Rh3BG357700

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0004571
Physical Location & Seq
Reverse (-)
42795982 .. 42799950
3969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG357700.1

Sequence Viewer

Length: 984 bp
ATGGCCAATGTCCTCCGAAGTTCAGCGTTGAGGGCACCATTGGCTCCGCTTCCAACAGCTGTCTCGCCCAACTCTCCCAAACCCTTTTACGTTTCGTTTAGACGACAAAGGCACCCCATTCTCCGCTTCTCTCACTTGCCCTCCCTCCGCCTCCTCGTGCCTTTCGCTTCCCACAACCAGCACGGTGAAACCCTCGATGCAGAGGAGCTTGAGGAGGATTCCTTAGACGGGGCAGTTAGTGTGGAAGATAGTACAAGTGATGCTGAAGAAAGTGGTACAAGTGATGATGGGGAAGGTGATGACAAAAAACCTGTTTCAGCCATCATAGCGTCACTACAATTATACAAAGAAGCTTTAGCCAGTAATGATGAATCAAAAGTAGCCGAGATTGAATCTTTTCTAAAATCTGTTGAAGATGAAAAAATAGACCTTGAAAGGAAAGTGGCTTCTTTGTCTGAAGAACTGTCAGCAGGGAAGGTTCGGATTCTGAGGATTAGTGCAGACTTTGATAATTTCCGGAAAAGGACAGATAGAGAACGCATTTCACTGGTAACTAATGCTCAGGGGGAAGTTGTGGAGAGCTTGTTGGGTGTATTGGATAATTTTGAGAGGGCTAAAGCCCAGATTAAGGTGGAGACAGAGGGAGAGGAGAAGATCAACAATAGCTATCAGAGCATTTATAAACAGTTTGGAGAAATCTTAAGTTCACTTGGCGTTCTCCTGGTGGAGACAGTGGGGAAGCCCTTTGATCCGTTGTTGCATGAAGCAATTATGCGTGAGGAGTCTTCAGAATTTGAAGAAGGTATTATACTAGATGAATTTCGCAAGGGGTTTAAGCTTGGTGACAGGCTTCTGCGTCCATCAATGGTAAAGGTATCAGCTGGTCCAGGGCCTGCCAAGCCAGAGCAGCAAGTAGCTCCATCTGAGGAACATGATGCAAGTGAAGCGACCAAGGAGGACATCACAGAAACTGAGTCGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GrpE

Protein Analysis

327

Amino Acids

36.06

Weight (kDa)

4.72

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GrpE PF01025 138 - 293 2e-39 GrpE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 681
AccB1I GGYRCC 2 cut(s) 34, 111
AccIII TCCGGA 1 cut(s) 516
AciI CCGC 3 cut(s) 47, 124, 148
AclWI GGATC 1 cut(s) 743
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 791, 818
AcuI CTGAAG 3 cut(s) 285, 477, 771
AfaI GTAC 2 cut(s) 253, 277
AfiI CCNNNNNNNGG 2 cut(s) 228, 628
AflII CTTAAG 1 cut(s) 700
AgsI TTSAA 4 cut(s) 392, 413, 434, 797
AjnI CCWGG 2 cut(s) 720, 886
AluBI AGCT 8 cut(s) 59, 208, 353, 582, 666, 838, 881, 917
AluI AGCT 8 cut(s) 59, 208, 353, 582, 666, 838, 881, 917
Alw26I GTCTC 3 cut(s) 67, 629, 722
AlwI GGATC 1 cut(s) 743
AlwNI CAGNNNCTG 2 cut(s) 893, 971
Aor13HI TCCGGA 1 cut(s) 516
AoxI GGCC 2 cut(s) 3, 890
ApeKI GCWGC 1 cut(s) 907
ApoI RAATTY 2 cut(s) 791, 818
Asp700I GAANNNNTTC 1 cut(s) 396
AspS9I GGNCC 2 cut(s) 884, 890
AsuHPI GGTGA 3 cut(s) 197, 308, 854
AvaII GGWCC 1 cut(s) 884
BaeGI GKGCMC 1 cut(s) 37
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 34, 111
BarI GAAGNNNNNNTAC 2 cut(s) 792, 824
BauI CACGAG 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 777
BbvI GCAGC 1 cut(s) 919
BccI CCATC 4 cut(s) 281, 329, 868, 928
BciT130I CCWGG 2 cut(s) 722, 888
BcoDI GTCTC 3 cut(s) 67, 629, 722
BfaI CTAG 1 cut(s) 812
BfrI CTTAAG 1 cut(s) 700
BisI GCNGC 1 cut(s) 908
BlsI GCNGC 1 cut(s) 909
Bme1390I CCNGG 2 cut(s) 722, 888
Bme18I GGWCC 1 cut(s) 884
BmgT120I GGNCC 2 cut(s) 884, 890
BmiI GGNNCC 3 cut(s) 36, 45, 113
BmrFI CCNGG 2 cut(s) 722, 888
BmsI GCATC 3 cut(s) 187, 250, 925
BpiI GAAGAC 1 cut(s) 777
Bpu10I CCTNAGC 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 887, 951
BsaWI WCCGGW 1 cut(s) 516
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 569, 599
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 628
Bse1I ACTGG 2 cut(s) 360, 552
BseAI TCCGGA 1 cut(s) 516
BseBI CCWGG 2 cut(s) 722, 888
BseDI CCNNGG 2 cut(s) 887, 951
BseLI CCNNNNNNNGG 2 cut(s) 228, 628
BseMII CTCAG 4 cut(s) 479, 575, 915, 963
BseNI ACTGG 2 cut(s) 360, 552
BseRI GAGGAG 5 cut(s) 143, 218, 227, 662, 794
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 1 cut(s) 919
BsgI GTGCAG 1 cut(s) 519
BshFI GGCC 2 cut(s) 5, 892
BshNI GGYRCC 2 cut(s) 34, 111
BsiSI CCGG 1 cut(s) 517
BslI CCNNNNNNNGG 2 cut(s) 228, 628
BsmAI GTCTC 3 cut(s) 67, 629, 722
BsnI GGCC 2 cut(s) 5, 892
Bsp1286I GDGCHC 1 cut(s) 37
Bsp13I TCCGGA 1 cut(s) 516
Bsp143I GATC 2 cut(s) 654, 748
BspACI CCGC 3 cut(s) 47, 124, 148
BspANI GGCC 2 cut(s) 5, 892
BspCNI CTCAG 4 cut(s) 480, 574, 916, 964
BspEI TCCGGA 1 cut(s) 516
BspLI GGNNCC 3 cut(s) 36, 45, 113
BspPI GGATC 1 cut(s) 743
BspT107I GGYRCC 2 cut(s) 34, 111
BspTI CTTAAG 1 cut(s) 700
BsrI ACTGG 2 cut(s) 360, 552
BssECI CCNNGG 2 cut(s) 887, 951
BssMI GATC 2 cut(s) 654, 748
BssSI CACGAG 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 951
Bst2BI CACGAG 1 cut(s) 155
Bst2UI CCWGG 2 cut(s) 722, 888
Bst4CI ACNGT 4 cut(s) 185, 465, 687, 733
BstAFI CTTAAG 1 cut(s) 700
BstC8I GCNNGC 1 cut(s) 894
BstDEI CTNAG 5 cut(s) 223, 488, 561, 924, 972
BstKTI GATC 2 cut(s) 657, 751
BstMAI GTCTC 3 cut(s) 67, 629, 722
BstMBI GATC 2 cut(s) 654, 748
BstMWI GCNNNNNNNGC 7 cut(s) 32, 41, 326, 672, 898, 907, 944
BstNI CCWGG 2 cut(s) 722, 888
BstSCI CCNGG 2 cut(s) 720, 886
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 919
BstV2I GAAGAC 1 cut(s) 777
BsuRI GGCC 2 cut(s) 5, 892
BtsIMutI CAGTG 2 cut(s) 545, 738
Cac8I GCNNGC 1 cut(s) 894
CaiI CAGNNNCTG 2 cut(s) 893, 971
Cfr13I GGNCC 2 cut(s) 884, 890
CseI GACGC 2 cut(s) 318, 845
Csp6I GTAC 2 cut(s) 252, 276
CviAII CATG 2 cut(s) 761, 932
CviQI GTAC 2 cut(s) 252, 276
DdeI CTNAG 5 cut(s) 223, 488, 561, 924, 972
DpnI GATC 2 cut(s) 656, 750
DpnII GATC 2 cut(s) 654, 748
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 951
Eco47I GGWCC 1 cut(s) 884
Eco57I CTGAAG 3 cut(s) 285, 477, 771
EcoO109I RGGNCCY 1 cut(s) 890
EcoRII CCWGG 2 cut(s) 720, 886
EcoT14I CCWWGG 1 cut(s) 951
ErhI CCWWGG 1 cut(s) 951
FaeI CATG 2 cut(s) 764, 935
FaiI YATR 7 cut(s) 326, 343, 681, 762, 773, 809, 933
FatI CATG 2 cut(s) 760, 931
Fnu4HI GCNGC 1 cut(s) 908
Fsp4HI GCNGC 1 cut(s) 908
FspBI CTAG 1 cut(s) 812
GluI GCNGC 1 cut(s) 908
HaeIII GGCC 2 cut(s) 5, 892
HapII CCGG 1 cut(s) 517
HgaI GACGC 2 cut(s) 318, 845
Hin1II CATG 2 cut(s) 764, 935
HindIII AAGCTT 2 cut(s) 351, 836
HinfI GANTC 6 cut(s) 218, 371, 392, 484, 782, 974
HpaII CCGG 1 cut(s) 517
HphI GGTGA 3 cut(s) 197, 308, 854
Hpy166II GTNNAC 1 cut(s) 707
Hpy188I TCNGA 7 cut(s) 17, 457, 483, 489, 672, 790, 925
Hpy188III TCNNGA 1 cut(s) 517
Hpy8I GTNNAC 1 cut(s) 707
HpyAV CCTTC 3 cut(s) 287, 469, 794
HpyCH4III ACNGT 4 cut(s) 185, 465, 687, 733
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 4 cut(s) 200, 500, 760, 938
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 41, 326, 672, 898, 907, 944
HpyF3I CTNAG 5 cut(s) 223, 488, 561, 924, 972
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 2 cut(s) 764, 935
Kpn2I TCCGGA 1 cut(s) 516
Kzo9I GATC 2 cut(s) 654, 748
LmnI GCTCC 3 cut(s) 49, 205, 922
Lsp1109I GCAGC 1 cut(s) 919
LweI GCATC 3 cut(s) 187, 250, 925
MaeI CTAG 1 cut(s) 812
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 3 cut(s) 330, 550, 842
MalI GATC 2 cut(s) 656, 750
MboI GATC 2 cut(s) 654, 748
MboII GAAGA 7 cut(s) 257, 278, 425, 470, 664, 777, 809
MhlI GDGCHC 1 cut(s) 37
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 338, 511, 601, 768, 791, 818
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 791, 983
MmeI TCCRAC 1 cut(s) 77
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 516
MroXI GAANNNNTTC 1 cut(s) 396
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 627, 701, 834, 982
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 59, 881
MspCI CTTAAG 1 cut(s) 700
MspI CCGG 1 cut(s) 517
MspR9I CCNGG 2 cut(s) 722, 888
MvaI CCWGG 2 cut(s) 722, 888
MwoI GCNNNNNNNGC 7 cut(s) 32, 41, 326, 672, 898, 907, 944
NdeII GATC 2 cut(s) 654, 748
NlaIII CATG 2 cut(s) 764, 935
NlaIV GGNNCC 3 cut(s) 36, 45, 113
NmeAIII GCCGAG 1 cut(s) 409
NmuCI GTSAC 2 cut(s) 330, 842
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 4 cut(s) 218, 371, 392, 484
PkrI GCNGC 1 cut(s) 909
PleI GAGTC 2 cut(s) 790, 982
PpsI GAGTC 2 cut(s) 790, 982
PsiI TTATAA 1 cut(s) 681
Psp6I CCWGG 2 cut(s) 720, 886
PspGI CCWGG 2 cut(s) 720, 886
PspN4I GGNNCC 3 cut(s) 36, 45, 113
PspPI GGNCC 2 cut(s) 884, 890
PstNI CAGNNNCTG 2 cut(s) 893, 971
PvuII CAGCTG 2 cut(s) 59, 881
RsaI GTAC 2 cut(s) 253, 277
RsaNI GTAC 2 cut(s) 252, 276
SaqAI TTAA 4 cut(s) 627, 701, 834, 982
SatI GCNGC 1 cut(s) 908
Sau3AI GATC 2 cut(s) 654, 748
Sau96I GGNCC 2 cut(s) 884, 890
SchI GAGTC 2 cut(s) 791, 983
ScrFI CCNGG 2 cut(s) 722, 888
SduI GDGCHC 1 cut(s) 37
SfaNI GCATC 3 cut(s) 187, 250, 925
SinI GGWCC 1 cut(s) 884
SmlI CTYRAG 2 cut(s) 209, 700
SmoI CTYRAG 2 cut(s) 209, 700
Sse9I AATT 6 cut(s) 338, 511, 601, 768, 791, 818
SsiI CCGC 3 cut(s) 47, 124, 148
SspMI CTAG 1 cut(s) 812
StyD4I CCNGG 2 cut(s) 720, 886
StyI CCWWGG 1 cut(s) 951
TaaI ACNGT 4 cut(s) 185, 465, 687, 733
TaiI ACGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 195
TasI AATT 6 cut(s) 338, 511, 601, 768, 791, 818
TatI WGTACW 1 cut(s) 251
TfiI GAWTC 4 cut(s) 218, 371, 392, 484
Tru1I TTAA 4 cut(s) 627, 701, 834, 982
Tru9I TTAA 4 cut(s) 627, 701, 834, 982
TscAI CASTG 2 cut(s) 552, 738
TseFI GTSAC 2 cut(s) 330, 842
TseI GCWGC 1 cut(s) 907
Tsp45I GTSAC 2 cut(s) 330, 842
TspDTI ATGAA 4 cut(s) 384, 432, 777, 831
TspGWI ACGGA 1 cut(s) 741
TspRI CASTG 2 cut(s) 552, 738
Vha464I CTTAAG 1 cut(s) 700
VpaK11BI GGWCC 1 cut(s) 884
XapI RAATTY 2 cut(s) 791, 818
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.