Prupe.7G025800_v2.0.a1

COMM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0008834
Physical Location & Seq
Reverse (-)
4140062 .. 4144216
4155 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G025800.1

Sequence Viewer

Length: 870 bp
ATGAGCTGTCTCTTCTTCTACTCAGAGCAGCAGCCACAAGAACCCAACAGAACAAATGAGAAAAGAATGGAGGTCATGGAGGACACACTGCACCTGCAATTGCATAAGCTATCAGCCCTAAAATCAGAGGAAGCACTTGACCAATTGCTTTGCACTCTCTGGAAAACCAGGAAAACCGGTCTCCACTCCCCCCACCAAAAGTCCCACTTCCAATCTCTCCTCAATCTGCCTTCTCTTTCACAACTCCATCCCGTTTTGGCATGCCTTCGATCGCTTATCAGAAAATGGGTACATGAAAACTTCACTGGTGATGACCTTTTGAAGCTCTTCCCTCCCGATTTACCGCTCGATTTGCAGAGCAGTTTGGTGGTGTTGTTCCACAAGTATCAGTCTCAATGGAAGGATGAAGTAGCCCGAGAACAGCTGCGTTCATTGCCAAGGACTAGTGTTTCGTATCAGGTCAAGACAAGTGTGCCGCCATCTTTCACGACTTTGGGTAGCTCATGCTCATTTAGCGATTTTGGAGCTTCATCAACACCGATTGTTACTGGGACCAATGCGTCTCGGCTCACTCCCATGTCTCCTCCAATTCTTCAGGTGGGAATTCTACCTCGCCTAAAGTCAATGACTTGGACCATGGAGAACTGTAACTCAGGGCCGGCTAATAGAGTGGCTGTCATCAATCTTAAGTTGCAAGATTATACCAAATCTCCTTTAGATGAAATCGAGGTGAAGTTTCAACTGACTAGGGACACTCTTGAAGCGATGCTGAGATCATTGACTTACATCAAGGAACAACTCTCAAGCATGGTTGGGACTATTTCTGGGCCATCACAAAAGAAACAAAAACAATCGGATCATTTGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMM_domain

Protein Analysis

290

Amino Acids

32.75

Weight (kDa)

8.91

Isoelectric Point (pI)

62.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 102
AasI GACNNNNNNGTC 1 cut(s) 559
Acc36I ACCTGC 1 cut(s) 102
AccBSI CCGCTC 1 cut(s) 346
AciI CCGC 2 cut(s) 344, 476
AclWI GGATC 1 cut(s) 864
AcsI RAATTY 1 cut(s) 603
AcuI CTGAAG 1 cut(s) 578
AfaI GTAC 1 cut(s) 291
AflII CTTAAG 1 cut(s) 686
AgeI ACCGGT 1 cut(s) 176
AgsI TTSAA 3 cut(s) 322, 740, 761
AhlI ACTAGT 1 cut(s) 443
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 6 cut(s) 6, 109, 325, 424, 501, 527
AluI AGCT 6 cut(s) 6, 109, 325, 424, 501, 527
Alw26I GTCTC 5 cut(s) 14, 185, 396, 567, 585
AlwI GGATC 1 cut(s) 864
Ama87I CYCGRG 1 cut(s) 414
AoxI GGCC 2 cut(s) 656, 827
ApeKI GCWGC 3 cut(s) 28, 31, 424
ApoI RAATTY 1 cut(s) 603
ArsI GACNNNNNNTTYG 2 cut(s) 433, 465
AsiGI ACCGGT 1 cut(s) 176
Asp700I GAANNNNTTC 1 cut(s) 326
AspS9I GGNCC 4 cut(s) 552, 633, 656, 827
AsuHPI GGTGA 2 cut(s) 320, 742
AvaI CYCGRG 1 cut(s) 414
AvaII GGWCC 2 cut(s) 552, 633
BbvI GCAGC 3 cut(s) 40, 43, 411
BccI CCATC 3 cut(s) 255, 487, 838
BciT130I CCWGG 1 cut(s) 169
BcoDI GTCTC 5 cut(s) 14, 185, 396, 567, 585
BcuI ACTAGT 1 cut(s) 443
BfaI CTAG 2 cut(s) 444, 747
BfrI CTTAAG 1 cut(s) 686
BfuAI ACCTGC 1 cut(s) 102
BisI GCNGC 4 cut(s) 29, 32, 425, 476
BlsI GCNGC 4 cut(s) 30, 33, 426, 477
Bme1390I CCNGG 1 cut(s) 169
Bme18I GGWCC 2 cut(s) 552, 633
BmeT110I CYCGRG 1 cut(s) 414
BmgT120I GGNCC 4 cut(s) 552, 633, 656, 827
BmiI GGNNCC 1 cut(s) 553
BmrFI CCNGG 1 cut(s) 169
BmrI ACTGGG 1 cut(s) 558
BmsI GCATC 1 cut(s) 756
BmuI ACTGGG 1 cut(s) 558
BpuEI CTTGAG 1 cut(s) 787
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 2 cut(s) 437, 636
BsaWI WCCGGW 1 cut(s) 176
BsaXI ACNNNNNCTCC 2 cut(s) 694, 724
Bse118I RCCGGY 2 cut(s) 176, 658
Bse1I ACTGG 2 cut(s) 310, 553
Bse3DI GCAATG 1 cut(s) 431
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 2 cut(s) 437, 636
BseGI GGATG 2 cut(s) 247, 409
BseMI GCAATG 1 cut(s) 431
BseMII CTCAG 3 cut(s) 36, 666, 761
BseNI ACTGG 2 cut(s) 310, 553
BseRI GAGGAG 2 cut(s) 209, 573
BseXI GCAGC 3 cut(s) 40, 43, 411
BsgI GTGCAG 1 cut(s) 74
Bsh1285I CGRYCG 1 cut(s) 272
BshFI GGCC 2 cut(s) 658, 829
BshTI ACCGGT 1 cut(s) 176
BsiEI CGRYCG 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 414
BsiSI CCGG 2 cut(s) 177, 659
BslFI GGGAC 4 cut(s) 187, 565, 764, 829
BsmAI GTCTC 5 cut(s) 14, 185, 396, 567, 585
BsmBI CGTCTC 1 cut(s) 567
BsmFI GGGAC 4 cut(s) 187, 565, 764, 829
BsnI GGCC 2 cut(s) 658, 829
Bso31I GGTCTC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 414
Bsp143I GATC 3 cut(s) 269, 773, 856
Bsp19I CCATGG 1 cut(s) 636
BspACI CCGC 2 cut(s) 344, 476
BspANI GGCC 2 cut(s) 658, 829
BspCNI CTCAG 3 cut(s) 35, 665, 762
BspLI GGNNCC 1 cut(s) 553
BspMI ACCTGC 1 cut(s) 102
BspPI GGATC 1 cut(s) 864
BspQI GCTCTTC 1 cut(s) 332
BspTI CTTAAG 1 cut(s) 686
BspTNI GGTCTC 1 cut(s) 185
BsrBI CCGCTC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 431
BsrFI RCCGGY 2 cut(s) 176, 658
BsrI ACTGG 2 cut(s) 310, 553
BssAI RCCGGY 2 cut(s) 176, 658
BssECI CCNNGG 2 cut(s) 437, 636
BssMI GATC 3 cut(s) 269, 773, 856
BssT1I CCWWGG 2 cut(s) 437, 636
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 647
Bst6I CTCTTC 2 cut(s) 17, 332
BstAFI CTTAAG 1 cut(s) 686
BstC8I GCNNGC 2 cut(s) 262, 660
BstDEI CTNAG 3 cut(s) 22, 652, 770
BstDSI CCRYGG 1 cut(s) 636
BstF5I GGATG 2 cut(s) 247, 409
BstKTI GATC 3 cut(s) 272, 776, 859
BstMAI GTCTC 5 cut(s) 14, 185, 396, 567, 585
BstMBI GATC 3 cut(s) 269, 773, 856
BstMCI CGRYCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 3 cut(s) 352, 433, 513
BstNI CCWGG 1 cut(s) 169
BstNSI RCATGY 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 167
BstV1I GCAGC 3 cut(s) 40, 43, 411
BsuRI GGCC 2 cut(s) 658, 829
BtgI CCRYGG 1 cut(s) 636
BtgZI GCGATG 1 cut(s) 779
BtsCI GGATG 2 cut(s) 247, 409
BtsI GCAGTG 1 cut(s) 86
BtsIMutI CAGTG 2 cut(s) 86, 303
BveI ACCTGC 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 262, 660
Cfr10I RCCGGY 2 cut(s) 176, 658
Cfr13I GGNCC 4 cut(s) 552, 633, 656, 827
CseI GACGC 1 cut(s) 549
Csp6I GTAC 1 cut(s) 290
CspAI ACCGGT 1 cut(s) 176
CviAII CATG 7 cut(s) 76, 261, 293, 504, 577, 637, 808
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 3 cut(s) 22, 652, 770
DpnI GATC 3 cut(s) 271, 775, 858
DpnII GATC 3 cut(s) 269, 773, 856
DrdI GACNNNNNNGTC 1 cut(s) 559
DseDI GACNNNNNNGTC 1 cut(s) 559
Eam1104I CTCTTC 2 cut(s) 17, 332
EarI CTCTTC 2 cut(s) 17, 332
Eco130I CCWWGG 2 cut(s) 437, 636
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 2 cut(s) 552, 633
Eco57I CTGAAG 1 cut(s) 578
Eco88I CYCGRG 1 cut(s) 414
EcoRI GAATTC 1 cut(s) 603
EcoRII CCWGG 1 cut(s) 167
EcoT14I CCWWGG 2 cut(s) 437, 636
ErhI CCWWGG 2 cut(s) 437, 636
Esp3I CGTCTC 1 cut(s) 567
FaeI CATG 7 cut(s) 79, 264, 296, 507, 580, 640, 811
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FaqI GGGAC 4 cut(s) 187, 565, 764, 829
FatI CATG 7 cut(s) 75, 260, 292, 503, 576, 636, 807
Fnu4HI GCNGC 4 cut(s) 29, 32, 425, 476
FokI GGATG 2 cut(s) 234, 416
Fsp4HI GCNGC 4 cut(s) 29, 32, 425, 476
FspBI CTAG 2 cut(s) 444, 747
GluI GCNGC 4 cut(s) 29, 32, 425, 476
HaeIII GGCC 2 cut(s) 658, 829
HapII CCGG 2 cut(s) 177, 659
HgaI GACGC 1 cut(s) 549
Hin1II CATG 7 cut(s) 79, 264, 296, 507, 580, 640, 811
HpaII CCGG 2 cut(s) 177, 659
HphI GGTGA 2 cut(s) 320, 742
Hpy188I TCNGA 4 cut(s) 25, 127, 281, 856
Hpy188III TCNNGA 5 cut(s) 160, 335, 463, 487, 758
HpyAV CCTTC 3 cut(s) 240, 275, 394
HpyCH4III ACNGT 1 cut(s) 647
HpyCH4V TGCA 6 cut(s) 91, 97, 103, 153, 355, 694
HpyF10VI GCNNNNNNNGC 3 cut(s) 352, 433, 513
HpyF3I CTNAG 3 cut(s) 22, 652, 770
Hsp92II CATG 7 cut(s) 79, 264, 296, 507, 580, 640, 811
KroI GCCGGC 1 cut(s) 658
KroNI GCCGGC 1 cut(s) 660
Kzo9I GATC 3 cut(s) 269, 773, 856
LguI GCTCTTC 1 cut(s) 332
LmnI GCTCC 1 cut(s) 524
Lsp1109I GCAGC 3 cut(s) 40, 43, 411
LweI GCATC 1 cut(s) 756
MaeI CTAG 2 cut(s) 444, 747
MaeIII GTNAC 2 cut(s) 544, 647
MalI GATC 3 cut(s) 271, 775, 858
MbiI CCGCTC 1 cut(s) 346
MboI GATC 3 cut(s) 269, 773, 856
MboII GAAGA 4 cut(s) 4, 7, 319, 584
MfeI CAATTG 2 cut(s) 98, 143
MluCI AATT 4 cut(s) 98, 143, 588, 603
MnlI CCTC 8 cut(s) 64, 73, 121, 230, 342, 594, 621, 721
MroNI GCCGGC 1 cut(s) 658
MroXI GAANNNNTTC 1 cut(s) 326
MseI TTAA 1 cut(s) 687
MslI CAYNNNNRTG 1 cut(s) 575
MspA1I CMGCKG 1 cut(s) 424
MspCI CTTAAG 1 cut(s) 686
MspI CCGG 2 cut(s) 177, 659
MspR9I CCNGG 1 cut(s) 169
MunI CAATTG 2 cut(s) 98, 143
MvaI CCWGG 1 cut(s) 169
MwoI GCNNNNNNNGC 3 cut(s) 352, 433, 513
NaeI GCCGGC 1 cut(s) 660
NcoI CCATGG 1 cut(s) 636
NdeII GATC 3 cut(s) 269, 773, 856
NgoMIV GCCGGC 1 cut(s) 658
NlaIII CATG 7 cut(s) 79, 264, 296, 507, 580, 640, 811
NlaIV GGNNCC 1 cut(s) 553
NmeAIII GCCGAG 1 cut(s) 544
NspI RCATGY 1 cut(s) 264
PaeI GCATGC 1 cut(s) 264
PaqCI CACCTGC 1 cut(s) 102
PciSI GCTCTTC 1 cut(s) 332
PdiI GCCGGC 1 cut(s) 660
PdmI GAANNNNTTC 1 cut(s) 326
PinAI ACCGGT 1 cut(s) 176
PkrI GCNGC 4 cut(s) 30, 33, 426, 477
Ple19I CGATCG 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 553
PspPI GGNCC 4 cut(s) 552, 633, 656, 827
PvuI CGATCG 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 424
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 575
SapI GCTCTTC 1 cut(s) 332
SaqAI TTAA 1 cut(s) 687
SatI GCNGC 4 cut(s) 29, 32, 425, 476
Sau3AI GATC 3 cut(s) 269, 773, 856
Sau96I GGNCC 4 cut(s) 552, 633, 656, 827
ScrFI CCNGG 1 cut(s) 169
SfaNI GCATC 1 cut(s) 756
SinI GGWCC 2 cut(s) 552, 633
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 2 cut(s) 686, 802
SmoI CTYRAG 2 cut(s) 686, 802
SpeI ACTAGT 1 cut(s) 443
SphI GCATGC 1 cut(s) 264
Sse9I AATT 4 cut(s) 98, 143, 588, 603
SsiI CCGC 2 cut(s) 344, 476
SspMI CTAG 2 cut(s) 444, 747
StyD4I CCNGG 1 cut(s) 167
StyI CCWWGG 2 cut(s) 437, 636
TaaI ACNGT 1 cut(s) 647
TaqI TCGA 3 cut(s) 268, 348, 726
TasI AATT 4 cut(s) 98, 143, 588, 603
TauI GCSGC 1 cut(s) 478
Tru1I TTAA 1 cut(s) 687
Tru9I TTAA 1 cut(s) 687
TscAI CASTG 2 cut(s) 93, 310
TseI GCWGC 3 cut(s) 28, 31, 424
TspDTI ATGAA 5 cut(s) 309, 420, 420, 519, 735
TspRI CASTG 2 cut(s) 93, 310
Vha464I CTTAAG 1 cut(s) 686
VpaK11BI GGWCC 2 cut(s) 552, 633
XapI RAATTY 1 cut(s) 603
XceI RCATGY 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 2 cut(s) 444, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.