Rroxscaffold_6G00390480

COMM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0008834
Physical Location & Seq
Forward (+)
5568727 .. 5571372
2646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390480.1

Sequence Viewer

Length: 714 bp
ATGCTTCACTCAATACGCCAAGCTGATAAAAGGTTTGTTTCACACACCAATGGCAGCCTGAAGTTATGGGAAAAAATCAAGGGCAAAATCGGGGAGGAAGACACGCTTTACCTGCAATTGCATAAGTTATCAGCCATAAAATCGGAGGAAGCACTGCACCAATTGCTTTCCACTCTCTGGAAAACAAGGAAAACCGGTCTCCGCGACAAGTCCCACTTGCAGTCTCTCCTCAATCTACAATCACTCTCCGATCTCGACCCTGTTTTGGCATGCCTTCGTTCGCTCATTAGAAAATGGGTACATGAAAACTTGACTGCCGACGACCTTCTGAAGCTCTTTCCACCCGATTTGCCCCTCGATTTGCAGAGCATTTTGGTGTTGTCCCTTCAAAAGTTTGAGTCTCAATGGAAGGACGAAATAGCCAGAGAGCAGGGACCTCTACCTCGCCTAAAGTCAATGACTTGGACCATGGAGAACTGTAACTCCGGATCAGCTAACAAAGTGGCCGTCATTAATCTCAAGCTGCAAGATTATACCAAATCTAGTGTAGATGAAATCGAGGTGAAGTTCCAACTGACTAGGGACACTCTTGAAGCAATGTTGAGGCATATGCATATGGTATATGCTGCCTTGGATTTTGGAAGACTTGAGATGGTTGGGGCTGCTTCTGGGCCATCACAGAAGAAGCAAAAGCAGTCAGATCATGTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMM_domain

Protein Analysis

237

Amino Acids

27.08

Weight (kDa)

8.95

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 120
AccB7I CCANNNNNTGG 1 cut(s) 177
AccII CGCG 1 cut(s) 204
AccIII TCCGGA 1 cut(s) 485
AciI CCGC 1 cut(s) 202
AclWI GGATC 1 cut(s) 496
AcoI YGGCCR 1 cut(s) 504
AcuI CTGAAG 2 cut(s) 80, 350
AfaI GTAC 1 cut(s) 300
AfiI CCNNNNNNNGG 2 cut(s) 177, 265
AgeI ACCGGT 1 cut(s) 194
AgsI TTSAA 2 cut(s) 389, 593
AloI GAACNNNNNNTCC 2 cut(s) 467, 499
AluBI AGCT 4 cut(s) 23, 334, 494, 523
AluI AGCT 4 cut(s) 23, 334, 494, 523
Alw26I GTCTC 3 cut(s) 203, 228, 405
AlwI GGATC 1 cut(s) 496
Aor13HI TCCGGA 1 cut(s) 485
AoxI GGCC 2 cut(s) 504, 671
ApeKI GCWGC 4 cut(s) 54, 523, 626, 662
ArsI GACNNNNNNTTYG 2 cut(s) 492, 524
AseI ATTAAT 1 cut(s) 513
AsiGI ACCGGT 1 cut(s) 194
AspS9I GGNCC 3 cut(s) 434, 465, 671
AsuHPI GGTGA 1 cut(s) 574
AvaII GGWCC 2 cut(s) 434, 465
BbsI GAAGAC 2 cut(s) 105, 649
BbvI GCAGC 4 cut(s) 66, 510, 613, 649
BccI CCATC 2 cut(s) 646, 682
BceAI ACGGC 1 cut(s) 491
BcoDI GTCTC 3 cut(s) 203, 228, 405
BfaI CTAG 2 cut(s) 543, 579
BfuAI ACCTGC 1 cut(s) 120
BisI GCNGC 4 cut(s) 55, 524, 627, 663
BlsI GCNGC 4 cut(s) 56, 525, 628, 664
Bme18I GGWCC 2 cut(s) 434, 465
BmgT120I GGNCC 3 cut(s) 434, 465, 671
BmiI GGNNCC 1 cut(s) 435
BpiI GAAGAC 2 cut(s) 105, 649
BpuEI CTTGAG 2 cut(s) 503, 668
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 468, 630
BsaWI WCCGGW 2 cut(s) 194, 485
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 265
Bse118I RCCGGY 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 603
BseAI TCCGGA 1 cut(s) 485
BseDI CCNNGG 2 cut(s) 468, 630
BseLI CCNNNNNNNGG 2 cut(s) 177, 265
BseMI GCAATG 1 cut(s) 603
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 4 cut(s) 66, 510, 613, 649
BsgI GTGCAG 1 cut(s) 140
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 2 cut(s) 506, 673
BshTI ACCGGT 1 cut(s) 194
BsiSI CCGG 2 cut(s) 195, 486
BslFI GGGAC 4 cut(s) 196, 367, 447, 596
BslI CCNNNNNNNGG 2 cut(s) 177, 265
BsmAI GTCTC 3 cut(s) 203, 228, 405
BsmFI GGGAC 4 cut(s) 196, 367, 447, 596
BsnI GGCC 2 cut(s) 506, 673
Bso31I GGTCTC 1 cut(s) 203
Bsp13I TCCGGA 1 cut(s) 485
Bsp143I GATC 3 cut(s) 250, 488, 700
Bsp19I CCATGG 1 cut(s) 468
BspACI CCGC 1 cut(s) 202
BspANI GGCC 2 cut(s) 506, 673
BspEI TCCGGA 1 cut(s) 485
BspFNI CGCG 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 435
BspMI ACCTGC 1 cut(s) 120
BspPI GGATC 1 cut(s) 496
BspTNI GGTCTC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 603
BsrFI RCCGGY 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 2 cut(s) 468, 630
BssMI GATC 3 cut(s) 250, 488, 700
BssT1I CCWWGG 2 cut(s) 468, 630
Bst4CI ACNGT 1 cut(s) 479
BstAPI GCANNNNNTGC 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 271
BstDSI CCRYGG 1 cut(s) 468
BstFNI CGCG 1 cut(s) 204
BstKTI GATC 3 cut(s) 253, 491, 703
BstMAI GTCTC 3 cut(s) 203, 228, 405
BstMBI GATC 3 cut(s) 250, 488, 700
BstMWI GCNNNNNNNGC 2 cut(s) 112, 163
BstNSI RCATGY 1 cut(s) 273
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 4 cut(s) 66, 510, 613, 649
BstV2I GAAGAC 2 cut(s) 105, 649
BsuRI GGCC 2 cut(s) 506, 673
BtgI CCRYGG 1 cut(s) 468
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 152
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 271
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 3 cut(s) 434, 465, 671
Csp6I GTAC 1 cut(s) 299
CspAI ACCGGT 1 cut(s) 194
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 4 cut(s) 270, 302, 469, 704
CviQI GTAC 1 cut(s) 299
DpnI GATC 3 cut(s) 252, 490, 702
DpnII GATC 3 cut(s) 250, 488, 700
EaeI YGGCCR 1 cut(s) 504
Eco130I CCWWGG 2 cut(s) 468, 630
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 434, 465
Eco57I CTGAAG 2 cut(s) 80, 350
EcoO109I RGGNCCY 1 cut(s) 434
EcoT14I CCWWGG 2 cut(s) 468, 630
EcoT22I ATGCAT 1 cut(s) 615
ErhI CCWWGG 2 cut(s) 468, 630
FaeI CATG 4 cut(s) 273, 305, 472, 707
FalI AAGNNNNNCTT 4 cut(s) 90, 122, 200, 232
FaqI GGGAC 4 cut(s) 196, 367, 447, 596
FatI CATG 4 cut(s) 269, 301, 468, 703
FauNDI CATATG 2 cut(s) 609, 615
Fnu4HI GCNGC 4 cut(s) 55, 524, 627, 663
Fsp4HI GCNGC 4 cut(s) 55, 524, 627, 663
FspBI CTAG 2 cut(s) 543, 579
GluI GCNGC 4 cut(s) 55, 524, 627, 663
HaeIII GGCC 2 cut(s) 506, 673
HapII CCGG 2 cut(s) 195, 486
Hin1II CATG 4 cut(s) 273, 305, 472, 707
HinfI GANTC 1 cut(s) 398
HpaII CCGG 2 cut(s) 195, 486
HphI GGTGA 1 cut(s) 574
Hpy188I TCNGA 4 cut(s) 145, 250, 330, 700
Hpy188III TCNNGA 4 cut(s) 178, 254, 486, 590
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 4 cut(s) 284, 335, 395, 403
HpyCH4III ACNGT 1 cut(s) 479
HpyCH4V TGCA 7 cut(s) 115, 121, 157, 220, 364, 526, 613
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 163
Hsp92II CATG 4 cut(s) 273, 305, 472, 707
Kpn2I TCCGGA 1 cut(s) 485
Kzo9I GATC 3 cut(s) 250, 488, 700
LpnPI CCDG 9 cut(s) 71, 125, 163, 208, 273, 416, 436, 499, 654
Lsp1109I GCAGC 4 cut(s) 66, 510, 613, 649
MaeI CTAG 2 cut(s) 543, 579
MaeIII GTNAC 1 cut(s) 479
MalI GATC 3 cut(s) 252, 490, 702
MboI GATC 3 cut(s) 250, 488, 700
MboII GAAGA 3 cut(s) 110, 654, 694
MfeI CAATTG 2 cut(s) 116, 161
MluCI AATT 2 cut(s) 116, 161
MlyI GAGTC 1 cut(s) 407
MmeI TCCRAC 1 cut(s) 595
MnlI CCTC 8 cut(s) 88, 139, 239, 365, 447, 453, 553, 597
Mph1103I ATGCAT 1 cut(s) 615
MroI TCCGGA 1 cut(s) 485
MseI TTAA 1 cut(s) 513
MslI CAYNNNNRTG 2 cut(s) 48, 374
MspI CCGG 2 cut(s) 195, 486
MunI CAATTG 2 cut(s) 116, 161
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 112, 163
NcoI CCATGG 1 cut(s) 468
NdeI CATATG 2 cut(s) 609, 615
NdeII GATC 3 cut(s) 250, 488, 700
NlaIII CATG 4 cut(s) 273, 305, 472, 707
NlaIV GGNNCC 1 cut(s) 435
NsiI ATGCAT 1 cut(s) 615
NspI RCATGY 1 cut(s) 273
PaeI GCATGC 1 cut(s) 273
PflMI CCANNNNNTGG 1 cut(s) 177
PinAI ACCGGT 1 cut(s) 194
PkrI GCNGC 4 cut(s) 56, 525, 628, 664
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
PpuMI RGGWCCY 1 cut(s) 434
PshBI ATTAAT 1 cut(s) 513
Psp5II RGGWCCY 1 cut(s) 434
PspN4I GGNNCC 1 cut(s) 435
PspPI GGNCC 3 cut(s) 434, 465, 671
PspPPI RGGWCCY 1 cut(s) 434
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
RseI CAYNNNNRTG 2 cut(s) 48, 374
SaqAI TTAA 1 cut(s) 513
SatI GCNGC 4 cut(s) 55, 524, 627, 663
Sau3AI GATC 3 cut(s) 250, 488, 700
Sau96I GGNCC 3 cut(s) 434, 465, 671
SchI GAGTC 1 cut(s) 407
SinI GGWCC 2 cut(s) 434, 465
SmiMI CAYNNNNRTG 2 cut(s) 48, 374
SmlI CTYRAG 2 cut(s) 518, 647
SmoI CTYRAG 2 cut(s) 518, 647
SphI GCATGC 1 cut(s) 273
Sse9I AATT 2 cut(s) 116, 161
SsiI CCGC 1 cut(s) 202
SspMI CTAG 2 cut(s) 543, 579
StyI CCWWGG 2 cut(s) 468, 630
TaaI ACNGT 1 cut(s) 479
TaqI TCGA 3 cut(s) 255, 357, 558
TasI AATT 2 cut(s) 116, 161
Tru1I TTAA 1 cut(s) 513
Tru9I TTAA 1 cut(s) 513
TscAI CASTG 1 cut(s) 159
TseI GCWGC 4 cut(s) 54, 523, 626, 662
TspDTI ATGAA 2 cut(s) 318, 567
TspRI CASTG 1 cut(s) 159
Van91I CCANNNNNTGG 1 cut(s) 177
VpaK11BI GGWCC 2 cut(s) 434, 465
VspI ATTAAT 1 cut(s) 513
XceI RCATGY 1 cut(s) 273
XspI CTAG 2 cut(s) 543, 579
Zsp2I ATGCAT 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.