Rorug03G0273900

COMM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0008834
Physical Location & Seq
Reverse (-)
27075709 .. 27077982
2274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0273900.1

Sequence Viewer

Length: 789 bp
ATGCTTGGGGTCGAACACGAACGCCTTCAGGACATATCTTCTAACCAAGCCAGTGCTGATGATTGGGTCCAAAATAATGTGGTAACCTATGGAGATGTCAATTTCAAATACATTGCAGTTGGGAATGAAATAGAATCAGGTCCATTTGCACAATTTGTTGGCCCTGCCATGGAAAAAATTCAAAATGCAATTTCTAAGGCCGGTCTTGCGAACAAAATCAAAGTCTCCACAGCAGTTCATCCTATAGTCCTCCAAGAATCCTCCCCTCCATCAAAAGGATCATTCAAGCAGGATTACCGAGCCTTTCTTGATCCTGTCATTGGTTTCCTTGTGGGAAACCAATCTCCGCTGCTTGTTAATATGTACTCATACTTTAGTTACTTTGACAACCGAGAGATTAACCTTCAATATGCTCTTTTCACATATCCATCAGTTCTGGTTCAAGATGGACAACTTGGCTACCAAAACTTGTTTGATGCAATTCTGGATGCACATTACTCCGCTTTAGAGAAGGCCGGAGGCAGTTCTTTGAAAATTGTTGTATCGGAGACGGGTTGGCCTTCCGCTGGTGGTGATGGCGAAGTGACAACAATAGAGAATGCGAGAATCTACAACTCACAAGTGATTAATCATGTCAAGGGTGGTACTCCGAAGAAACCTGAAGGTCCTATAGAAACTTACATATTTGCCATGTTCAATGAGAATGAGAAAACTGGAGCAGAGACTGAGAAGAATTTCGGGCTCTTTTTACCAACCGGAGATCCTGTTTATCCTATCAATTTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMM_domain

Protein Analysis

262

Amino Acids

28.75

Weight (kDa)

4.79

Isoelectric Point (pI)

36.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 2 - 261 8.2e-83 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 347, 501, 564
AclWI GGATC 3 cut(s) 286, 305, 755
AcsI RAATTY 2 cut(s) 177, 733
AcuI CTGAAG 2 cut(s) 11, 681
AfaI GTAC 2 cut(s) 365, 646
AfiI CCNNNNNNNGG 4 cut(s) 169, 275, 320, 566
AgsI TTSAA 8 cut(s) 106, 182, 286, 407, 443, 532, 697, 784
Alw26I GTCTC 3 cut(s) 229, 542, 716
AlwI GGATC 3 cut(s) 286, 305, 755
AlwNI CAGNNNCTG 1 cut(s) 725
AoxI GGCC 4 cut(s) 160, 198, 513, 557
ApeKI GCWGC 1 cut(s) 349
ApoI RAATTY 2 cut(s) 177, 733
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AseI ATTAAT 1 cut(s) 627
Asp700I GAANNNNTTC 3 cut(s) 24, 177, 734
AspS9I GGNCC 4 cut(s) 67, 140, 161, 665
AsuHPI GGTGA 1 cut(s) 584
AvaII GGWCC 3 cut(s) 67, 140, 665
BanII GRGCYC 1 cut(s) 744
BbvI GCAGC 1 cut(s) 336
BccI CCATC 4 cut(s) 277, 436, 440, 569
BcoDI GTCTC 3 cut(s) 229, 542, 716
BfmI CTRYAG 2 cut(s) 243, 669
BisI GCNGC 1 cut(s) 350
BlsI GCNGC 1 cut(s) 351
Bme18I GGWCC 3 cut(s) 67, 140, 665
BmgT120I GGNCC 4 cut(s) 67, 140, 161, 665
BmiI GGNNCC 1 cut(s) 68
BmsI GCATC 2 cut(s) 466, 478
BpmI CTGGAG 1 cut(s) 735
BsaJI CCNNGG 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 755
BsaXI ACNNNNNCTCC 2 cut(s) 750, 780
Bsc4I CCNNNNNNNGG 4 cut(s) 169, 275, 320, 566
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 2 cut(s) 51, 718
Bse3DI GCAATG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 2 cut(s) 238, 493
BseLI CCNNNNNNNGG 4 cut(s) 169, 275, 320, 566
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 717
BseNI ACTGG 2 cut(s) 51, 718
BseXI GCAGC 1 cut(s) 336
BshFI GGCC 4 cut(s) 162, 200, 515, 559
BsiSI CCGG 3 cut(s) 201, 516, 756
BslI CCNNNNNNNGG 4 cut(s) 169, 275, 320, 566
BsmAI GTCTC 3 cut(s) 229, 542, 716
BsmBI CGTCTC 1 cut(s) 542
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 4 cut(s) 162, 200, 515, 559
Bsp1286I GDGCHC 1 cut(s) 744
Bsp143I GATC 3 cut(s) 278, 310, 760
Bsp19I CCATGG 1 cut(s) 168
BspACI CCGC 3 cut(s) 347, 501, 564
BspANI GGCC 4 cut(s) 162, 200, 515, 559
BspCNI CTCAG 1 cut(s) 718
BspLI GGNNCC 1 cut(s) 68
BspPI GGATC 3 cut(s) 286, 305, 755
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 2 cut(s) 51, 718
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 3 cut(s) 278, 310, 760
BssT1I CCWWGG 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 195, 726
BstDSI CCRYGG 1 cut(s) 168
BstEII GGTNACC 1 cut(s) 82
BstF5I GGATG 2 cut(s) 238, 493
BstKTI GATC 3 cut(s) 281, 313, 763
BstMAI GTCTC 3 cut(s) 229, 542, 716
BstMBI GATC 3 cut(s) 278, 310, 760
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstPI GGTNACC 1 cut(s) 82
BstSFI CTRYAG 2 cut(s) 243, 669
BstV1I GCAGC 1 cut(s) 336
BstX2I RGATCY 1 cut(s) 760
BstYI RGATCY 1 cut(s) 760
BsuRI GGCC 4 cut(s) 162, 200, 515, 559
BtgI CCRYGG 1 cut(s) 168
BtsCI GGATG 2 cut(s) 238, 493
BtsIMutI CAGTG 1 cut(s) 58
CaiI CAGNNNCTG 1 cut(s) 725
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 4 cut(s) 67, 140, 161, 665
Csp6I GTAC 2 cut(s) 364, 645
CviAII CATG 3 cut(s) 169, 632, 691
CviJI RGCY 8 cut(s) 50, 162, 200, 302, 459, 515, 559, 742
CviKI_1 RGCY 8 cut(s) 50, 162, 200, 302, 459, 515, 559, 742
CviQI GTAC 2 cut(s) 364, 645
DdeI CTNAG 2 cut(s) 195, 726
DpnI GATC 3 cut(s) 280, 312, 762
DpnII GATC 3 cut(s) 278, 310, 760
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 744
Eco47I GGWCC 3 cut(s) 67, 140, 665
Eco57I CTGAAG 2 cut(s) 11, 681
Eco91I GGTNACC 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 665
EcoO65I GGTNACC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 744
ErhI CCWWGG 1 cut(s) 168
Esp3I CGTCTC 1 cut(s) 542
FaeI CATG 3 cut(s) 172, 635, 694
FatI CATG 3 cut(s) 168, 631, 690
Fnu4HI GCNGC 1 cut(s) 350
FokI GGATG 2 cut(s) 225, 500
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 1 cut(s) 350
GluI GCNGC 1 cut(s) 350
GsuI CTGGAG 1 cut(s) 735
HaeIII GGCC 4 cut(s) 162, 200, 515, 559
HapII CCGG 3 cut(s) 201, 516, 756
Hin1II CATG 3 cut(s) 172, 635, 694
HinfI GANTC 3 cut(s) 134, 257, 606
HpaII CCGG 3 cut(s) 201, 516, 756
HphI GGTGA 1 cut(s) 584
Hpy188I TCNGA 2 cut(s) 547, 651
Hpy188III TCNNGA 4 cut(s) 29, 308, 443, 485
HpyAV CCTTC 5 cut(s) 35, 413, 505, 570, 656
HpyCH4V TGCA 5 cut(s) 116, 149, 188, 479, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 2 cut(s) 195, 726
Hsp92II CATG 3 cut(s) 172, 635, 694
Kzo9I GATC 3 cut(s) 278, 310, 760
LmnI GCTCC 1 cut(s) 716
Lsp1109I GCAGC 1 cut(s) 336
LweI GCATC 2 cut(s) 466, 478
MaeIII GTNAC 3 cut(s) 82, 377, 583
MalI GATC 3 cut(s) 280, 312, 762
MboI GATC 3 cut(s) 278, 310, 760
MboII GAAGA 3 cut(s) 30, 664, 742
MflI RGATCY 1 cut(s) 760
MhlI GDGCHC 1 cut(s) 744
MluCI AATT 8 cut(s) 100, 152, 177, 189, 480, 534, 733, 778
MnlI CCTC 4 cut(s) 260, 271, 276, 512
MroXI GAANNNNTTC 3 cut(s) 24, 177, 734
MseI TTAA 3 cut(s) 357, 399, 627
MspA1I CMGCKG 2 cut(s) 349, 566
MspI CCGG 3 cut(s) 201, 516, 756
Mva1269I GAATGC 1 cut(s) 604
MwoI GCNNNNNNNGC 1 cut(s) 206
NcoI CCATGG 1 cut(s) 168
NdeII GATC 3 cut(s) 278, 310, 760
NlaIII CATG 3 cut(s) 172, 635, 694
NlaIV GGNNCC 1 cut(s) 68
NmuCI GTSAC 1 cut(s) 583
PctI GAATGC 1 cut(s) 604
PdmI GAANNNNTTC 3 cut(s) 24, 177, 734
PfeI GAWTC 3 cut(s) 134, 257, 606
PkrI GCNGC 1 cut(s) 351
PpuMI RGGWCCY 1 cut(s) 665
PshBI ATTAAT 1 cut(s) 627
Psp5II RGGWCCY 1 cut(s) 665
PspEI GGTNACC 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 68
PspPI GGNCC 4 cut(s) 67, 140, 161, 665
PspPPI RGGWCCY 1 cut(s) 665
PstNI CAGNNNCTG 1 cut(s) 725
PsuI RGATCY 1 cut(s) 760
RsaI GTAC 2 cut(s) 365, 646
RsaNI GTAC 2 cut(s) 364, 645
SaqAI TTAA 3 cut(s) 357, 399, 627
SatI GCNGC 1 cut(s) 350
Sau3AI GATC 3 cut(s) 278, 310, 760
Sau96I GGNCC 4 cut(s) 67, 140, 161, 665
SduI GDGCHC 1 cut(s) 744
SetI ASST 5 cut(s) 89, 142, 405, 661, 667
SfaNI GCATC 2 cut(s) 466, 478
SfcI CTRYAG 2 cut(s) 243, 669
SinI GGWCC 3 cut(s) 67, 140, 665
Sse9I AATT 8 cut(s) 100, 152, 177, 189, 480, 534, 733, 778
SsiI CCGC 3 cut(s) 347, 501, 564
StyI CCWWGG 1 cut(s) 168
TaqI TCGA 1 cut(s) 12
TasI AATT 8 cut(s) 100, 152, 177, 189, 480, 534, 733, 778
TatI WGTACW 1 cut(s) 363
TfiI GAWTC 3 cut(s) 134, 257, 606
Tru1I TTAA 3 cut(s) 357, 399, 627
Tru9I TTAA 3 cut(s) 357, 399, 627
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 583
TseI GCWGC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 583
TspDTI ATGAA 2 cut(s) 141, 227
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 3 cut(s) 67, 140, 665
VspI ATTAAT 1 cut(s) 627
XapI RAATTY 2 cut(s) 177, 733
XmnI GAANNNNTTC 3 cut(s) 24, 177, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.