Prupe.1G058500_v2.0.a1

COMM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0008834
Physical Location & Seq
Reverse (-)
4155528 .. 4156338
811 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G058500.1

Sequence Viewer

Length: 621 bp
ATGGAGGACACACTGCACCTGCAATTGCATAAGCTATCAGCCCTAAAATCAGAGGAAGCACTTGACCAATTGCTTTGCACTCTCTGGAAAACCAGGAAAACCGGTCTCCACTCCCCCCACCAAAAGTCCCACTTCCAATCTCTCCTCAATCTGCCTTCTCTTTCACAACTCCATCCAGTTTTGGCATGCCTTCGATCGCTTATCAGAAAATGGGTACATGAAAACTTCACTGGTGATGACCTTTTGAAGCTCTTCCCTCCCGATTTACCGCTCGATTTGCAGAGCAATTTGGTGGTGTTGTTCCACAAGTATCAGTCTCAATGGAAGGATGAAGTAGCCCGAGAACAGCTGCGTTCATTGCCAAGGACTAGTGTTTCGTATCAGGTCAAGACAAGGCCGGCTAATAGAGTGGCTGTCATCAATCTTAAGTTGCAAGATTATACCAAATCTCCTTTAGATGAAATCGAGGTAAAGTTTCAACTGACTAGGGACACTCTTGAAGCGATGCTGAGATCATTGACTTACATCAAGGAACAACTCTCAAGCATGGTTGGGACTATTTCTGGGCCATCACAAAAGAAACAAAAGCAATCGGATCATTTGCAGGAGCAAGGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMM_domain

Protein Analysis

207

Amino Acids

23.77

Weight (kDa)

9.02

Isoelectric Point (pI)

63.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 27
Acc36I ACCTGC 1 cut(s) 27
AccBSI CCGCTC 1 cut(s) 271
AciI CCGC 1 cut(s) 269
AclWI GGATC 1 cut(s) 603
AfaI GTAC 1 cut(s) 216
AflII CTTAAG 1 cut(s) 425
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 3 cut(s) 247, 479, 500
AhlI ACTAGT 1 cut(s) 368
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 3 cut(s) 34, 250, 349
AluI AGCT 3 cut(s) 34, 250, 349
Alw26I GTCTC 2 cut(s) 110, 321
AlwI GGATC 1 cut(s) 603
Ama87I CYCGRG 1 cut(s) 339
AoxI GGCC 2 cut(s) 395, 566
ApeKI GCWGC 1 cut(s) 349
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
AsiGI ACCGGT 1 cut(s) 101
Asp700I GAANNNNTTC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 339
BbvI GCAGC 1 cut(s) 336
BccI CCATC 2 cut(s) 180, 577
BciT130I CCWGG 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 110, 321
BcuI ACTAGT 1 cut(s) 368
BfaI CTAG 2 cut(s) 369, 486
BfrI CTTAAG 1 cut(s) 425
BfuAI ACCTGC 1 cut(s) 27
BisI GCNGC 1 cut(s) 350
BlsI GCNGC 1 cut(s) 351
Bme1390I CCNGG 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 566
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 495
BpuEI CTTGAG 1 cut(s) 526
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 362
BsaWI WCCGGW 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 433, 463
Bse118I RCCGGY 2 cut(s) 101, 397
Bse1I ACTGG 2 cut(s) 176, 235
Bse3DI GCAATG 1 cut(s) 356
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 2 cut(s) 172, 334
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 2 cut(s) 176, 235
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 336
Bsh1285I CGRYCG 1 cut(s) 197
BshFI GGCC 2 cut(s) 397, 568
BshTI ACCGGT 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 197
BsiHKCI CYCGRG 1 cut(s) 339
BsiSI CCGG 2 cut(s) 102, 398
BslFI GGGAC 3 cut(s) 112, 503, 568
BsmAI GTCTC 2 cut(s) 110, 321
BsmFI GGGAC 3 cut(s) 112, 503, 568
BsnI GGCC 2 cut(s) 397, 568
Bso31I GGTCTC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 339
Bsp143I GATC 3 cut(s) 194, 512, 595
BspACI CCGC 1 cut(s) 269
BspANI GGCC 2 cut(s) 397, 568
BspCNI CTCAG 1 cut(s) 501
BspMI ACCTGC 1 cut(s) 27
BspPI GGATC 1 cut(s) 603
BspQI GCTCTTC 1 cut(s) 257
BspTI CTTAAG 1 cut(s) 425
BspTNI GGTCTC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 356
BsrFI RCCGGY 2 cut(s) 101, 397
BsrI ACTGG 2 cut(s) 176, 235
BssAI RCCGGY 2 cut(s) 101, 397
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 3 cut(s) 194, 512, 595
BssT1I CCWWGG 1 cut(s) 362
Bst2UI CCWGG 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 257
BstAFI CTTAAG 1 cut(s) 425
BstC8I GCNNGC 2 cut(s) 187, 399
BstDEI CTNAG 1 cut(s) 509
BstF5I GGATG 2 cut(s) 172, 334
BstKTI GATC 3 cut(s) 197, 515, 598
BstMAI GTCTC 2 cut(s) 110, 321
BstMBI GATC 3 cut(s) 194, 512, 595
BstMCI CGRYCG 1 cut(s) 197
BstMWI GCNNNNNNNGC 2 cut(s) 277, 358
BstNI CCWGG 1 cut(s) 94
BstNSI RCATGY 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 336
BsuRI GGCC 2 cut(s) 397, 568
BtgZI GCGATG 1 cut(s) 518
BtsCI GGATG 2 cut(s) 172, 334
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 2 cut(s) 11, 228
BveI ACCTGC 1 cut(s) 27
Cac8I GCNNGC 2 cut(s) 187, 399
Cfr10I RCCGGY 2 cut(s) 101, 397
Cfr13I GGNCC 1 cut(s) 566
Csp6I GTAC 1 cut(s) 215
CspAI ACCGGT 1 cut(s) 101
CviAII CATG 3 cut(s) 186, 218, 547
CviJI RGCY 9 cut(s) 34, 41, 250, 338, 349, 397, 401, 413, 568
CviKI_1 RGCY 9 cut(s) 34, 41, 250, 338, 349, 397, 401, 413, 568
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 1 cut(s) 509
DpnI GATC 3 cut(s) 196, 514, 597
DpnII GATC 3 cut(s) 194, 512, 595
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco130I CCWWGG 1 cut(s) 362
Eco31I GGTCTC 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 362
FaeI CATG 3 cut(s) 189, 221, 550
FaiI YATR 5 cut(s) 30, 187, 219, 441, 548
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FaqI GGGAC 3 cut(s) 112, 503, 568
FatI CATG 3 cut(s) 185, 217, 546
Fnu4HI GCNGC 1 cut(s) 350
FokI GGATG 2 cut(s) 159, 341
Fsp4HI GCNGC 1 cut(s) 350
FspBI CTAG 2 cut(s) 369, 486
GluI GCNGC 1 cut(s) 350
HaeIII GGCC 2 cut(s) 397, 568
HapII CCGG 2 cut(s) 102, 398
Hin1II CATG 3 cut(s) 189, 221, 550
HpaII CCGG 2 cut(s) 102, 398
HphI GGTGA 1 cut(s) 245
Hpy188I TCNGA 3 cut(s) 52, 206, 595
Hpy188III TCNNGA 4 cut(s) 85, 260, 388, 497
HpyAV CCTTC 3 cut(s) 165, 200, 319
HpyCH4V TGCA 7 cut(s) 16, 22, 28, 78, 280, 433, 604
HpyF10VI GCNNNNNNNGC 2 cut(s) 277, 358
HpyF3I CTNAG 1 cut(s) 509
Hsp92II CATG 3 cut(s) 189, 221, 550
KroI GCCGGC 1 cut(s) 397
KroNI GCCGGC 1 cut(s) 399
Kzo9I GATC 3 cut(s) 194, 512, 595
LguI GCTCTTC 1 cut(s) 257
LmnI GCTCC 1 cut(s) 607
Lsp1109I GCAGC 1 cut(s) 336
LweI GCATC 1 cut(s) 495
MaeI CTAG 2 cut(s) 369, 486
MalI GATC 3 cut(s) 196, 514, 597
MbiI CCGCTC 1 cut(s) 271
MboI GATC 3 cut(s) 194, 512, 595
MboII GAAGA 1 cut(s) 244
MfeI CAATTG 2 cut(s) 23, 68
MluCI AATT 3 cut(s) 23, 68, 286
MnlI CCTC 4 cut(s) 46, 155, 267, 460
MroNI GCCGGC 1 cut(s) 397
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 349
MspCI CTTAAG 1 cut(s) 425
MspI CCGG 2 cut(s) 102, 398
MspR9I CCNGG 1 cut(s) 94
MunI CAATTG 2 cut(s) 23, 68
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 277, 358
NaeI GCCGGC 1 cut(s) 399
NdeII GATC 3 cut(s) 194, 512, 595
NgoMIV GCCGGC 1 cut(s) 397
NlaIII CATG 3 cut(s) 189, 221, 550
NspI RCATGY 1 cut(s) 189
PaeI GCATGC 1 cut(s) 189
PaqCI CACCTGC 1 cut(s) 27
PciSI GCTCTTC 1 cut(s) 257
PdiI GCCGGC 1 cut(s) 399
PdmI GAANNNNTTC 1 cut(s) 251
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 1 cut(s) 351
Ple19I CGATCG 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspPI GGNCC 1 cut(s) 566
PvuI CGATCG 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 349
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
SapI GCTCTTC 1 cut(s) 257
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 1 cut(s) 350
Sau3AI GATC 3 cut(s) 194, 512, 595
Sau96I GGNCC 1 cut(s) 566
ScrFI CCNGG 1 cut(s) 94
SetI ASST 7 cut(s) 21, 36, 243, 252, 351, 387, 471
SfaNI GCATC 1 cut(s) 495
SmlI CTYRAG 2 cut(s) 425, 541
SmoI CTYRAG 2 cut(s) 425, 541
SpeI ACTAGT 1 cut(s) 368
SphI GCATGC 1 cut(s) 189
Sse9I AATT 3 cut(s) 23, 68, 286
SsiI CCGC 1 cut(s) 269
SspMI CTAG 2 cut(s) 369, 486
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 1 cut(s) 362
TaqI TCGA 3 cut(s) 193, 273, 465
TasI AATT 3 cut(s) 23, 68, 286
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 2 cut(s) 18, 235
TseI GCWGC 1 cut(s) 349
TspDTI ATGAA 4 cut(s) 234, 345, 345, 474
TspRI CASTG 2 cut(s) 18, 235
Vha464I CTTAAG 1 cut(s) 425
XceI RCATGY 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 2 cut(s) 369, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.