590, 606, 761
ApeKI GCWGC 2 cut(s) 40, 43
ApoI RAATTY 1 cut(s) 537
Asp718I GGTACC 1 cut(s) 434
AspS9I GGNCC 3 cut(s) 567, 590, 761
AsuHPI GGTGA 3 cut(s) 235, 415, 676
AvaII GGWCC 1 cut(s) 567
BanI GGYRCC 1 cut(s) 434
BauI CACGAG 1 cut(s) 233
BbvI GCAGC 2 cut(s) 30, 52
BccI CCATC 2 cut(s) 171, 772
BceAI ACGGC 1 cut(s) 593
BciT130I CCWGG 2 cut(s) 109, 530
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 2 cut(s) 381, 681
BfmI CTRYAG 2 cut(s) 38, 354
BfuAI ACCTGC 1 cut(s) 45
BisI GCNGC 4 cut(s) 41, 44, 72, 413
BlsI GCNGC 4 cut(s) 42, 45, 73, 414
Bme1390I CCNGG 2 cut(s) 109, 530
Bme18I GGWCC 1 cut(s) 567
BmgT120I GGNCC 3 cut(s) 567, 590, 761
BmiI GGNNCC 2 cut(s) 436, 762
BmrFI CCNGG 2 cut(s) 109, 530
BmsI GCATC 2 cut(s) 484, 506
BpmI CTGGAG 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 721
BsaJI CCNNGG 2 cut(s) 374, 570
BsaXI ACNNNNNCTCC 6 cut(s) 38, 68, 628, 653, 658, 683
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 196
Bse118I RCCGGY 2 cut(s) 116, 592
Bse1I ACTGG 1 cut(s) 82
Bse3DI GCAATG 1 cut(s) 368
BseBI CCWGG 2 cut(s) 109, 530
BseDI CCNNGG 2 cut(s) 374, 570
BseLI CCNNNNNNNGG 2 cut(s) 99, 196
BseMI GCAATG 1 cut(s) 368
BseMII CTCAG 2 cut(s) 600, 695
BseNI ACTGG 1 cut(s) 82
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 2 cut(s) 30, 52
BsgI GTGCAG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 212
BshFI GGCC 4 cut(s) 120, 592, 608, 763
BshNI GGYRCC 1 cut(s) 434
BsiEI CGRYCG 1 cut(s) 212
BsiSI CCGG 2 cut(s) 117, 593
BslFI GGGAC 1 cut(s) 698
BslI CCNNNNNNNGG 2 cut(s) 99, 196
BsmAI GTCTC 1 cut(s) 5
BsmBI CGTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 698
BsnI GGCC 4 cut(s) 120, 592, 608, 763
Bsp143I GATC 3 cut(s) 209, 707, 790
Bsp19I CCATGG 1 cut(s) 570
BspACI CCGC 5 cut(s) 57, 71, 246, 272, 413
BspANI GGCC 4 cut(s) 120, 592, 608, 763
BspCNI CTCAG 2 cut(s) 599, 696
BspLI GGNNCC 2 cut(s) 436, 762
BspMAI CTGCAG 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 45
BspPI GGATC 1 cut(s) 798
BspT107I GGYRCC 1 cut(s) 434
BsrDI GCAATG 1 cut(s) 368
BsrFI RCCGGY 2 cut(s) 116, 592
BsrI ACTGG 1 cut(s) 82
BssAI RCCGGY 2 cut(s) 116, 592
BssECI CCNNGG 2 cut(s) 374, 570
BssMI GATC 3 cut(s) 209, 707, 790
BssSI CACGAG 1 cut(s) 233
BssT1I CCWWGG 2 cut(s) 374, 570
Bst2BI CACGAG 1 cut(s) 233
Bst2UI CCWGG 2 cut(s) 109, 530
Bst4CI ACNGT 2 cut(s) 19, 581
BstC8I GCNNGC 2 cut(s) 202, 594
BstDEI CTNAG 2 cut(s) 586, 704
BstDSI CCRYGG 1 cut(s) 570
BstKTI GATC 3 cut(s) 212, 710, 793
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 3 cut(s) 209, 707, 790
BstMCI CGRYCG 1 cut(s) 212
BstMWI GCNNNNNNNGC 6 cut(s) 49, 271, 280, 370, 386, 494
BstNI CCWGG 2 cut(s) 109, 530
BstNSI RCATGY 1 cut(s) 204
BstSCI CCNGG 2 cut(s) 107, 528
BstSFI CTRYAG 2 cut(s) 38, 354
BstV1I GCAGC 2 cut(s) 30, 52
BsuRI GGCC 4 cut(s) 120, 592, 608, 763
BtgI CCRYGG 1 cut(s) 570
BtsIMutI CAGTG 2 cut(s) 341, 710
BveI ACCTGC 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 202, 594
Cfr10I RCCGGY 2 cut(s) 116, 592
Cfr13I GGNCC 3 cut(s) 567, 590, 761
CsiI ACCWGGT 1 cut(s) 528
Csp6I GTAC 3 cut(s) 34, 230, 435
CspCI CAANNNNNGTGG 4 cut(s) 273, 308, 513, 548
CviAII CATG 4 cut(s) 201, 514, 571, 742
CviQI GTAC 3 cut(s) 34, 230, 435
DdeI CTNAG 2 cut(s) 586, 704
DpnI GATC 3 cut(s) 211, 709, 792
DpnII GATC 3 cut(s) 209, 707, 790
EaeI YGGCCR 1 cut(s) 606
EciI GGCGGA 2 cut(s) 46, 261
Eco130I CCWWGG 2 cut(s) 374, 570
Eco47I GGWCC 1 cut(s) 567
EcoRI GAATTC 1 cut(s) 537
EcoRII CCWGG 2 cut(s) 107, 528
EcoT14I CCWWGG 2 cut(s) 374, 570
EcoT22I ATGCAT 1 cut(s) 499
ErhI CCWWGG 2 cut(s) 374, 570
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 4 cut(s) 204, 517, 574, 745
FaiI YATR 9 cut(s) 100, 202, 391, 515, 572, 636, 701, 718, 743
FaqI GGGAC 1 cut(s) 698
FatI CATG 4 cut(s) 200, 513, 570, 741
Fnu4HI GCNGC 4 cut(s) 41, 44, 72, 413
Fsp4HI GCNGC 4 cut(s) 41, 44, 72, 413
FspBI CTAG 2 cut(s) 381, 681
GluI GCNGC 4 cut(s) 41, 44, 72, 413
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 4 cut(s) 120, 592, 608, 763
HapII CCGG 2 cut(s) 117, 593
Hin1II CATG 4 cut(s) 204, 517, 574, 745
HpaII CCGG 2 cut(s) 117, 593
HphI GGTGA 3 cut(s) 235, 415, 676
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 221, 749, 790
Hpy188III TCNNGA 2 cut(s) 319, 692
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 2 cut(s) 19, 257
HpyAV CCTTC 4 cut(s) 180, 215, 334, 430
HpyCH4III ACNGT 2 cut(s) 19, 581
HpyCH4IV ACGT 2 cut(s) 29, 255
HpyCH4V TGCA 8 cut(s) 4, 40, 46, 295, 389, 497, 524, 628
HpyF10VI GCNNNNNNNGC 6 cut(s) 49, 271, 280, 370, 386, 494
HpyF3I CTNAG 2 cut(s) 586, 704
HpySE526I ACGT 2 cut(s) 29, 255
Hsp92II CATG 4 cut(s) 204, 517, 574, 745
KpnI GGTACC 1 cut(s) 438
KroI GCCGGC 1 cut(s) 592
KroNI GCCGGC 1 cut(s) 594
Kzo9I GATC 3 cut(s) 209, 707, 790
LmnI GCTCC 2 cut(s) 321, 461
Lsp1109I GCAGC 2 cut(s) 30, 52
LweI GCATC 2 cut(s) 484, 506
MabI ACCWGGT 1 cut(s) 528
MaeI CTAG 2 cut(s) 381, 681
MaeII ACGT 2 cut(s) 29, 255
MaeIII GTNAC 1 cut(s) 581
MalI GATC 3 cut(s) 211, 709, 792
MboI GATC 3 cut(s) 209, 707, 790
MboII GAAGA 2 cut(s) 35, 784
MluCI AATT 1 cut(s) 537
MmeI TCCRAC 1 cut(s) 727
Mph1103I ATGCAT 1 cut(s) 499
MroNI GCCGGC 1 cut(s) 592
MseI TTAA 2 cut(s) 449, 723
MslI CAYNNNNRTG 1 cut(s) 512
MspA1I CMGCKG 1 cut(s) 43
MspI CCGG 2 cut(s) 117, 593
MspR9I CCNGG 2 cut(s) 109, 530
MvaI CCWGG 2 cut(s) 109, 530
MwoI GCNNNNNNNGC 6 cut(s) 49, 271, 280, 370, 386, 494
NaeI GCCGGC 1 cut(s) 594
NcoI CCATGG 1 cut(s) 570
NdeII GATC 3 cut(s) 209, 707, 790
NgoMIV GCCGGC 1 cut(s) 592
NlaIII CATG 4 cut(s) 204, 517, 574, 745
NlaIV GGNNCC 2 cut(s) 436, 762
NsiI ATGCAT 1 cut(s) 499
NspI RCATGY 1 cut(s) 204
PaeI GCATGC 1 cut(s) 204
PdiI GCCGGC 1 cut(s) 594
PflMI CCANNNNNTGG 1 cut(s) 99
PkrI GCNGC 4 cut(s) 42, 45, 73, 414
Ple19I CGATCG 1 cut(s) 212
Psp6I CCWGG 2 cut(s) 107, 528
PspGI CCWGG 2 cut(s) 107, 528
PspN4I GGNNCC 2 cut(s) 436, 762
PspPI GGNCC 3 cut(s) 567, 590, 761
PstI CTGCAG 1 cut(s) 42
PvuI CGATCG 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 43
RsaI GTAC 3 cut(s) 35, 231, 436
RsaNI GTAC 3 cut(s) 34, 230, 435
RseI CAYNNNNRTG 1 cut(s) 512
SaqAI TTAA 2 cut(s) 449, 723
SatI GCNGC 4 cut(s) 41, 44, 72, 413
Sau3AI GATC 3 cut(s) 209, 707, 790
Sau96I GGNCC 3 cut(s) 567, 590, 761
ScrFI CCNGG 2 cut(s) 109, 530
SexAI ACCWGGT 1 cut(s) 528
SfaNI GCATC 2 cut(s) 484, 506
SfcI CTRYAG 2 cut(s) 38, 354
SinI GGWCC 1 cut(s) 567
SmiMI CAYNNNNRTG 1 cut(s) 512
SmlI CTYRAG 1 cut(s) 736
SmoI CTYRAG 1 cut(s) 736
SphI GCATGC 1 cut(s) 204
Sse9I AATT 1 cut(s) 537
SsiI CCGC 5 cut(s) 57, 71, 246, 272, 413
SspMI CTAG 2 cut(s) 381, 681
StyD4I CCNGG 2 cut(s) 107, 528
StyI CCWWGG 2 cut(s) 374, 570
TaaI ACNGT 2 cut(s) 19, 581
TaiI ACGT 2 cut(s) 32, 258
TaqI TCGA 4 cut(s) 78, 186, 208, 288
TasI AATT 1 cut(s) 537
TauI GCSGC 2 cut(s) 74, 415
Tru1I TTAA 2 cut(s) 449, 723
Tru9I TTAA 2 cut(s) 449, 723
TscAI CASTG 2 cut(s) 341, 717
TseI GCWGC 2 cut(s) 40, 43
TspDTI ATGAA 2 cut(s) 357, 669
TspGWI ACGGA 2 cut(s) 636, 674
TspRI CASTG 2 cut(s) 341, 717
Van91I CCANNNNNTGG 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 567
XapI RAATTY 1 cut(s) 537
XceI RCATGY 1 cut(s) 204
XspI CTAG 2 cut(s) 381, 681
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.