FvH4_1g29620

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0004571
Physical Location & Seq
Forward (+)
22884178 .. 22888622
4445 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29620.t3

Sequence Viewer

Length: 888 bp
ATGGCGAATGTCCTCCGAAGTTCAGCTTTGAGGGCACCATTCGCACCTCTTCCTCCTACAGCTCTCTCCTCAAACTCTCCGAAACCCTTTTACGTTTCGTTTAGACGACAAAGGCTGGCGGTTAGCACCACTCTCCGCTTCTCTCACTTTCCGTCCCTCGGCTTCGTGCCTTTCGCTTCCCAACAGCAGCAGGGTGAAACCGATACTACTGACACCCTCGATGCCCAAGACCTTGAGGAGGAGGATTCTTTAGATGGGGCAGTCAGTGTGGAAGACAGTACAAGTGACGCTGAAGAAAGTGGTATAAGTGATGATGGGGAAGCTGATGACAAAAAACCTGCTTCAGCCGTCATAGCTTCACTACAATTATACAAAGAAGCTTTAGCTAGTAACGATGAATCAAAAGTGGCCGAGATTGAATCTTTTCTAAAATCTATTGAAGATGAAAAAATAGGCCTTGAAATGAAAGTGGCTTCTTTGTCTGAAGAACTGTCAGCAGAGAAGGTTCGGATTCTGAGGATTAGTGCAGACTTTGATAATTTTCGGAAAAGGACAGATAGAGAACGGGTTTCACTGGTAACTAATGCTCAGGGGGAAGTTGTTGAGAGCTTGTTGGGTGTATTGGATAATTTTGAGAGGGCTAAATCCCAGATTAAGATAGAGACAGAGGGAGAGGAGAAGATCAACAAAAGCTATCAGAGCATTTATAAACAGTTCGGAGAAATCTTGAGTTCACTTGGCGTTCTCCCAGTAGAGACAGTGGGGAAGCCCTTTGATCCAGTGGTTAGATACCAAGTTGGCTCGAAATTCAATCAATTACTTGATGAACTTTATCAAATAGTTGGTAAAATTTGTTCAGGTTTGATGAAGACCTGGATACGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GrpE

Protein Analysis

296

Amino Acids

32.66

Weight (kDa)

4.7

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GrpE PF01025 149 - 302 2.1e-40 GrpE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 708
Acc36I ACCTGC 1 cut(s) 346
AccB1I GGYRCC 1 cut(s) 34
AciI CCGC 2 cut(s) 119, 136
AclWI GGATC 1 cut(s) 770
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 2 cut(s) 806, 849
AcuI CTGAAG 3 cut(s) 312, 327, 504
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 3 cut(s) 158, 238, 879
AgsI TTSAA 4 cut(s) 419, 440, 461, 811
AjnI CCWGG 1 cut(s) 872
AluBI AGCT 8 cut(s) 26, 62, 323, 356, 380, 386, 609, 693
AluI AGCT 8 cut(s) 26, 62, 323, 356, 380, 386, 609, 693
Alw26I GTCTC 2 cut(s) 656, 749
AlwI GGATC 1 cut(s) 770
AoxI GGCC 2 cut(s) 408, 454
ApeKI GCWGC 1 cut(s) 187
ApoI RAATTY 2 cut(s) 806, 849
Asp700I GAANNNNTTC 1 cut(s) 423
AsuHPI GGTGA 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 34
BbsI GAAGAC 2 cut(s) 279, 875
BbvI GCAGC 1 cut(s) 199
BccI CCATC 2 cut(s) 248, 308
BceAI ACGGC 1 cut(s) 332
BciT130I CCWGG 1 cut(s) 874
BciVI GTATCC 1 cut(s) 870
BcoDI GTCTC 2 cut(s) 656, 749
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 346
BfuI GTATCC 1 cut(s) 870
BisI GCNGC 1 cut(s) 188
BlsI GCNGC 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 874
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 874
BmrI ACTGGG 1 cut(s) 743
BmsI GCATC 1 cut(s) 211
BmuI ACTGGG 1 cut(s) 743
BpiI GAAGAC 2 cut(s) 279, 875
Bpu10I CCTNAGC 1 cut(s) 588
BpuEI CTTGAG 2 cut(s) 254, 748
BsaJI CCNNGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 238, 879
Bse1I ACTGG 3 cut(s) 579, 749, 779
BseBI CCWGG 1 cut(s) 874
BseDI CCNNGG 1 cut(s) 157
BseLI CCNNNNNNNGG 3 cut(s) 158, 238, 879
BseMII CTCAG 2 cut(s) 506, 602
BseNI ACTGG 3 cut(s) 579, 749, 779
BseRI GAGGAG 4 cut(s) 58, 251, 254, 689
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 1 cut(s) 199
BsgI GTGCAG 1 cut(s) 546
BshFI GGCC 2 cut(s) 410, 456
BshNI GGYRCC 1 cut(s) 34
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 3 cut(s) 158, 238, 879
BsmAI GTCTC 2 cut(s) 656, 749
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 2 cut(s) 410, 456
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 2 cut(s) 681, 775
BspACI CCGC 2 cut(s) 119, 136
BspANI GGCC 2 cut(s) 410, 456
BspCNI CTCAG 2 cut(s) 507, 601
BspLI GGNNCC 1 cut(s) 36
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 1 cut(s) 770
BspT107I GGYRCC 1 cut(s) 34
BsrI ACTGG 3 cut(s) 579, 749, 779
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 2 cut(s) 681, 775
Bst2UI CCWGG 1 cut(s) 874
Bst4CI ACNGT 5 cut(s) 278, 492, 714, 760, 882
Bst6I CTCTTC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 2 cut(s) 515, 588
BstENI CCTNNNNNAGG 1 cut(s) 236
BstKTI GATC 2 cut(s) 684, 778
BstMAI GTCTC 2 cut(s) 656, 749
BstMBI GATC 2 cut(s) 681, 775
BstMWI GCNNNNNNNGC 4 cut(s) 32, 41, 353, 699
BstNI CCWGG 1 cut(s) 874
BstSCI CCNGG 1 cut(s) 872
BstSFI CTRYAG 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 199
BstV2I GAAGAC 2 cut(s) 279, 875
BsuI GTATCC 1 cut(s) 870
BsuRI GGCC 2 cut(s) 410, 456
BtsIMutI CAGTG 4 cut(s) 271, 572, 765, 786
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 117
CseI GACGC 1 cut(s) 296
Csp6I GTAC 1 cut(s) 279
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 2 cut(s) 515, 588
DpnI GATC 2 cut(s) 683, 777
DpnII GATC 2 cut(s) 681, 775
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco147I AGGCCT 1 cut(s) 456
Eco57I CTGAAG 3 cut(s) 312, 327, 504
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 872
FaiI YATR 4 cut(s) 305, 353, 370, 708
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FaqI GGGAC 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 188
FspBI CTAG 1 cut(s) 387
GluI GCNGC 1 cut(s) 188
HaeIII GGCC 2 cut(s) 410, 456
HgaI GACGC 1 cut(s) 296
HindIII AAGCTT 1 cut(s) 378
HinfI GANTC 4 cut(s) 245, 398, 419, 511
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 734
Hpy188I TCNGA 8 cut(s) 17, 81, 484, 510, 516, 546, 699, 719
Hpy188III TCNNGA 1 cut(s) 727
Hpy8I GTNNAC 1 cut(s) 734
HpyAV CCTTC 1 cut(s) 496
HpyCH4III ACNGT 5 cut(s) 278, 492, 714, 760, 882
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 527
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 41, 353, 699
HpyF3I CTNAG 2 cut(s) 515, 588
HpySE526I ACGT 1 cut(s) 93
Kzo9I GATC 2 cut(s) 681, 775
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 1 cut(s) 211
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 3 cut(s) 284, 389, 577
MalI GATC 2 cut(s) 683, 777
MboI GATC 2 cut(s) 681, 775
MboII GAAGA 7 cut(s) 41, 284, 305, 452, 497, 691, 880
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 6 cut(s) 365, 538, 628, 806, 815, 849
MroXI GAANNNNTTC 1 cut(s) 423
MseI TTAA 2 cut(s) 654, 886
MspR9I CCNGG 1 cut(s) 874
MvaI CCWGG 1 cut(s) 874
MwoI GCNNNNNNNGC 4 cut(s) 32, 41, 353, 699
NdeII GATC 2 cut(s) 681, 775
NlaIV GGNNCC 1 cut(s) 36
NmeAIII GCCGAG 2 cut(s) 138, 436
NmuCI GTSAC 1 cut(s) 284
PceI AGGCCT 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 423
PfeI GAWTC 4 cut(s) 245, 398, 419, 511
PkrI GCNGC 1 cut(s) 189
PsiI TTATAA 1 cut(s) 708
Psp6I CCWGG 1 cut(s) 872
PspGI CCWGG 1 cut(s) 872
PspN4I GGNNCC 1 cut(s) 36
PsrI GAACNNNNNNTAC 2 cut(s) 838, 870
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SaqAI TTAA 2 cut(s) 654, 886
SatI GCNGC 1 cut(s) 188
Sau3AI GATC 2 cut(s) 681, 775
ScrFI CCNGG 1 cut(s) 874
SduI GDGCHC 1 cut(s) 37
SfaNI GCATC 1 cut(s) 211
SfcI CTRYAG 1 cut(s) 57
SmlI CTYRAG 2 cut(s) 233, 727
SmoI CTYRAG 2 cut(s) 233, 727
Sse9I AATT 6 cut(s) 365, 538, 628, 806, 815, 849
SseBI AGGCCT 1 cut(s) 456
SsiI CCGC 2 cut(s) 119, 136
SspMI CTAG 1 cut(s) 387
StuI AGGCCT 1 cut(s) 456
StyD4I CCNGG 1 cut(s) 872
TaaI ACNGT 5 cut(s) 278, 492, 714, 760, 882
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 219, 803
TasI AATT 6 cut(s) 365, 538, 628, 806, 815, 849
TatI WGTACW 1 cut(s) 278
TfiI GAWTC 4 cut(s) 245, 398, 419, 511
Tru1I TTAA 2 cut(s) 654, 886
Tru9I TTAA 2 cut(s) 654, 886
TscAI CASTG 4 cut(s) 271, 579, 765, 786
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 5 cut(s) 411, 459, 479, 840, 881
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 4 cut(s) 271, 579, 765, 786
XagI CCTNNNNNAGG 1 cut(s) 236
XapI RAATTY 2 cut(s) 806, 849
XmnI GAANNNNTTC 1 cut(s) 423
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.