Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008834

Physical Location & Seq

Genomic Coordinates Reverse (-)

45053481 .. 45056215

Gene Structure 2735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45791

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGATGTGGTGGAAGACACGCTTTACCTGCAATTGCATAAGTTATCAGCCATAAATTCCGAGGAAGCACTGCACCAATTGCTTTCCACTCTCTGGAAAACAAGGAAAACCGGTCTCCGCGACAAGTCCCACTTGCAGTCTCTCCTCAATCTACAATCACTCTCCGACCTCGACCCTGTTTTGGCATGCCTTCGTTCGCTCATCAGAAAATGGGTACATGAAAACTTGACTGCCGACGACCTTCTGAAGCTCTTTCCACCCGATTTGCCCCTCGATTTGCAGAGCATTTTGGTGTTGTCCCTTCAAAAGTTTGAGTCTCAATGGAAGGACGAAATAGCCAGAGAGCAGGTTAAGACAACCTCTTTGGGTATGTCGCACTCATTACATAATGATCATGTTGCTCAATTAAGCCGACATGAGTTTGCGTCAGAGATCACTCCCGTGTCTCCTTGCAACTTGGGAACTCTTCCTCGCCTAAAGTCAATGACTTGGACCATGGAGAACTGTAACTCCGGATCAGCTAACAAAGTGGCCATCATTAATCTCAAGCTGCAAGATTATACCAAATCTAGTGCAGATGAAATCGAGGTGAAGTTCCAACTGACTAGGGACACTCTTGAAGCAATGTTGAGGTCATTGACCTACATCAGAGAACAACTCTCAAGCGTGGTTGGGGCTGCTTCTGGGCCATCACAGAAGAAGCAAAAGCAGTCAGATCATGTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMM_domain

Protein Analysis

242

Amino Acids

27.31

Weight (kDa)

6.5

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008834)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29410 FvH4_1g29410 FvH4_1g29410 FvH4_1g29410 FvH4_1g29410
malus_domestica	MD14G1012800.v1.1
prunus_persica	Prupe.1G058500_v2.0.a1 Prupe.7G025800_v2.0.a1 Prupe.7G025800_v2.0.a1 Prupe.7G025800_v2.0.a1
pyrus_communis	pycom14g01080
rosa_chinensis	RchiOBHm_Chr3g0495501
rosa_laevigata	RLG00000022615
rosa_multiflora	Rmu_sc0004755.1_g000025 Rmu_sc0006163.1_g000015
rosa_roxburghii	Rroxscaffold_6G00390480
rosa_rugosa	Rorug03G0273800 Rorug03G0273900
rosa_samantha	Rh3AG321500 Rh3BG356800 Rh3CG353600 Rh3DG356100
rosa_wichuraiana	Rw3G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	36, 337
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccII	CGCG	1 cut(s)	120
AccIII	TCCGGA	1 cut(s)	512
AciI	CCGC	1 cut(s)	118
AclWI	GGATC	1 cut(s)	523
AcoI	YGGCCR	1 cut(s)	531
AcsI	RAATTY	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	93, 181
AgeI	ACCGGT	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	305, 620
AleI	CACNNNNGTG	1 cut(s)	440
AloI	GAACNNNNNNTCC	2 cut(s)	494, 526
AluBI	AGCT	3 cut(s)	250, 521, 550
AluI	AGCT	3 cut(s)	250, 521, 550
Alw26I	GTCTC	4 cut(s)	119, 144, 321, 450
AlwI	GGATC	1 cut(s)	523
Aor13HI	TCCGGA	1 cut(s)	512
AoxI	GGCC	2 cut(s)	531, 686
ApeKI	GCWGC	2 cut(s)	550, 677
ApoI	RAATTY	1 cut(s)	55
ArsI	GACNNNNNNTTYG	2 cut(s)	346, 378
AseI	ATTAAT	1 cut(s)	540
AsiGI	ACCGGT	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	492, 686
AsuHPI	GGTGA	1 cut(s)	601
AvaII	GGWCC	1 cut(s)	492
BalI	TGGCCA	1 cut(s)	533
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	537, 664
BccI	CCATC	2 cut(s)	542, 697
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	4 cut(s)	119, 144, 321, 450
BfaI	CTAG	2 cut(s)	570, 606
BfuAI	ACCTGC	2 cut(s)	36, 337
BisI	GCNGC	2 cut(s)	551, 678
BlsI	GCNGC	2 cut(s)	552, 679
Bme18I	GGWCC	1 cut(s)	492
BmgT120I	GGNCC	2 cut(s)	492, 686
BpiI	GAAGAC	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	642, 674
BpuEI	CTTGAG	2 cut(s)	530, 646
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	60, 495
BsaWI	WCCGGW	2 cut(s)	110, 512
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 181
Bse118I	RCCGGY	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	630
BseAI	TCCGGA	1 cut(s)	512
BseDI	CCNNGG	2 cut(s)	60, 495
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	93, 181
BseMI	GCAATG	1 cut(s)	630
BseRI	GAGGAG	1 cut(s)	134
BseXI	GCAGC	2 cut(s)	537, 664
BsgI	GTGCAG	2 cut(s)	56, 594
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	533, 688
BshTI	ACCGGT	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	111, 513
BslFI	GGGAC	3 cut(s)	112, 283, 623
BslI	CCNNNNNNNGG	2 cut(s)	93, 181
BsmAI	GTCTC	4 cut(s)	119, 144, 321, 450
BsmFI	GGGAC	3 cut(s)	112, 283, 623
BsnI	GGCC	2 cut(s)	533, 688
Bso31I	GGTCTC	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	512
Bsp143I	GATC	4 cut(s)	391, 432, 515, 715
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	1 cut(s)	118
BspANI	GGCC	2 cut(s)	533, 688
BspEI	TCCGGA	1 cut(s)	512
BspFNI	CGCG	1 cut(s)	120
BspMI	ACCTGC	2 cut(s)	36, 337
BspPI	GGATC	1 cut(s)	523
BspTNI	GGTCTC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	630
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	60, 495
BssMI	GATC	4 cut(s)	391, 432, 515, 715
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	506
Bst6I	CTCTTC	1 cut(s)	471
BstAPI	GCANNNNNTGC	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	187
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	4 cut(s)	394, 435, 518, 718
BstMAI	GTCTC	4 cut(s)	119, 144, 321, 450
BstMBI	GATC	4 cut(s)	391, 432, 515, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 79
BstNSI	RCATGY	1 cut(s)	189
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	537, 664
BstV2I	GAAGAC	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	533, 688
BtgI	CCRYGG	1 cut(s)	495
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	68
BveI	ACCTGC	2 cut(s)	36, 337
Cac8I	GCNNGC	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	492, 686
CseI	GACGC	1 cut(s)	414
Csp6I	GTAC	1 cut(s)	215
CspAI	ACCGGT	1 cut(s)	110
CspCI	CAANNNNNGTGG	2 cut(s)	246, 281
CviAII	CATG	6 cut(s)	186, 218, 395, 416, 496, 719
CviJI	RGCY	9 cut(s)	50, 250, 338, 411, 521, 533, 550, 677, 688
CviKI_1	RGCY	9 cut(s)	50, 250, 338, 411, 521, 533, 550, 677, 688
CviQI	GTAC	1 cut(s)	215
DpnI	GATC	4 cut(s)	393, 434, 517, 717
DpnII	GATC	4 cut(s)	391, 432, 515, 715
EaeI	YGGCCR	1 cut(s)	531
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	495
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	492
Eco57I	CTGAAG	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	6 cut(s)	189, 221, 398, 419, 499, 722
FalI	AAGNNNNNCTT	3 cut(s)	38, 116, 148
FaqI	GGGAC	3 cut(s)	112, 283, 623
FatI	CATG	6 cut(s)	185, 217, 394, 415, 495, 718
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	2 cut(s)	551, 678
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	551, 678
FspBI	CTAG	2 cut(s)	570, 606
GluI	GCNGC	2 cut(s)	551, 678
HaeIII	GGCC	2 cut(s)	533, 688
HapII	CCGG	2 cut(s)	111, 513
HgaI	GACGC	1 cut(s)	414
Hin1II	CATG	6 cut(s)	189, 221, 398, 419, 499, 722
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	2 cut(s)	111, 513
HphI	GGTGA	1 cut(s)	601
Hpy188I	TCNGA	7 cut(s)	61, 166, 206, 246, 430, 650, 715
Hpy188III	TCNNGA	3 cut(s)	94, 513, 617
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	4 cut(s)	200, 251, 311, 319
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4V	TGCA	8 cut(s)	31, 37, 73, 136, 280, 453, 553, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 79
Hsp92II	CATG	6 cut(s)	189, 221, 398, 419, 499, 722
Kpn2I	TCCGGA	1 cut(s)	512
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	391, 432, 515, 715
LpnPI	CCDG	8 cut(s)	41, 79, 124, 189, 332, 352, 526, 669
Lsp1109I	GCAGC	2 cut(s)	537, 664
MaeI	CTAG	2 cut(s)	570, 606
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	4 cut(s)	393, 434, 517, 717
MboI	GATC	4 cut(s)	391, 432, 515, 715
MboII	GAAGA	3 cut(s)	26, 458, 709
MfeI	CAATTG	2 cut(s)	32, 77
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	4 cut(s)	32, 55, 77, 404
MluNI	TGGCCA	1 cut(s)	533
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	2 cut(s)	189, 622
MnlI	CCTC	8 cut(s)	55, 155, 179, 281, 370, 480, 580, 624
Mox20I	TGGCCA	1 cut(s)	533
MroI	TCCGGA	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	533
MseI	TTAA	3 cut(s)	351, 407, 540
MslI	CAYNNNNRTG	2 cut(s)	290, 440
Msp20I	TGGCCA	1 cut(s)	533
MspI	CCGG	2 cut(s)	111, 513
MunI	CAATTG	2 cut(s)	32, 77
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	28, 79
NcoI	CCATGG	1 cut(s)	495
NdeII	GATC	4 cut(s)	391, 432, 515, 715
NlaIII	CATG	6 cut(s)	189, 221, 398, 419, 499, 722
NspI	RCATGY	1 cut(s)	189
OliI	CACNNNNGTG	1 cut(s)	440
PaeI	GCATGC	1 cut(s)	189
PflMI	CCANNNNNTGG	1 cut(s)	93
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	2 cut(s)	552, 679
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	540
PspPI	GGNCC	2 cut(s)	492, 686
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
RseI	CAYNNNNRTG	2 cut(s)	290, 440
SaqAI	TTAA	3 cut(s)	351, 407, 540
SatI	GCNGC	2 cut(s)	551, 678
Sau3AI	GATC	4 cut(s)	391, 432, 515, 715
Sau96I	GGNCC	2 cut(s)	492, 686
SchI	GAGTC	1 cut(s)	323
SinI	GGWCC	1 cut(s)	492
SmiMI	CAYNNNNRTG	2 cut(s)	290, 440
SmlI	CTYRAG	2 cut(s)	545, 661
SmoI	CTYRAG	2 cut(s)	545, 661
SphI	GCATGC	1 cut(s)	189
Sse9I	AATT	4 cut(s)	32, 55, 77, 404
SsiI	CCGC	1 cut(s)	118
SspMI	CTAG	2 cut(s)	570, 606
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	506
TaqI	TCGA	3 cut(s)	171, 273, 585
TasI	AATT	4 cut(s)	32, 55, 77, 404
Tru1I	TTAA	3 cut(s)	351, 407, 540
Tru9I	TTAA	3 cut(s)	351, 407, 540
TscAI	CASTG	1 cut(s)	75
TseI	GCWGC	2 cut(s)	550, 677
TspDTI	ATGAA	2 cut(s)	234, 594
TspRI	CASTG	1 cut(s)	75
Van91I	CCANNNNNTGG	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	492
VspI	ATTAAT	1 cut(s)	540
XapI	RAATTY	1 cut(s)	55
XceI	RCATGY	1 cut(s)	189
XspI	CTAG	2 cut(s)	570, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.