Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004571

Physical Location & Seq

Genomic Coordinates Reverse (-)

47136588 .. 47137476

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57956

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGGTTATCCCGGAAATCGACGAAAACGACATCGTCAGCGCCTCCTGGAGATCGAATTCGCTTCTCCGCCGCCTTCTCCACTGCCGGAAAATGCTGTCTCTCACATTAGGCTGAAGTCGGAGGAGAAGGCATTGAAGGTGTTTTGGACGGCTGGGATGAGAGTCAAGATGGCCATGGAGACTGATGACTCGTCCAGGATGACTTGGTTTCAGGGCACTCTGTCTTCTGCCTTTGTTCCGGAGAATGGGCCTTGGAAGGGATCCCCATGGCGTATGCTTCAGAGGATACTACTGTTGTGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

101

Amino Acids

11.77

Weight (kDa)

10.61

Isoelectric Point (pI)

74.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARF_AD	PF06507	37 - 94	9.4e-15	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17710 AT5G17710 AT5G17710
fragaria_vesca	FvH4_1g29620 FvH4_1g29620 FvH4_1g29620 FvH4_1g29620 FvH4_1g29620
malus_domestica	MD12G1014200.v1.1 MD14G1011600.v1.1
prunus_persica	Prupe.7G026500_v2.0.a1 Prupe.7G026500_v2.0.a1 Prupe.7G026500_v2.0.a1 Prupe.7G026500_v2.0.a1
pyrus_communis	pycom12g01190 pycom14g01030
rosa_chinensis	RchiOBHm_Chr1g0353951 RchiOBHm_Chr3g0495651
rosa_laevigata	RLG00000022603
rosa_multiflora	Rmu_sc0003546.1_g000017 Rmu_sc0005747.1_g000034
rosa_roxburghii	Rroxscaffold_6G00390220
rosa_rugosa	Rorug03G0275100 Rorug03G0275100 Rorug03G0275100 Rorug03G0275200
rosa_samantha	Rh3AG322500 Rh3BG357700 Rh3CG354300 Rh3DG357700
rosa_wichuraiana	Rw3G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	2 cut(s)	68, 71
AclWI	GGATC	2 cut(s)	255, 268
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	2 cut(s)	134, 263
AfiI	CCNNNNNNNGG	2 cut(s)	245, 257
AgsI	TTSAA	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	45, 194
Alw26I	GTCTC	2 cut(s)	103, 173
AlwI	GGATC	2 cut(s)	255, 268
Aor13HI	TCCGGA	1 cut(s)	238
AoxI	GGCC	2 cut(s)	171, 248
ApoI	RAATTY	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	248
AsuC2I	CCSGG	1 cut(s)	12
BaeGI	GKGCMC	1 cut(s)	218
BaeI	ACNNNNGTAYC	1 cut(s)	278
BalI	TGGCCA	1 cut(s)	173
BamHI	GGATCC	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	216
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	2 cut(s)	47, 196
BciVI	GTATCC	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	12
BcoDI	GTCTC	2 cut(s)	103, 173
BfoI	RGCGCY	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	279
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
Bme1390I	CCNGG	3 cut(s)	12, 47, 196
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	3 cut(s)	12, 47, 196
BpiI	GAAGAC	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	12
BsaJI	CCNNGG	3 cut(s)	174, 251, 266
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 257
BseAI	TCCGGA	1 cut(s)	238
BseBI	CCWGG	2 cut(s)	47, 196
BseDI	CCNNGG	3 cut(s)	174, 251, 266
BseGI	GGATG	2 cut(s)	162, 204
BseLI	CCNNNNNNNGG	2 cut(s)	245, 257
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	218
BseYI	CCCAGC	1 cut(s)	152
BshFI	GGCC	2 cut(s)	173, 250
BsiSI	CCGG	3 cut(s)	12, 86, 239
BslI	CCNNNNNNNGG	2 cut(s)	245, 257
BsmAI	GTCTC	2 cut(s)	103, 173
BsnI	GGCC	2 cut(s)	173, 250
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	51, 260
Bsp19I	CCATGG	2 cut(s)	174, 266
BspACI	CCGC	2 cut(s)	68, 71
BspANI	GGCC	2 cut(s)	173, 250
BspEI	TCCGGA	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	262
BspPI	GGATC	2 cut(s)	255, 268
BssECI	CCNNGG	3 cut(s)	174, 251, 266
BssMI	GATC	2 cut(s)	51, 260
BssT1I	CCWWGG	3 cut(s)	174, 251, 266
Bst2UI	CCWGG	2 cut(s)	47, 196
Bst4CI	ACNGT	1 cut(s)	294
BstDSI	CCRYGG	2 cut(s)	174, 266
BstF5I	GGATG	2 cut(s)	162, 204
BstH2I	RGCGCY	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	2 cut(s)	54, 263
BstMAI	GTCTC	2 cut(s)	103, 173
BstMBI	GATC	2 cut(s)	51, 260
BstNI	CCWGG	2 cut(s)	47, 196
BstSCI	CCNGG	3 cut(s)	10, 45, 194
BstSLI	GKGCMC	1 cut(s)	218
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BsuI	GTATCC	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	173, 250
BtgI	CCRYGG	2 cut(s)	174, 266
BtsCI	GGATG	2 cut(s)	162, 204
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	80
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	248
CviAII	CATG	2 cut(s)	175, 267
CviJI	RGCY	5 cut(s)	112, 152, 173, 250, 301
CviKI_1	RGCY	5 cut(s)	112, 152, 173, 250, 301
DpnI	GATC	2 cut(s)	53, 262
DpnII	GATC	2 cut(s)	51, 260
EaeI	YGGCCR	1 cut(s)	171
EciI	GGCGGA	1 cut(s)	57
Eco130I	CCWWGG	3 cut(s)	174, 251, 266
Eco57I	CTGAAG	2 cut(s)	134, 263
EcoRI	GAATTC	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	45, 194
EcoT14I	CCWWGG	3 cut(s)	174, 251, 266
ErhI	CCWWGG	3 cut(s)	174, 251, 266
FaeI	CATG	2 cut(s)	178, 270
FaiI	YATR	3 cut(s)	176, 268, 275
FatI	CATG	2 cut(s)	174, 266
Fnu4HI	GCNGC	1 cut(s)	71
FokI	GGATG	2 cut(s)	169, 211
Fsp4HI	GCNGC	1 cut(s)	71
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	1 cut(s)	71
GsaI	CCCAGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	1 cut(s)	43
HaeIII	GGCC	2 cut(s)	173, 250
HapII	CCGG	3 cut(s)	12, 86, 239
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	178, 270
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	2 cut(s)	162, 188
HpaII	CCGG	3 cut(s)	12, 86, 239
Hpy188I	TCNGA	3 cut(s)	121, 282, 305
Hpy188III	TCNNGA	2 cut(s)	166, 239
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	4 cut(s)	84, 121, 130, 250
HpyCH4III	ACNGT	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	178, 270
HspAI	GCGC	1 cut(s)	40
Kpn2I	TCCGGA	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	51, 260
LpnPI	CCDG	9 cut(s)	25, 32, 59, 99, 138, 181, 197, 208, 252
MalI	GATC	2 cut(s)	53, 262
MboI	GATC	2 cut(s)	51, 260
MboII	GAAGA	1 cut(s)	216
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	218
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	1 cut(s)	56
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	171, 182
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	3 cut(s)	53, 115, 276
Mox20I	TGGCCA	1 cut(s)	173
MroI	TCCGGA	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	173
Msp20I	TGGCCA	1 cut(s)	173
MspI	CCGG	3 cut(s)	12, 86, 239
MspR9I	CCNGG	3 cut(s)	12, 47, 196
MvaI	CCWGG	2 cut(s)	47, 196
NciI	CCSGG	1 cut(s)	12
NcoI	CCATGG	2 cut(s)	174, 266
NdeII	GATC	2 cut(s)	51, 260
NlaIII	CATG	2 cut(s)	178, 270
NlaIV	GGNNCC	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	1 cut(s)	25
PflFI	GACNNNGTC	1 cut(s)	33
PfoI	TCCNGGA	3 cut(s)	10, 45, 194
PkrI	GCNGC	1 cut(s)	72
PleI	GAGTC	2 cut(s)	170, 182
PpsI	GAGTC	2 cut(s)	170, 182
Psp6I	CCWGG	2 cut(s)	45, 194
PspFI	CCCAGC	1 cut(s)	152
PspGI	CCWGG	2 cut(s)	45, 194
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	260
PsyI	GACNNNGTC	1 cut(s)	33
SatI	GCNGC	1 cut(s)	71
Sau3AI	GATC	2 cut(s)	51, 260
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	2 cut(s)	171, 182
ScrFI	CCNGG	3 cut(s)	12, 47, 196
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	1 cut(s)	141
Sse9I	AATT	1 cut(s)	56
SsiI	CCGC	2 cut(s)	68, 71
StyD4I	CCNGG	3 cut(s)	10, 45, 194
StyI	CCWWGG	3 cut(s)	174, 251, 266
TaaI	ACNGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	19, 54
TasI	AATT	1 cut(s)	56
TauI	GCSGC	1 cut(s)	73
TscAI	CASTG	1 cut(s)	87
TspRI	CASTG	1 cut(s)	87
Tth111I	GACNNNGTC	1 cut(s)	33
XapI	RAATTY	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.