Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008834

Physical Location & Seq

Genomic Coordinates Reverse (-)

41165847 .. 41168089

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G028100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCAGGTGGTGGAAGACACGCTTTACCTGCAATTGCATAAGTTATCAGCCATAAAATCGGAGGAGGCACTGCACCAATTGCTTTCCACTCTCTGGAAAACAAGGAAAACCGGTCTCCGCGACAAGTCCCACTTGCAGTCTCTCCTCAATCTACGATCACTCTCCGACCTCGACCCTGTTTTGGCATGCCTTCGTTCGCTCATCAGAAAATGGGTACATGAAAACTTGACTGCCGACGACCTTCTGAAGCTCTTTCCACCCGATTTGCCCCTCGATTTGCAGAGCATTTTGCTGTTGTCCCTTCAAAAGTTTGAGTCTCAATGGAAGGACGAAATAGCCAGAGAGCAGCCCAGAACCAGTACCAGTGGATGTTATCAGGTTAAGACAACCTCTTTGGGTATGTCGCACTCATTACATAATGATCATGTTGCTCAATTAAGCCGACATGAGTTTGCGTCAGAGTTCACTCCCATGTCTCCTTCCAACTTGGGAACTCTACCTCGCCTAAAGTCAATGACTTGGACCATGGAGAACTGTAACTCCGGATCAGCTAACAAAGTGGCCGTCATTAATCTCAAGCTGCAAGATTATACCAAATCTAGTGTAGATGAAATCGAGGTGAAGTTCCAACTGACTAGGGACACTCTTGAAGCAATGTTGAGGTCATTGACCTACATCAGAGAACAACTCTCAAGCGTGGTTGGGGCTGCTTCTGGGCCATCACAGAAGAAGCAAAAGCAGTCAGATCATGTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMM_domain

Protein Analysis

252

Amino Acids

28.52

Weight (kDa)

8.37

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008834)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29410 FvH4_1g29410 FvH4_1g29410 FvH4_1g29410 FvH4_1g29410
malus_domestica	MD14G1012800.v1.1
prunus_persica	Prupe.1G058500_v2.0.a1 Prupe.7G025800_v2.0.a1 Prupe.7G025800_v2.0.a1 Prupe.7G025800_v2.0.a1
pyrus_communis	pycom14g01080
rosa_chinensis	RchiOBHm_Chr3g0495501
rosa_laevigata	RLG00000022615
rosa_multiflora	Rmu_sc0004755.1_g000025 Rmu_sc0006163.1_g000015
rosa_roxburghii	Rroxscaffold_6G00390480
rosa_rugosa	Rorug03G0273800 Rorug03G0273900
rosa_samantha	Rh3AG321500 Rh3BG356800 Rh3CG353600 Rh3DG356100
rosa_wichuraiana	Rw3G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	36
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccII	CGCG	1 cut(s)	120
AccIII	TCCGGA	1 cut(s)	542
AciI	CCGC	1 cut(s)	118
AclWI	GGATC	1 cut(s)	553
AcoI	YGGCCR	1 cut(s)	561
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	2 cut(s)	216, 361
AfiI	CCNNNNNNNGG	2 cut(s)	93, 181
AgeI	ACCGGT	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	305, 650
AloI	GAACNNNNNNTCC	2 cut(s)	524, 556
AluBI	AGCT	3 cut(s)	250, 551, 580
AluI	AGCT	3 cut(s)	250, 551, 580
Alw26I	GTCTC	4 cut(s)	119, 144, 321, 480
AlwI	GGATC	1 cut(s)	553
Aor13HI	TCCGGA	1 cut(s)	542
AoxI	GGCC	2 cut(s)	561, 716
ApeKI	GCWGC	3 cut(s)	346, 580, 707
ArsI	GACNNNNNNTTYG	4 cut(s)	376, 408, 549, 581
AseI	ATTAAT	1 cut(s)	570
AsiGI	ACCGGT	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	522, 716
AsuHPI	GGTGA	1 cut(s)	631
AvaII	GGWCC	1 cut(s)	522
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	3 cut(s)	358, 567, 694
BccI	CCATC	1 cut(s)	727
BceAI	ACGGC	1 cut(s)	548
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	4 cut(s)	119, 144, 321, 480
BfaI	CTAG	2 cut(s)	600, 636
BfuAI	ACCTGC	1 cut(s)	36
BisI	GCNGC	3 cut(s)	347, 581, 708
BlsI	GCNGC	3 cut(s)	348, 582, 709
Bme18I	GGWCC	1 cut(s)	522
BmgT120I	GGNCC	2 cut(s)	522, 716
BpiI	GAAGAC	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	672, 704
BpuEI	CTTGAG	2 cut(s)	560, 676
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	525
BsaWI	WCCGGW	2 cut(s)	110, 542
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 181
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	357, 363
Bse3DI	GCAATG	1 cut(s)	660
BseAI	TCCGGA	1 cut(s)	542
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	1 cut(s)	374
BseLI	CCNNNNNNNGG	2 cut(s)	93, 181
BseMI	GCAATG	1 cut(s)	660
BseNI	ACTGG	2 cut(s)	357, 363
BseRI	GAGGAG	2 cut(s)	77, 134
BseXI	GCAGC	3 cut(s)	358, 567, 694
BsgI	GTGCAG	1 cut(s)	56
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	563, 718
BshTI	ACCGGT	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	111, 543
BslFI	GGGAC	3 cut(s)	112, 283, 653
BslI	CCNNNNNNNGG	2 cut(s)	93, 181
BsmAI	GTCTC	4 cut(s)	119, 144, 321, 480
BsmFI	GGGAC	3 cut(s)	112, 283, 653
BsnI	GGCC	2 cut(s)	563, 718
Bso31I	GGTCTC	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	542
Bsp143I	GATC	4 cut(s)	155, 421, 545, 745
Bsp19I	CCATGG	1 cut(s)	525
BspACI	CCGC	1 cut(s)	118
BspANI	GGCC	2 cut(s)	563, 718
BspEI	TCCGGA	1 cut(s)	542
BspFNI	CGCG	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	553
BspTNI	GGTCTC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	660
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	357, 363
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	4 cut(s)	155, 421, 545, 745
BssT1I	CCWWGG	1 cut(s)	525
Bst4CI	ACNGT	1 cut(s)	536
BstAPI	GCANNNNNTGC	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	187
BstDSI	CCRYGG	1 cut(s)	525
BstF5I	GGATG	1 cut(s)	374
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	4 cut(s)	158, 424, 548, 748
BstMAI	GTCTC	4 cut(s)	119, 144, 321, 480
BstMBI	GATC	4 cut(s)	155, 421, 545, 745
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 79
BstNSI	RCATGY	1 cut(s)	189
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	358, 567, 694
BstV2I	GAAGAC	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	563, 718
BtgI	CCRYGG	1 cut(s)	525
BtsCI	GGATG	1 cut(s)	374
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	68, 370
BveI	ACCTGC	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	522, 716
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	215, 360
CspAI	ACCGGT	1 cut(s)	110
CspCI	CAANNNNNGTGG	2 cut(s)	246, 281
CviAII	CATG	7 cut(s)	186, 218, 425, 446, 472, 526, 749
CviQI	GTAC	2 cut(s)	215, 360
DpnI	GATC	4 cut(s)	157, 423, 547, 747
DpnII	GATC	4 cut(s)	155, 421, 545, 745
EaeI	YGGCCR	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	525
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	7 cut(s)	189, 221, 428, 449, 475, 529, 752
FalI	AAGNNNNNCTT	3 cut(s)	38, 116, 148
FaqI	GGGAC	3 cut(s)	112, 283, 653
FatI	CATG	7 cut(s)	185, 217, 424, 445, 471, 525, 748
FbaI	TGATCA	1 cut(s)	421
Fnu4HI	GCNGC	3 cut(s)	347, 581, 708
FokI	GGATG	1 cut(s)	381
Fsp4HI	GCNGC	3 cut(s)	347, 581, 708
FspBI	CTAG	2 cut(s)	600, 636
GluI	GCNGC	3 cut(s)	347, 581, 708
HaeIII	GGCC	2 cut(s)	563, 718
HapII	CCGG	2 cut(s)	111, 543
HgaI	GACGC	1 cut(s)	444
Hin1II	CATG	7 cut(s)	189, 221, 428, 449, 475, 529, 752
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	2 cut(s)	111, 543
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188I	TCNGA	7 cut(s)	61, 166, 206, 246, 460, 680, 745
Hpy188III	TCNNGA	3 cut(s)	94, 543, 647
Hpy8I	GTNNAC	1 cut(s)	465
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	5 cut(s)	200, 251, 311, 319, 489
HpyCH4III	ACNGT	1 cut(s)	536
HpyCH4V	TGCA	7 cut(s)	4, 31, 37, 73, 136, 280, 583
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 79
Hsp92II	CATG	7 cut(s)	189, 221, 428, 449, 475, 529, 752
Kpn2I	TCCGGA	1 cut(s)	542
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	4 cut(s)	155, 421, 545, 745
Lsp1109I	GCAGC	3 cut(s)	358, 567, 694
MaeI	CTAG	2 cut(s)	600, 636
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	4 cut(s)	157, 423, 547, 747
MboI	GATC	4 cut(s)	155, 421, 545, 745
MboII	GAAGA	2 cut(s)	26, 739
MfeI	CAATTG	2 cut(s)	32, 77
MluCI	AATT	3 cut(s)	32, 77, 434
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	3 cut(s)	189, 507, 652
MnlI	CCTC	9 cut(s)	55, 58, 155, 179, 281, 400, 510, 610, 654
MroI	TCCGGA	1 cut(s)	542
MseI	TTAA	3 cut(s)	381, 437, 570
MslI	CAYNNNNRTG	1 cut(s)	470
MspI	CCGG	2 cut(s)	111, 543
MunI	CAATTG	2 cut(s)	32, 77
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	28, 79
NcoI	CCATGG	1 cut(s)	525
NdeII	GATC	4 cut(s)	155, 421, 545, 745
NlaIII	CATG	7 cut(s)	189, 221, 428, 449, 475, 529, 752
NspI	RCATGY	1 cut(s)	189
PaeI	GCATGC	1 cut(s)	189
PflMI	CCANNNNNTGG	1 cut(s)	93
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	348, 582, 709
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	570
PspPI	GGNCC	2 cut(s)	522, 716
RsaI	GTAC	2 cut(s)	216, 361
RsaNI	GTAC	2 cut(s)	215, 360
RseI	CAYNNNNRTG	1 cut(s)	470
SaqAI	TTAA	3 cut(s)	381, 437, 570
SatI	GCNGC	3 cut(s)	347, 581, 708
Sau3AI	GATC	4 cut(s)	155, 421, 545, 745
Sau96I	GGNCC	2 cut(s)	522, 716
SchI	GAGTC	1 cut(s)	323
SinI	GGWCC	1 cut(s)	522
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	2 cut(s)	575, 691
SmoI	CTYRAG	2 cut(s)	575, 691
SphI	GCATGC	1 cut(s)	189
Sse9I	AATT	3 cut(s)	32, 77, 434
SsiI	CCGC	1 cut(s)	118
SspMI	CTAG	2 cut(s)	600, 636
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	1 cut(s)	536
TaqI	TCGA	3 cut(s)	171, 273, 615
TasI	AATT	3 cut(s)	32, 77, 434
Tru1I	TTAA	3 cut(s)	381, 437, 570
Tru9I	TTAA	3 cut(s)	381, 437, 570
TscAI	CASTG	2 cut(s)	75, 370
TseI	GCWGC	3 cut(s)	346, 580, 707
TspDTI	ATGAA	2 cut(s)	234, 624
TspRI	CASTG	2 cut(s)	75, 370
Van91I	CCANNNNNTGG	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	522
VspI	ATTAAT	1 cut(s)	570
XceI	RCATGY	1 cut(s)	189
XspI	CTAG	2 cut(s)	600, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.