Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0008834

Physical Location & Seq

Genomic Coordinates Reverse (-)

42488582 .. 42491339

Gene Structure 2758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG356800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGACTCGTTGGAGGGGAGGAGGAAACTGGAAAAGAAGGAAAATGGAGGTGGTGGAAGACACGCTTTACCTGCAATTGCATAAGTTATCAGCCATAAAATCGGAGGAAGCACTGCACCAATTGCTTTCCACTCTCTGGAAAACAAGGAAAACCGGTCTCCGCGACAAGTCCCACTTGCAGTCTCTCCTCAATCTACGATCACTCTCCGACCTCGACCCTGTTTTGGCATGCCTTCGTTCGCTCATCAGAAAATGGGTACATGAAAACTTGACTGCCGACGACCTTCTGAAGCTCTTTCCACCCGATTTGCCCCTCGATTTGCAGAGCATTTTTCTGTTGTCCCTTCAAAAGTTTGAGTCTCAATGGAAGGACGAAATAGCCAGAGAGCAGGTTCAGCCCAGAACCAGTGGATGTTTTCAGGTTAAGACAACCTCTTTGGGTATGTCGCCCTCATTACATAATGATCATGTTGCTCCATTAAGCCGACATGAGTTTGCGTCAGAGTTCACTCCCGTGTCTCCTTGCAACTTGGCAAGTCTTATTCCATACATTACAACTTTCTATCTTAATTTCTTTAAAGGATACAACAATGGCACCGTTCCATGCCATTTACACAACATATTACATCTTCCCTTTCACTTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMM_domain

Protein Analysis

215

Amino Acids

24.88

Weight (kDa)

9.08

Isoelectric Point (pI)

64.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008834)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29410 FvH4_1g29410 FvH4_1g29410 FvH4_1g29410 FvH4_1g29410
malus_domestica	MD14G1012800.v1.1
prunus_persica	Prupe.1G058500_v2.0.a1 Prupe.7G025800_v2.0.a1 Prupe.7G025800_v2.0.a1 Prupe.7G025800_v2.0.a1
pyrus_communis	pycom14g01080
rosa_chinensis	RchiOBHm_Chr3g0495501
rosa_laevigata	RLG00000022615
rosa_multiflora	Rmu_sc0004755.1_g000025 Rmu_sc0006163.1_g000015
rosa_roxburghii	Rroxscaffold_6G00390480
rosa_rugosa	Rorug03G0273800 Rorug03G0273900
rosa_samantha	Rh3AG321500 Rh3BG356800 Rh3CG353600 Rh3DG356100
rosa_wichuraiana	Rw3G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	78, 379
AccB1I	GGYRCC	1 cut(s)	593
AccB7I	CCANNNNNTGG	1 cut(s)	135
AccII	CGCG	1 cut(s)	162
AciI	CCGC	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	2 cut(s)	135, 223
AgeI	ACCGGT	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	347
AleI	CACNNNNGTG	1 cut(s)	512
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Alw26I	GTCTC	4 cut(s)	161, 186, 363, 522
ArsI	GACNNNNNNTTYG	2 cut(s)	418, 450
AsiGI	ACCGGT	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	63
BciVI	GTATCC	1 cut(s)	575
BclI	TGATCA	1 cut(s)	463
BcoDI	GTCTC	4 cut(s)	161, 186, 363, 522
BfaI	CTAG	1 cut(s)	646
BfuAI	ACCTGC	2 cut(s)	78, 379
BfuI	GTATCC	1 cut(s)	575
BmiI	GGNNCC	1 cut(s)	595
BpiI	GAAGAC	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	161
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 223
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	2 cut(s)	32, 405
BseGI	GGATG	1 cut(s)	416
BseLI	CCNNNNNNNGG	2 cut(s)	135, 223
BseNI	ACTGG	2 cut(s)	32, 405
BseRI	GAGGAG	2 cut(s)	33, 176
BsgI	GTGCAG	1 cut(s)	98
Bsh1236I	CGCG	1 cut(s)	162
BshNI	GGYRCC	1 cut(s)	593
BshTI	ACCGGT	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	2 cut(s)	154, 325
BslI	CCNNNNNNNGG	2 cut(s)	135, 223
BsmAI	GTCTC	4 cut(s)	161, 186, 363, 522
BsmFI	GGGAC	2 cut(s)	154, 325
Bso31I	GGTCTC	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	197, 463
BspACI	CCGC	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	595
BspMI	ACCTGC	2 cut(s)	78, 379
BspT107I	GGYRCC	1 cut(s)	593
BspTNI	GGTCTC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	32, 405
BssAI	RCCGGY	1 cut(s)	152
BssMI	GATC	2 cut(s)	197, 463
Bst4CI	ACNGT	1 cut(s)	598
BstAPI	GCANNNNNTGC	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	416
BstFNI	CGCG	1 cut(s)	162
BstKTI	GATC	2 cut(s)	200, 466
BstMAI	GTCTC	4 cut(s)	161, 186, 363, 522
BstMBI	GATC	2 cut(s)	197, 463
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 121, 394
BstNSI	RCATGY	1 cut(s)	231
BstUI	CGCG	1 cut(s)	162
BstV2I	GAAGAC	1 cut(s)	63
BsuI	GTATCC	1 cut(s)	575
BtsCI	GGATG	1 cut(s)	416
BtsI	GCAGTG	1 cut(s)	110
BtsIMutI	CAGTG	2 cut(s)	110, 412
BveI	ACCTGC	2 cut(s)	78, 379
Cac8I	GCNNGC	1 cut(s)	229
Cfr10I	RCCGGY	1 cut(s)	152
CseI	GACGC	1 cut(s)	486
Csp6I	GTAC	1 cut(s)	257
CspAI	ACCGGT	1 cut(s)	152
CspCI	CAANNNNNGTGG	2 cut(s)	288, 323
CviAII	CATG	5 cut(s)	228, 260, 467, 488, 603
CviJI	RGCY	5 cut(s)	92, 292, 380, 397, 483
CviKI_1	RGCY	5 cut(s)	92, 292, 380, 397, 483
CviQI	GTAC	1 cut(s)	257
DpnI	GATC	2 cut(s)	199, 465
DpnII	GATC	2 cut(s)	197, 463
DraI	TTTAAA	1 cut(s)	577
Eco31I	GGTCTC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	308
FaeI	CATG	5 cut(s)	231, 263, 470, 491, 606
FalI	AAGNNNNNCTT	4 cut(s)	48, 80, 158, 190
FaqI	GGGAC	2 cut(s)	154, 325
FatI	CATG	5 cut(s)	227, 259, 466, 487, 602
FbaI	TGATCA	1 cut(s)	463
FokI	GGATG	1 cut(s)	423
FspBI	CTAG	1 cut(s)	646
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	486
Hin1II	CATG	5 cut(s)	231, 263, 470, 491, 606
HinfI	GANTC	2 cut(s)	4, 356
HpaII	CCGG	1 cut(s)	153
Hpy166II	GTNNAC	1 cut(s)	507
Hpy188I	TCNGA	5 cut(s)	103, 208, 248, 288, 502
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	507
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	5 cut(s)	30, 242, 293, 353, 361
HpyCH4III	ACNGT	1 cut(s)	598
HpyCH4V	TGCA	6 cut(s)	73, 79, 115, 178, 322, 525
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 121, 394
Hsp92II	CATG	5 cut(s)	231, 263, 470, 491, 606
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	2 cut(s)	197, 463
LmnI	GCTCC	1 cut(s)	478
MaeI	CTAG	1 cut(s)	646
MalI	GATC	2 cut(s)	199, 465
MboI	GATC	2 cut(s)	197, 463
MboII	GAAGA	3 cut(s)	68, 620, 634
MfeI	CAATTG	2 cut(s)	74, 119
MluCI	AATT	3 cut(s)	74, 119, 568
MlyI	GAGTC	1 cut(s)	365
MmeI	TCCRAC	1 cut(s)	231
MseI	TTAA	4 cut(s)	423, 479, 567, 576
MslI	CAYNNNNRTG	1 cut(s)	512
MspI	CCGG	1 cut(s)	153
MunI	CAATTG	2 cut(s)	74, 119
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	3 cut(s)	70, 121, 394
NdeII	GATC	2 cut(s)	197, 463
NlaIII	CATG	5 cut(s)	231, 263, 470, 491, 606
NlaIV	GGNNCC	1 cut(s)	595
NspI	RCATGY	1 cut(s)	231
OliI	CACNNNNGTG	1 cut(s)	512
PaeI	GCATGC	1 cut(s)	231
PflMI	CCANNNNNTGG	1 cut(s)	135
PinAI	ACCGGT	1 cut(s)	152
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	595
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	512
SaqAI	TTAA	4 cut(s)	423, 479, 567, 576
Sau3AI	GATC	2 cut(s)	197, 463
SchI	GAGTC	1 cut(s)	365
SetI	ASST	8 cut(s)	51, 72, 213, 285, 294, 393, 423, 434
SmiMI	CAYNNNNRTG	1 cut(s)	512
SphI	GCATGC	1 cut(s)	231
Sse9I	AATT	3 cut(s)	74, 119, 568
SsiI	CCGC	1 cut(s)	160
SspMI	CTAG	1 cut(s)	646
TaaI	ACNGT	1 cut(s)	598
TaqI	TCGA	2 cut(s)	213, 315
TasI	AATT	3 cut(s)	74, 119, 568
Tru1I	TTAA	4 cut(s)	423, 479, 567, 576
Tru9I	TTAA	4 cut(s)	423, 479, 567, 576
TscAI	CASTG	2 cut(s)	117, 412
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	2 cut(s)	117, 412
Van91I	CCANNNNNTGG	1 cut(s)	135
XceI	RCATGY	1 cut(s)	231
XspI	CTAG	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.