Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0008834

Physical Location & Seq

Genomic Coordinates Reverse (-)

43328235 .. 43331369

Gene Structure 3135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG356100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAGGTGGTGGAAGACACGCTTTACCTGCAATTGCATAAGTTATCAGCCATAAAATCGGAGGAAGCACTGCACCAATTGCTTTCCACTCTCTGGAAAACAAGGAAAACCGGTCTCCGCGACAAGTCCCACTTGCAGTCTCTCCTCAATCTACGATCACTCTCCGACCTCGACCCTGTTTTGGCATGCCTTCGTTCGCTCATCAGAAAATGGGTACATGAAAACTTGACTGCCGACGACCTTCTGAAGCTCTTTCCACCCGATTTGCCCCTCGATTTGCAGAGCATTTTGCTGTTGTCCCTTCAAAAGTTTGAGTCTCAATGGAAGGACGAAATAGCCAGAGAGCAGCCCAGAACCAGTACCAGTGGATGTTATCAGGTTAAGACAACCTCTTTGGGTATGTCGCACTCATTACATAATGATCATGTTGCTCAATTAAGCCGACATGAGTTTGCGTCAGAGTTCACTCCCATGTCTCCCTCCAACTTGGCAAGTCTCATTCCATACATTACAACTTTCTATCTTAATTTCTTTAAAGGATACAACAATGGCAACGTTCCATGCTATTTACACAACATATTACATCTTCCCTTTCACTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMM_domain

Protein Analysis

201

Amino Acids

23.14

Weight (kDa)

6.83

Isoelectric Point (pI)

57.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008834)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29410 FvH4_1g29410 FvH4_1g29410 FvH4_1g29410 FvH4_1g29410
malus_domestica	MD14G1012800.v1.1
prunus_persica	Prupe.1G058500_v2.0.a1 Prupe.7G025800_v2.0.a1 Prupe.7G025800_v2.0.a1 Prupe.7G025800_v2.0.a1
pyrus_communis	pycom14g01080
rosa_chinensis	RchiOBHm_Chr3g0495501
rosa_laevigata	RLG00000022615
rosa_multiflora	Rmu_sc0004755.1_g000025 Rmu_sc0006163.1_g000015
rosa_roxburghii	Rroxscaffold_6G00390480
rosa_rugosa	Rorug03G0273800 Rorug03G0273900
rosa_samantha	Rh3AG321500 Rh3BG356800 Rh3CG353600 Rh3DG356100
rosa_wichuraiana	Rw3G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	36
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccII	CGCG	1 cut(s)	120
AciI	CCGC	1 cut(s)	118
AclI	AACGTT	1 cut(s)	555
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	2 cut(s)	216, 361
AfiI	CCNNNNNNNGG	2 cut(s)	93, 181
AgeI	ACCGGT	1 cut(s)	110
AgsI	TTSAA	1 cut(s)	305
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw26I	GTCTC	5 cut(s)	119, 144, 321, 480, 500
ApeKI	GCWGC	1 cut(s)	346
ArsI	GACNNNNNNTTYG	2 cut(s)	376, 408
AsiGI	ACCGGT	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	358
BciVI	GTATCC	1 cut(s)	533
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	5 cut(s)	119, 144, 321, 480, 500
BfuAI	ACCTGC	1 cut(s)	36
BfuI	GTATCC	1 cut(s)	533
BisI	GCNGC	1 cut(s)	347
BlsI	GCNGC	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 181
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	357, 363
BseGI	GGATG	1 cut(s)	374
BseLI	CCNNNNNNNGG	2 cut(s)	93, 181
BseNI	ACTGG	2 cut(s)	357, 363
BseRI	GAGGAG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	358
BsgI	GTGCAG	1 cut(s)	56
Bsh1236I	CGCG	1 cut(s)	120
BshTI	ACCGGT	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	2 cut(s)	112, 283
BslI	CCNNNNNNNGG	2 cut(s)	93, 181
BsmAI	GTCTC	5 cut(s)	119, 144, 321, 480, 500
BsmFI	GGGAC	2 cut(s)	112, 283
Bso31I	GGTCTC	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	155, 421
BspACI	CCGC	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	36
BspTNI	GGTCTC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	357, 363
BssAI	RCCGGY	1 cut(s)	110
BssMI	GATC	2 cut(s)	155, 421
BstAPI	GCANNNNNTGC	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	374
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	2 cut(s)	158, 424
BstMAI	GTCTC	5 cut(s)	119, 144, 321, 480, 500
BstMBI	GATC	2 cut(s)	155, 421
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 79
BstNSI	RCATGY	1 cut(s)	189
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	358
BstV2I	GAAGAC	1 cut(s)	21
BsuI	GTATCC	1 cut(s)	533
BtsCI	GGATG	1 cut(s)	374
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	68, 370
BveI	ACCTGC	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	110
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	215, 360
CspAI	ACCGGT	1 cut(s)	110
CspCI	CAANNNNNGTGG	2 cut(s)	246, 281
CviAII	CATG	6 cut(s)	186, 218, 425, 446, 472, 561
CviJI	RGCY	5 cut(s)	50, 250, 338, 349, 441
CviKI_1	RGCY	5 cut(s)	50, 250, 338, 349, 441
CviQI	GTAC	2 cut(s)	215, 360
DpnI	GATC	2 cut(s)	157, 423
DpnII	GATC	2 cut(s)	155, 421
DraI	TTTAAA	1 cut(s)	535
Eco31I	GGTCTC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	266
FaeI	CATG	6 cut(s)	189, 221, 428, 449, 475, 564
FalI	AAGNNNNNCTT	3 cut(s)	38, 116, 148
FaqI	GGGAC	2 cut(s)	112, 283
FatI	CATG	6 cut(s)	185, 217, 424, 445, 471, 560
FbaI	TGATCA	1 cut(s)	421
Fnu4HI	GCNGC	1 cut(s)	347
FokI	GGATG	1 cut(s)	381
Fsp4HI	GCNGC	1 cut(s)	347
GluI	GCNGC	1 cut(s)	347
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	1 cut(s)	444
Hin1II	CATG	6 cut(s)	189, 221, 428, 449, 475, 564
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	1 cut(s)	111
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188I	TCNGA	5 cut(s)	61, 166, 206, 246, 460
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	465
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	4 cut(s)	200, 251, 311, 319
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	5 cut(s)	31, 37, 73, 136, 280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 79
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	6 cut(s)	189, 221, 428, 449, 475, 564
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	155, 421
LpnPI	CCDG	9 cut(s)	41, 79, 124, 189, 352, 362, 364, 370, 376
Lsp1109I	GCAGC	1 cut(s)	358
MaeII	ACGT	1 cut(s)	555
MalI	GATC	2 cut(s)	157, 423
MboI	GATC	2 cut(s)	155, 421
MboII	GAAGA	2 cut(s)	26, 578
MfeI	CAATTG	2 cut(s)	32, 77
MluCI	AATT	4 cut(s)	32, 77, 434, 526
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	2 cut(s)	189, 507
MnlI	CCTC	6 cut(s)	55, 155, 179, 281, 400, 490
MseI	TTAA	4 cut(s)	381, 437, 525, 534
MslI	CAYNNNNRTG	1 cut(s)	470
MspI	CCGG	1 cut(s)	111
MunI	CAATTG	2 cut(s)	32, 77
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	28, 79
NdeII	GATC	2 cut(s)	155, 421
NlaIII	CATG	6 cut(s)	189, 221, 428, 449, 475, 564
NspI	RCATGY	1 cut(s)	189
PaeI	GCATGC	1 cut(s)	189
PflMI	CCANNNNNTGG	1 cut(s)	93
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	348
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp1406I	AACGTT	1 cut(s)	555
RsaI	GTAC	2 cut(s)	216, 361
RsaNI	GTAC	2 cut(s)	215, 360
RseI	CAYNNNNRTG	1 cut(s)	470
SaqAI	TTAA	4 cut(s)	381, 437, 525, 534
SatI	GCNGC	1 cut(s)	347
Sau3AI	GATC	2 cut(s)	155, 421
SchI	GAGTC	1 cut(s)	323
SetI	ASST	8 cut(s)	9, 30, 171, 243, 252, 381, 392, 558
SmiMI	CAYNNNNRTG	1 cut(s)	470
SphI	GCATGC	1 cut(s)	189
Sse9I	AATT	4 cut(s)	32, 77, 434, 526
SsiI	CCGC	1 cut(s)	118
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	2 cut(s)	171, 273
TasI	AATT	4 cut(s)	32, 77, 434, 526
Tru1I	TTAA	4 cut(s)	381, 437, 525, 534
Tru9I	TTAA	4 cut(s)	381, 437, 525, 534
TscAI	CASTG	2 cut(s)	75, 370
TseI	GCWGC	1 cut(s)	346
TspDTI	ATGAA	1 cut(s)	234
TspRI	CASTG	2 cut(s)	75, 370
Van91I	CCANNNNNTGG	1 cut(s)	93
XceI	RCATGY	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.