Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0004571

Physical Location & Seq

Genomic Coordinates Forward (+)

994263 .. 995466

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g01190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAAAGTGGCTTCTTTGTCCGAAGAACTGTCAGCAGAGAGGGTTCGTATTCTGAGAATAAGTGCAGATTTTGACAATTTCCGGAAAAGGACAGAAAGGGAACGCATTTCTCTCGTAACAAATGCTCAGGGGGAAGTTGTGGAGAGTTTGTTGCCTGTAGTGGATAATTTTGAGAGGGCTAAAACCCAGATTAAGGTGGAGACAGAGGGAGAGGAGAAGATCAACAATAGCTATCAGAGCATTTATAAACAGTTCGGAGAGATTTTAAACTCTCTTGGTGTTGTTCCTGTTGAGACAGTGGGGAAGCCCTTTGATCCATTGTTGCATGAAGCAATTATGCGTGAGGACTCTTCAGAATACGAAGAAGGTGTTATAATCGATGAATTTCGCAAGGGGTTTAAGCTTGGTGACAGGCTTTTGCGTCCGTCAATGGTAAAGGTATCGGCTGGTCCAGGTCCTGCCAAGGTAGAGCAGGAAGTACCTCCATCTGAGGAACAGGATGCAAGTGAAACCGCCGAGAAGGGAACCGAGTCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

180

Amino Acids

20.01

Weight (kDa)

4.77

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17710 AT5G17710 AT5G17710
fragaria_vesca	FvH4_1g29620 FvH4_1g29620 FvH4_1g29620 FvH4_1g29620 FvH4_1g29620
malus_domestica	MD12G1014200.v1.1 MD14G1011600.v1.1
prunus_persica	Prupe.7G026500_v2.0.a1 Prupe.7G026500_v2.0.a1 Prupe.7G026500_v2.0.a1 Prupe.7G026500_v2.0.a1
pyrus_communis	pycom12g01190 pycom14g01030
rosa_chinensis	RchiOBHm_Chr1g0353951 RchiOBHm_Chr3g0495651
rosa_laevigata	RLG00000022603
rosa_multiflora	Rmu_sc0003546.1_g000017 Rmu_sc0005747.1_g000034
rosa_roxburghii	Rroxscaffold_6G00390220
rosa_rugosa	Rorug03G0275100 Rorug03G0275100 Rorug03G0275100 Rorug03G0275200
rosa_samantha	Rh3AG322500 Rh3BG357700 Rh3CG354300 Rh3DG357700
rosa_wichuraiana	Rw3G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	246, 374
AccIII	TCCGGA	1 cut(s)	81
AciI	CCGC	1 cut(s)	513
AclWI	GGATC	1 cut(s)	308
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	1 cut(s)	480
AfiI	CCNNNNNNNGG	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	3 cut(s)	231, 403, 536
AluI	AGCT	3 cut(s)	231, 403, 536
Alw26I	GTCTC	2 cut(s)	194, 287
AlwI	GGATC	1 cut(s)	308
AlwNI	CAGNNNCTG	1 cut(s)	458
Aor13HI	TCCGGA	1 cut(s)	81
ApoI	RAATTY	1 cut(s)	383
AspS9I	GGNCC	2 cut(s)	449, 455
AsuHPI	GGTGA	1 cut(s)	419
AvaII	GGWCC	2 cut(s)	449, 455
BccI	CCATC	1 cut(s)	493
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciT130I	CCWGG	1 cut(s)	453
BcoDI	GTCTC	2 cut(s)	194, 287
BfmI	CTRYAG	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	453
Bme18I	GGWCC	2 cut(s)	449, 455
BmgT120I	GGNCC	2 cut(s)	449, 455
BmiI	GGNNCC	1 cut(s)	526
BmrFI	CCNGG	1 cut(s)	453
BmsI	GCATC	1 cut(s)	490
Bpu10I	CCTNAGC	1 cut(s)	126
Bsa29I	ATCGAT	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	462
BsaWI	WCCGGW	1 cut(s)	81
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
BseAI	TCCGGA	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	453
BseCI	ATCGAT	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	3 cut(s)	44, 140, 480
BseRI	GAGGAG	1 cut(s)	227
BsgI	GTGCAG	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	2 cut(s)	194, 287
Bsp13I	TCCGGA	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	219, 313
BspACI	CCGC	1 cut(s)	513
BspCNI	CTCAG	3 cut(s)	45, 139, 481
BspDI	ATCGAT	1 cut(s)	378
BspEI	TCCGGA	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	526
BspPI	GGATC	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	2 cut(s)	219, 313
BssT1I	CCWWGG	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	3 cut(s)	30, 252, 298
Bst6I	CTCTTC	1 cut(s)	355
BstDEI	CTNAG	3 cut(s)	53, 126, 489
BstF5I	GGATG	1 cut(s)	505
BstKTI	GATC	2 cut(s)	222, 316
BstMAI	GTCTC	2 cut(s)	194, 287
BstMBI	GATC	2 cut(s)	219, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNI	CCWGG	1 cut(s)	453
BstSCI	CCNGG	1 cut(s)	451
BstSFI	CTRYAG	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	378
BsuTUI	ATCGAT	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	303
CaiI	CAGNNNCTG	1 cut(s)	458
Cfr13I	GGNCC	2 cut(s)	449, 455
ClaI	ATCGAT	1 cut(s)	378
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	479
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	8 cut(s)	11, 179, 231, 307, 403, 415, 446, 536
CviKI_1	RGCY	8 cut(s)	11, 179, 231, 307, 403, 415, 446, 536
CviQI	GTAC	1 cut(s)	479
DdeI	CTNAG	3 cut(s)	53, 126, 489
DpnI	GATC	2 cut(s)	221, 315
DpnII	GATC	2 cut(s)	219, 313
DraI	TTTAAA	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	462
Eco47I	GGWCC	2 cut(s)	449, 455
Eco57I	CTGAAG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	1 cut(s)	329
FaiI	YATR	4 cut(s)	246, 327, 338, 374
FatI	CATG	1 cut(s)	325
FokI	GGATG	1 cut(s)	512
HapII	CCGG	1 cut(s)	82
HgaI	GACGC	1 cut(s)	410
Hin1II	CATG	1 cut(s)	329
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	2 cut(s)	347, 530
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	1 cut(s)	419
Hpy188I	TCNGA	6 cut(s)	22, 54, 237, 257, 355, 490
Hpy188III	TCNNGA	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	359, 514
HpyCH4III	ACNGT	3 cut(s)	30, 252, 298
HpyCH4V	TGCA	3 cut(s)	65, 325, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpyF3I	CTNAG	3 cut(s)	53, 126, 489
Hsp92II	CATG	1 cut(s)	329
Kpn2I	TCCGGA	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	219, 313
LweI	GCATC	1 cut(s)	490
MaeIII	GTNAC	2 cut(s)	115, 407
MalI	GATC	2 cut(s)	221, 315
MboI	GATC	2 cut(s)	219, 313
MboII	GAAGA	4 cut(s)	35, 229, 342, 374
MluCI	AATT	4 cut(s)	76, 166, 333, 383
MlyI	GAGTC	2 cut(s)	341, 539
MnlI	CCTC	7 cut(s)	33, 168, 199, 205, 337, 484, 492
MroI	TCCGGA	1 cut(s)	81
MseI	TTAA	4 cut(s)	192, 266, 399, 538
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	453
MwoI	GCNNNNNNNGC	1 cut(s)	237
NdeII	GATC	2 cut(s)	219, 313
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	1 cut(s)	526
NmuCI	GTSAC	1 cut(s)	407
PleI	GAGTC	2 cut(s)	341, 538
PpsI	GAGTC	2 cut(s)	341, 538
PpuMI	RGGWCCY	1 cut(s)	455
PsiI	TTATAA	2 cut(s)	246, 374
Psp5II	RGGWCCY	1 cut(s)	455
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	1 cut(s)	526
PspPI	GGNCC	2 cut(s)	449, 455
PspPPI	RGGWCCY	1 cut(s)	455
PstNI	CAGNNNCTG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
SaqAI	TTAA	4 cut(s)	192, 266, 399, 538
Sau3AI	GATC	2 cut(s)	219, 313
Sau96I	GGNCC	2 cut(s)	449, 455
SchI	GAGTC	2 cut(s)	341, 539
ScrFI	CCNGG	1 cut(s)	453
SetI	ASST	9 cut(s)	198, 233, 370, 405, 441, 457, 468, 484, 538
SfaNI	GCATC	1 cut(s)	490
SfcI	CTRYAG	1 cut(s)	156
SinI	GGWCC	2 cut(s)	449, 455
Sse9I	AATT	4 cut(s)	76, 166, 333, 383
SsiI	CCGC	1 cut(s)	513
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	3 cut(s)	30, 252, 298
TaqI	TCGA	1 cut(s)	378
TasI	AATT	4 cut(s)	76, 166, 333, 383
Tru1I	TTAA	4 cut(s)	192, 266, 399, 538
Tru9I	TTAA	4 cut(s)	192, 266, 399, 538
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	407
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	17, 342, 396
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	303
VpaK11BI	GGWCC	2 cut(s)	449, 455
XapI	RAATTY	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.