Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004571

Physical Location & Seq

Genomic Coordinates Reverse (-)

4335477 .. 4342274

Gene Structure 6798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G026500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCCAATGTCCTCCGAACTTCTCCTTTAGGGGCAACTTTTGCACAACTTCCTTCCACTCTCTCGCCAAACTCCCCAAAACCTTCATATGTTTCGTTTAGACAAAGCCAGAGCGGCAGCATACCTTATCTCACTCTAAGCTCTCTCCGGTTCCCTCACTTGCCGTCCCTCCGGTTCGCCAAGTTCGTTCCTTTGGCTTCCCAAGGAGAAACCGAAACTACTGAGACCGTGGAGGAGGTTCGACAGCCCGAAGAGATCGAGGACTCTTCAGATGGTGCAGTAAGTGTGGAAGATAGTACAAGCGACGGCGAAGAAAGTGGTACAAGTAATGATGATGAAGGTGATGCTGAGGAAAAGCCTGTTTCAGCCATCATAGCATCACTGCAATTATACAAAGAAGCTTTGGCCAGTAACGATGAATCAAAAGTAGCTGAGATAGAATCTTTCCTCAAATATATTGAAGATGAGAAAATAAGTCTTGAAAAGAAAGTGGCCTCATTGTCTGAAGAACTGTCAGCAGAGAAGGTTCGGATTCTGAGGATAAGTGCAGATTTTGAAAATTTCCGTAAAAGGACTGATAGGGAACGTATTTCTCTGGTAACAAATGCTCAGGGGGAAGTTGTGGAGAGTTTGTTGCCCGTAGTAGATAATTTTGAGAGGGCTAAAACCCAGATTAAGGTGGAGACAGAAGGAGAGGAGAAGATCAACAATAGCTATCAGAGCATTTATAAACAGTTCGGAGAGATCTTAAGCTCTCTTGGTGTTGTCCCTGTTGAGACAGTGGGGAAGCCCTTTGATCCATTGTTGCATGAAGCAATCATGCGTGAGGACTCCACAGAATTTGAAGAAGGTGTTATAATCGATGAATTTCGCAAGGGGTTTAAGCTTGGTGACAGGCTTTTGCGTCCGTCGATGGTAAAGGTATCAGCTGGTCCTGGGCCTGCCAAGCCAGACCAGCAAGTTCCTCCTTCTGAAGAACAGGATGCCAGTGAAACCACCAAGGAGGGCAGCACAGAAACAGAGTCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

344

Amino Acids

37.72

Weight (kDa)

4.53

Isoelectric Point (pI)

56.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17710 AT5G17710 AT5G17710
fragaria_vesca	FvH4_1g29620 FvH4_1g29620 FvH4_1g29620 FvH4_1g29620 FvH4_1g29620
malus_domestica	MD12G1014200.v1.1 MD14G1011600.v1.1
prunus_persica	Prupe.7G026500_v2.0.a1 Prupe.7G026500_v2.0.a1 Prupe.7G026500_v2.0.a1 Prupe.7G026500_v2.0.a1
pyrus_communis	pycom12g01190 pycom14g01030
rosa_chinensis	RchiOBHm_Chr1g0353951 RchiOBHm_Chr3g0495651
rosa_laevigata	RLG00000022603
rosa_multiflora	Rmu_sc0003546.1_g000017 Rmu_sc0005747.1_g000034
rosa_roxburghii	Rroxscaffold_6G00390220
rosa_rugosa	Rorug03G0275100 Rorug03G0275100 Rorug03G0275100 Rorug03G0275200
rosa_samantha	Rh3AG322500 Rh3BG357700 Rh3CG354300 Rh3DG357700
rosa_wichuraiana	Rw3G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	729, 857
AccBSI	CCGCTC	1 cut(s)	114
AciI	CCGC	1 cut(s)	114
AclWI	GGATC	1 cut(s)	791
AcoI	YGGCCR	2 cut(s)	3, 405
AcsI	RAATTY	3 cut(s)	559, 839, 866
AcuI	CTGAAG	3 cut(s)	252, 525, 993
AfaI	GTAC	2 cut(s)	298, 322
AfiI	CCNNNNNNNGG	1 cut(s)	676
AflII	CTTAAG	1 cut(s)	748
AgsI	TTSAA	4 cut(s)	461, 482, 557, 845
AjnI	CCWGG	1 cut(s)	934
AluBI	AGCT	8 cut(s)	141, 401, 431, 714, 753, 886, 929, 1028
AluI	AGCT	8 cut(s)	141, 401, 431, 714, 753, 886, 929, 1028
Alw26I	GTCTC	3 cut(s)	218, 677, 770
AlwI	GGATC	1 cut(s)	791
AoxI	GGCC	4 cut(s)	3, 405, 492, 938
ApeKI	GCWGC	2 cut(s)	117, 1008
ApoI	RAATTY	3 cut(s)	559, 839, 866
AspS9I	GGNCC	2 cut(s)	932, 938
AsuHPI	GGTGA	2 cut(s)	353, 902
AvaII	GGWCC	1 cut(s)	932
BalI	TGGCCA	2 cut(s)	5, 407
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	129, 1020
BccI	CCATC	3 cut(s)	266, 377, 907
BceAI	ACGGC	2 cut(s)	148, 322
BciT130I	CCWGG	1 cut(s)	936
BcoDI	GTCTC	3 cut(s)	218, 677, 770
BfrI	CTTAAG	1 cut(s)	748
BglI	GCCNNNNNGGC	1 cut(s)	114
BglII	AGATCT	1 cut(s)	744
BisI	GCNGC	3 cut(s)	115, 118, 1009
BlsI	GCNGC	3 cut(s)	116, 119, 1010
Bme1390I	CCNGG	1 cut(s)	936
Bme18I	GGWCC	1 cut(s)	932
BmgT120I	GGNCC	2 cut(s)	932, 938
BmiI	GGNNCC	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	936
BmsI	GCATC	3 cut(s)	334, 386, 973
Bpu10I	CCTNAGC	2 cut(s)	348, 609
Bsa29I	ATCGAT	1 cut(s)	861
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	4 cut(s)	202, 228, 935, 999
BsaWI	WCCGGW	2 cut(s)	147, 171
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse1I	ACTGG	2 cut(s)	408, 987
BseBI	CCWGG	1 cut(s)	936
BseCI	ATCGAT	1 cut(s)	861
BseDI	CCNNGG	4 cut(s)	202, 228, 935, 999
BseGI	GGATG	1 cut(s)	988
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMII	CTCAG	5 cut(s)	213, 339, 423, 527, 623
BseNI	ACTGG	2 cut(s)	408, 987
BseRI	GAGGAG	2 cut(s)	248, 710
BseXI	GCAGC	2 cut(s)	129, 1020
BsgI	GTGCAG	2 cut(s)	297, 567
BshFI	GGCC	4 cut(s)	5, 407, 494, 940
BshVI	ATCGAT	1 cut(s)	861
BsiSI	CCGG	2 cut(s)	148, 172
BslFI	GGGAC	2 cut(s)	151, 752
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmAI	GTCTC	3 cut(s)	218, 677, 770
BsmFI	GGGAC	2 cut(s)	151, 752
BsnI	GGCC	4 cut(s)	5, 407, 494, 940
Bso31I	GGTCTC	1 cut(s)	218
Bsp143I	GATC	4 cut(s)	255, 702, 744, 796
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	4 cut(s)	5, 407, 494, 940
BspCNI	CTCAG	5 cut(s)	214, 340, 424, 528, 622
BspDI	ATCGAT	1 cut(s)	861
BspLI	GGNNCC	1 cut(s)	152
BspPI	GGATC	1 cut(s)	791
BspTI	CTTAAG	1 cut(s)	748
BspTNI	GGTCTC	1 cut(s)	218
BsrBI	CCGCTC	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	408, 987
BssECI	CCNNGG	4 cut(s)	202, 228, 935, 999
BssMI	GATC	4 cut(s)	255, 702, 744, 796
BssT1I	CCWWGG	2 cut(s)	202, 999
Bst2UI	CCWGG	1 cut(s)	936
Bst4CI	ACNGT	4 cut(s)	229, 513, 735, 781
Bst6I	CTCTTC	2 cut(s)	246, 271
BstAFI	CTTAAG	1 cut(s)	748
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	942
BstDEI	CTNAG	6 cut(s)	137, 222, 348, 432, 536, 609
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	988
BstKTI	GATC	4 cut(s)	258, 705, 747, 799
BstMAI	GTCTC	3 cut(s)	218, 677, 770
BstMBI	GATC	4 cut(s)	255, 702, 744, 796
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 114, 374, 720, 946, 955
BstNI	CCWGG	1 cut(s)	936
BstSCI	CCNGG	1 cut(s)	934
BstV1I	GCAGC	2 cut(s)	129, 1020
BstX2I	RGATCY	1 cut(s)	744
BstYI	RGATCY	1 cut(s)	744
Bsu15I	ATCGAT	1 cut(s)	861
BsuRI	GGCC	4 cut(s)	5, 407, 494, 940
BsuTUI	ATCGAT	1 cut(s)	861
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	988
BtsI	GCAGTG	1 cut(s)	380
BtsIMutI	CAGTG	3 cut(s)	380, 786, 994
Cac8I	GCNNGC	1 cut(s)	942
Cfr13I	GGNCC	2 cut(s)	932, 938
ClaI	ATCGAT	1 cut(s)	861
CseI	GACGC	1 cut(s)	893
Csp6I	GTAC	2 cut(s)	297, 321
CspCI	CAANNNNNGTGG	2 cut(s)	823, 858
CviAII	CATG	2 cut(s)	809, 820
CviQI	GTAC	2 cut(s)	297, 321
DdeI	CTNAG	6 cut(s)	137, 222, 348, 432, 536, 609
DpnI	GATC	4 cut(s)	257, 704, 746, 798
DpnII	GATC	4 cut(s)	255, 702, 744, 796
EaeI	YGGCCR	2 cut(s)	3, 405
Eam1104I	CTCTTC	2 cut(s)	246, 271
EarI	CTCTTC	2 cut(s)	246, 271
Eco130I	CCWWGG	2 cut(s)	202, 999
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	932
Eco57I	CTGAAG	3 cut(s)	252, 525, 993
EcoRII	CCWGG	1 cut(s)	934
EcoT14I	CCWWGG	2 cut(s)	202, 999
ErhI	CCWWGG	2 cut(s)	202, 999
FaeI	CATG	2 cut(s)	812, 823
FaqI	GGGAC	2 cut(s)	151, 752
FatI	CATG	2 cut(s)	808, 819
FauNDI	CATATG	1 cut(s)	88
Fnu4HI	GCNGC	3 cut(s)	115, 118, 1009
FokI	GGATG	1 cut(s)	995
Fsp4HI	GCNGC	3 cut(s)	115, 118, 1009
GluI	GCNGC	3 cut(s)	115, 118, 1009
HaeIII	GGCC	4 cut(s)	5, 407, 494, 940
HapII	CCGG	2 cut(s)	148, 172
HgaI	GACGC	1 cut(s)	893
Hin1II	CATG	2 cut(s)	812, 823
HindIII	AAGCTT	2 cut(s)	399, 884
HinfI	GANTC	6 cut(s)	263, 419, 440, 532, 830, 1022
HpaII	CCGG	2 cut(s)	148, 172
HphI	GGTGA	2 cut(s)	353, 902
Hpy188I	TCNGA	8 cut(s)	17, 271, 505, 531, 537, 720, 740, 973
Hpy188III	TCNNGA	1 cut(s)	479
Hpy99I	CGWCG	2 cut(s)	308, 913
HpyAV	CCTTC	7 cut(s)	63, 93, 332, 517, 683, 842, 978
HpyCH4III	ACNGT	4 cut(s)	229, 513, 735, 781
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	5 cut(s)	44, 278, 385, 548, 808
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 114, 374, 720, 946, 955
HpyF3I	CTNAG	6 cut(s)	137, 222, 348, 432, 536, 609
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	2 cut(s)	812, 823
Kzo9I	GATC	4 cut(s)	255, 702, 744, 796
Lsp1109I	GCAGC	2 cut(s)	129, 1020
LweI	GCATC	3 cut(s)	334, 386, 973
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	3 cut(s)	410, 598, 890
MalI	GATC	4 cut(s)	257, 704, 746, 798
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	4 cut(s)	255, 702, 744, 796
MboII	GAAGA	9 cut(s)	258, 263, 302, 323, 473, 518, 712, 857, 986
MflI	RGATCY	1 cut(s)	744
MlsI	TGGCCA	2 cut(s)	5, 407
MluCI	AATT	5 cut(s)	386, 559, 649, 839, 866
MluNI	TGGCCA	2 cut(s)	5, 407
MlyI	GAGTC	3 cut(s)	257, 824, 1031
Mox20I	TGGCCA	2 cut(s)	5, 407
MscI	TGGCCA	2 cut(s)	5, 407
MseI	TTAA	4 cut(s)	675, 749, 882, 1030
Msp20I	TGGCCA	2 cut(s)	5, 407
MspA1I	CMGCKG	1 cut(s)	929
MspCI	CTTAAG	1 cut(s)	748
MspI	CCGG	2 cut(s)	148, 172
MspR9I	CCNGG	1 cut(s)	936
MvaI	CCWGG	1 cut(s)	936
MwoI	GCNNNNNNNGC	6 cut(s)	41, 114, 374, 720, 946, 955
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	4 cut(s)	255, 702, 744, 796
NlaIII	CATG	2 cut(s)	812, 823
NlaIV	GGNNCC	1 cut(s)	152
NmuCI	GTSAC	1 cut(s)	890
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	3 cut(s)	419, 440, 532
PkrI	GCNGC	3 cut(s)	116, 119, 1010
PleI	GAGTC	3 cut(s)	257, 824, 1030
PpsI	GAGTC	3 cut(s)	257, 824, 1030
PsiI	TTATAA	2 cut(s)	729, 857
Psp6I	CCWGG	1 cut(s)	934
PspGI	CCWGG	1 cut(s)	934
PspN4I	GGNNCC	1 cut(s)	152
PspPI	GGNCC	2 cut(s)	932, 938
PsuI	RGATCY	1 cut(s)	744
PvuII	CAGCTG	1 cut(s)	929
RsaI	GTAC	2 cut(s)	298, 322
RsaNI	GTAC	2 cut(s)	297, 321
SaqAI	TTAA	4 cut(s)	675, 749, 882, 1030
SatI	GCNGC	3 cut(s)	115, 118, 1009
Sau3AI	GATC	4 cut(s)	255, 702, 744, 796
Sau96I	GGNCC	2 cut(s)	932, 938
SchI	GAGTC	3 cut(s)	257, 824, 1031
ScrFI	CCNGG	1 cut(s)	936
SfaNI	GCATC	3 cut(s)	334, 386, 973
SinI	GGWCC	1 cut(s)	932
SmlI	CTYRAG	1 cut(s)	748
SmoI	CTYRAG	1 cut(s)	748
Sse9I	AATT	5 cut(s)	386, 559, 649, 839, 866
SsiI	CCGC	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	934
StyI	CCWWGG	2 cut(s)	202, 999
TaaI	ACNGT	4 cut(s)	229, 513, 735, 781
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	4 cut(s)	241, 258, 861, 911
TasI	AATT	5 cut(s)	386, 559, 649, 839, 866
TatI	WGTACW	1 cut(s)	296
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	3 cut(s)	419, 440, 532
Tru1I	TTAA	4 cut(s)	675, 749, 882, 1030
Tru9I	TTAA	4 cut(s)	675, 749, 882, 1030
TscAI	CASTG	3 cut(s)	387, 786, 994
TseFI	GTSAC	1 cut(s)	890
TseI	GCWGC	2 cut(s)	117, 1008
Tsp45I	GTSAC	1 cut(s)	890
TspDTI	ATGAA	5 cut(s)	75, 351, 432, 825, 879
TspGWI	ACGGA	2 cut(s)	554, 897
TspRI	CASTG	3 cut(s)	387, 786, 994
Vha464I	CTTAAG	1 cut(s)	748
VpaK11BI	GGWCC	1 cut(s)	932
XapI	RAATTY	3 cut(s)	559, 839, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.