Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003546.1

Orthogroup ID

OG0004571

Physical Location & Seq

Genomic Coordinates Forward (+)

82216 .. 86796

Gene Structure 4581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003546.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atggccaatgtcctccgaagttcggcgttgagggcaccattggctccgcttccaacagctgtctcgcccaactctcccaaacccttttacgtttcgtttagacgacagaggcatcccattctccgcttctctcacttgccctccctccgcctcctcgtgcctttcgcttcccacaacaagcacggtgaaaccgatgctacggacaccctcgatgcagaggagcttgaggaggattccttagacggggcagttagtgtggaagatagtacaagtgatgctgaagaaagtggtacaagtgatgatggggaaggtgatgacaaaaaacctgtttcagccatcatagcgtcactacaattatacaaagaagctttagccagtaatgatgaatcaaaagtagccgagattgaatcttttctaaaatctgttgaagatgaaaaaatagaccttgaaaggaaagtggcttctttgtctgaagaactgtcagcagggaaggttcggattctgaggattagtgcagactttgataatttccggaaaaggacagatagagaacgcatttcactggtaactaatgctcagggggaagttgtggagagcttgttgggtgtattggataattttgagagggctaaagcccagattaaggtggagacagagggagaggagaagatcaacaatagctatcagagcatttataaacagtttggagaaatcttaagttcacttggcgttctcccggtggagacagtggggaagccctttgatccgttgttgcatgaagcaattatgcgtgaggagtcttcagaatttgaagaaggtattatactagatgaatttcgcaaggggtttaagcttggtgacaggcttctgcgtccatcaatggtaaaggtatcagctggtccagggcctgccaagccagagcagcaagtagctccatctgaggaacatgatgcaagtgaagcgaccaaggaggacatcacagaggagtgcattctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

332

Amino Acids

36.62

Weight (kDa)

4.7

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17710 AT5G17710 AT5G17710
fragaria_vesca	FvH4_1g29620 FvH4_1g29620 FvH4_1g29620 FvH4_1g29620 FvH4_1g29620
malus_domestica	MD12G1014200.v1.1 MD14G1011600.v1.1
prunus_persica	Prupe.7G026500_v2.0.a1 Prupe.7G026500_v2.0.a1 Prupe.7G026500_v2.0.a1 Prupe.7G026500_v2.0.a1
pyrus_communis	pycom12g01190 pycom14g01030
rosa_chinensis	RchiOBHm_Chr1g0353951 RchiOBHm_Chr3g0495651
rosa_laevigata	RLG00000022603
rosa_multiflora	Rmu_sc0003546.1_g000017 Rmu_sc0005747.1_g000034
rosa_roxburghii	Rroxscaffold_6G00390220
rosa_rugosa	Rorug03G0275100 Rorug03G0275100 Rorug03G0275100 Rorug03G0275200
rosa_samantha	Rh3AG322500 Rh3BG357700 Rh3CG354300 Rh3DG357700
rosa_wichuraiana	Rw3G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
AccB1I	GGYRCC	1 cut(s)	34
AccIII	TCCGGA	1 cut(s)	531
AciI	CCGC	3 cut(s)	47, 124, 148
AclWI	GGATC	1 cut(s)	758
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	806, 833
AcuI	CTGAAG	3 cut(s)	300, 492, 786
AfaI	GTAC	2 cut(s)	268, 292
AfiI	CCNNNNNNNGG	3 cut(s)	22, 243, 643
AflII	CTTAAG	1 cut(s)	715
AgsI	TTSAA	4 cut(s)	407, 428, 449, 812
AjnI	CCWGG	1 cut(s)	901
AluBI	AGCT	8 cut(s)	59, 223, 368, 597, 681, 853, 896, 932
AluI	AGCT	8 cut(s)	59, 223, 368, 597, 681, 853, 896, 932
Alw26I	GTCTC	3 cut(s)	67, 644, 737
AlwI	GGATC	1 cut(s)	758
AlwNI	CAGNNNCTG	1 cut(s)	908
Aor13HI	TCCGGA	1 cut(s)	531
AoxI	GGCC	2 cut(s)	3, 905
ApeKI	GCWGC	1 cut(s)	922
ApoI	RAATTY	2 cut(s)	806, 833
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	2 cut(s)	899, 905
AsuC2I	CCSGG	1 cut(s)	737
AsuHPI	GGTGA	3 cut(s)	197, 323, 869
AvaII	GGWCC	1 cut(s)	899
BaeGI	GKGCMC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	34
BarI	GAAGNNNNNNTAC	2 cut(s)	807, 839
BauI	CACGAG	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	792
BbvI	GCAGC	1 cut(s)	934
BccI	CCATC	4 cut(s)	296, 344, 883, 943
BciT130I	CCWGG	1 cut(s)	903
BcnI	CCSGG	1 cut(s)	737
BcoDI	GTCTC	3 cut(s)	67, 644, 737
BfaI	CTAG	1 cut(s)	827
BfrI	CTTAAG	1 cut(s)	715
BisI	GCNGC	1 cut(s)	923
BlsI	GCNGC	1 cut(s)	924
Bme1390I	CCNGG	2 cut(s)	737, 903
Bme18I	GGWCC	1 cut(s)	899
BmgT120I	GGNCC	2 cut(s)	899, 905
BmiI	GGNNCC	2 cut(s)	36, 45
BmrFI	CCNGG	2 cut(s)	737, 903
BmsI	GCATC	5 cut(s)	121, 184, 202, 265, 940
BpiI	GAAGAC	1 cut(s)	792
Bpu10I	CCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	737
BsaJI	CCNNGG	2 cut(s)	902, 966
BsaWI	WCCGGW	1 cut(s)	531
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 584, 614
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 243, 643
Bse1I	ACTGG	2 cut(s)	375, 567
BseAI	TCCGGA	1 cut(s)	531
BseBI	CCWGG	1 cut(s)	903
BseDI	CCNNGG	2 cut(s)	902, 966
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	3 cut(s)	22, 243, 643
BseMII	CTCAG	3 cut(s)	494, 590, 930
BseNI	ACTGG	2 cut(s)	375, 567
BseRI	GAGGAG	6 cut(s)	143, 233, 242, 677, 809, 998
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	934
BsgI	GTGCAG	1 cut(s)	534
BshFI	GGCC	2 cut(s)	5, 907
BshNI	GGYRCC	1 cut(s)	34
BsiSI	CCGG	2 cut(s)	532, 737
BslI	CCNNNNNNNGG	3 cut(s)	22, 243, 643
BsmAI	GTCTC	3 cut(s)	67, 644, 737
BsmI	GAATGC	1 cut(s)	990
BsnI	GGCC	2 cut(s)	5, 907
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp13I	TCCGGA	1 cut(s)	531
Bsp143I	GATC	2 cut(s)	669, 763
BspACI	CCGC	3 cut(s)	47, 124, 148
BspANI	GGCC	2 cut(s)	5, 907
BspCNI	CTCAG	3 cut(s)	495, 589, 931
BspEI	TCCGGA	1 cut(s)	531
BspLI	GGNNCC	2 cut(s)	36, 45
BspPI	GGATC	1 cut(s)	758
BspT107I	GGYRCC	1 cut(s)	34
BspTI	CTTAAG	1 cut(s)	715
BsrI	ACTGG	2 cut(s)	375, 567
BssECI	CCNNGG	2 cut(s)	902, 966
BssMI	GATC	2 cut(s)	669, 763
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	966
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	903
Bst4CI	ACNGT	4 cut(s)	185, 480, 702, 748
BstAFI	CTTAAG	1 cut(s)	715
BstC8I	GCNNGC	1 cut(s)	909
BstDEI	CTNAG	4 cut(s)	238, 503, 576, 939
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	2 cut(s)	672, 766
BstMAI	GTCTC	3 cut(s)	67, 644, 737
BstMBI	GATC	2 cut(s)	669, 763
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 41, 341, 687, 913, 922, 959
BstNI	CCWGG	1 cut(s)	903
BstSCI	CCNGG	2 cut(s)	735, 901
BstSLI	GKGCMC	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	934
BstV2I	GAAGAC	1 cut(s)	792
BsuRI	GGCC	2 cut(s)	5, 907
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	560, 753
Cac8I	GCNNGC	1 cut(s)	909
CaiI	CAGNNNCTG	1 cut(s)	908
Cfr13I	GGNCC	2 cut(s)	899, 905
CseI	GACGC	2 cut(s)	333, 860
Csp6I	GTAC	2 cut(s)	267, 291
CviAII	CATG	2 cut(s)	776, 947
CviQI	GTAC	2 cut(s)	267, 291
DdeI	CTNAG	4 cut(s)	238, 503, 576, 939
DpnI	GATC	2 cut(s)	671, 765
DpnII	GATC	2 cut(s)	669, 763
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	966
Eco47I	GGWCC	1 cut(s)	899
Eco57I	CTGAAG	3 cut(s)	300, 492, 786
EcoO109I	RGGNCCY	1 cut(s)	905
EcoRII	CCWGG	1 cut(s)	901
EcoT14I	CCWWGG	1 cut(s)	966
ErhI	CCWWGG	1 cut(s)	966
FaeI	CATG	2 cut(s)	779, 950
FaiI	YATR	7 cut(s)	341, 358, 696, 777, 788, 824, 948
FatI	CATG	2 cut(s)	775, 946
Fnu4HI	GCNGC	1 cut(s)	923
FokI	GGATG	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	923
FspBI	CTAG	1 cut(s)	827
GluI	GCNGC	1 cut(s)	923
HaeIII	GGCC	2 cut(s)	5, 907
HapII	CCGG	2 cut(s)	532, 737
HgaI	GACGC	2 cut(s)	333, 860
Hin1II	CATG	2 cut(s)	779, 950
HindIII	AAGCTT	2 cut(s)	366, 851
HinfI	GANTC	5 cut(s)	233, 386, 407, 499, 797
HpaII	CCGG	2 cut(s)	532, 737
HphI	GGTGA	3 cut(s)	197, 323, 869
Hpy166II	GTNNAC	1 cut(s)	722
Hpy188I	TCNGA	7 cut(s)	17, 472, 498, 504, 687, 805, 940
Hpy188III	TCNNGA	1 cut(s)	532
Hpy8I	GTNNAC	1 cut(s)	722
HpyAV	CCTTC	3 cut(s)	302, 484, 809
HpyCH4III	ACNGT	4 cut(s)	185, 480, 702, 748
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	5 cut(s)	215, 515, 775, 953, 990
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 41, 341, 687, 913, 922, 959
HpyF3I	CTNAG	4 cut(s)	238, 503, 576, 939
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	779, 950
Kpn2I	TCCGGA	1 cut(s)	531
Kzo9I	GATC	2 cut(s)	669, 763
LmnI	GCTCC	3 cut(s)	49, 220, 937
Lsp1109I	GCAGC	1 cut(s)	934
LweI	GCATC	5 cut(s)	121, 184, 202, 265, 940
MaeI	CTAG	1 cut(s)	827
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	3 cut(s)	345, 565, 857
MalI	GATC	2 cut(s)	671, 765
MboI	GATC	2 cut(s)	669, 763
MboII	GAAGA	7 cut(s)	272, 293, 440, 485, 679, 792, 824
MhlI	GDGCHC	1 cut(s)	37
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	353, 526, 616, 783, 806, 833
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	806
MmeI	TCCRAC	1 cut(s)	77
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	531
MroXI	GAANNNNTTC	1 cut(s)	411
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	642, 716, 849
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	59, 896
MspCI	CTTAAG	1 cut(s)	715
MspI	CCGG	2 cut(s)	532, 737
MspR9I	CCNGG	2 cut(s)	737, 903
Mva1269I	GAATGC	1 cut(s)	990
MvaI	CCWGG	1 cut(s)	903
MwoI	GCNNNNNNNGC	7 cut(s)	32, 41, 341, 687, 913, 922, 959
NciI	CCSGG	1 cut(s)	737
NdeII	GATC	2 cut(s)	669, 763
NlaIII	CATG	2 cut(s)	779, 950
NlaIV	GGNNCC	2 cut(s)	36, 45
NmeAIII	GCCGAG	1 cut(s)	424
NmuCI	GTSAC	2 cut(s)	345, 857
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PctI	GAATGC	1 cut(s)	990
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	4 cut(s)	233, 386, 407, 499
PkrI	GCNGC	1 cut(s)	924
PleI	GAGTC	1 cut(s)	805
PpsI	GAGTC	1 cut(s)	805
PsiI	TTATAA	1 cut(s)	696
Psp6I	CCWGG	1 cut(s)	901
PspGI	CCWGG	1 cut(s)	901
PspN4I	GGNNCC	2 cut(s)	36, 45
PspPI	GGNCC	2 cut(s)	899, 905
PstNI	CAGNNNCTG	1 cut(s)	908
PvuII	CAGCTG	2 cut(s)	59, 896
RsaI	GTAC	2 cut(s)	268, 292
RsaNI	GTAC	2 cut(s)	267, 291
SaqAI	TTAA	3 cut(s)	642, 716, 849
SatI	GCNGC	1 cut(s)	923
Sau3AI	GATC	2 cut(s)	669, 763
Sau96I	GGNCC	2 cut(s)	899, 905
SchI	GAGTC	1 cut(s)	806
ScrFI	CCNGG	2 cut(s)	737, 903
SduI	GDGCHC	1 cut(s)	37
SfaNI	GCATC	5 cut(s)	121, 184, 202, 265, 940
SinI	GGWCC	1 cut(s)	899
SmlI	CTYRAG	2 cut(s)	224, 715
SmoI	CTYRAG	2 cut(s)	224, 715
Sse9I	AATT	6 cut(s)	353, 526, 616, 783, 806, 833
SsiI	CCGC	3 cut(s)	47, 124, 148
SspMI	CTAG	1 cut(s)	827
StyD4I	CCNGG	2 cut(s)	735, 901
StyI	CCWWGG	1 cut(s)	966
TaaI	ACNGT	4 cut(s)	185, 480, 702, 748
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	210
TasI	AATT	6 cut(s)	353, 526, 616, 783, 806, 833
TatI	WGTACW	1 cut(s)	266
TfiI	GAWTC	4 cut(s)	233, 386, 407, 499
Tru1I	TTAA	3 cut(s)	642, 716, 849
Tru9I	TTAA	3 cut(s)	642, 716, 849
TscAI	CASTG	2 cut(s)	567, 753
TseFI	GTSAC	2 cut(s)	345, 857
TseI	GCWGC	1 cut(s)	922
Tsp45I	GTSAC	2 cut(s)	345, 857
TspDTI	ATGAA	4 cut(s)	399, 447, 792, 846
TspGWI	ACGGA	2 cut(s)	215, 756
TspRI	CASTG	2 cut(s)	567, 753
Vha464I	CTTAAG	1 cut(s)	715
VpaK11BI	GGWCC	1 cut(s)	899
XapI	RAATTY	2 cut(s)	806, 833
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	1 cut(s)	827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.