Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013603

Physical Location & Seq

Genomic Coordinates Forward (+)

3314937 .. 3316078

Gene Structure 1142 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAACCACAAGCAGATCAAGTCAACAAGATTTTGTGATCTTCCAGATGAAGCTCTGGAACACATATTCTCCTTCCTACCCTTTAAAGACTTTGCTCGAGTCAGTTGTATTTCGAAAAGTTACAGCAAACTTCATCCATCTTCTCTGACATTAAGTTTAGATGAATCCTTTGATGCAAGCATTTTCACATGTGACCAGCGGAAACAACTGTTGGGATCCTTGGAGAGGTTCTTGATTCGACAGGGTGTTATAAGTTGCAATGCTTTAGATTTTCTTGGTGCTATCATGATCACGATCAATTCAAACCAGAAAGCTGCTGTCCCGAGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

111

Amino Acids

12.41

Weight (kDa)

8.42

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	11 - 41	7e-09	F-box domain
F-box-like	PF12937	11 - 42	6.2e-08	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04250
rosa_laevigata	RLG00000014989 RLG00000014994
rosa_multiflora	Rmu_sc0000331.1_g000017 Rmu_sc0001351.1_g000005 Rmu_sc0001351.1_g000011 Rmu_sc0006378.1_g000001 Rmu_sc0006378.1_g000002
rosa_roxburghii	Rroxscaffold_7G00211680
rosa_rugosa	Rorug05G0545400 Rorug05G0545400 Rorug05G0546100
rosa_samantha	Rh6AG061600 Rh6AG061700 Rh6BG055200 Rh6CG054700 Rh6DG052200 Rh6DG052700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
AciI	CCGC	1 cut(s)	199
AclWI	GGATC	2 cut(s)	210, 223
AfiI	CCNNNNNNNGG	1 cut(s)	225
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	303
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	2 cut(s)	53, 314
AluI	AGCT	2 cut(s)	53, 314
AlwI	GGATC	2 cut(s)	210, 223
Ama87I	CYCGRG	2 cut(s)	96, 322
ApeKI	GCWGC	1 cut(s)	314
AsuII	TTCGAA	1 cut(s)	113
AvaI	CYCGRG	2 cut(s)	96, 322
BamHI	GGATCC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	288
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
BmeT110I	CYCGRG	2 cut(s)	96, 322
BmiI	GGNNCC	1 cut(s)	217
BmsI	GCATC	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	219, 323
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	265
Bse8I	GATNNNNATC	1 cut(s)	293
BseDI	CCNNGG	2 cut(s)	219, 323
BseGI	GGATG	1 cut(s)	133
BseJI	GATNNNNATC	1 cut(s)	293
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMI	GCAATG	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	301
BsiHKCI	CYCGRG	2 cut(s)	96, 322
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	305
BsoBI	CYCGRG	2 cut(s)	96, 322
Bsp119I	TTCGAA	1 cut(s)	113
Bsp143I	GATC	5 cut(s)	15, 37, 215, 288, 294
BspACI	CCGC	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	217
BspPI	GGATC	2 cut(s)	210, 223
BspT104I	TTCGAA	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	265
BssECI	CCNNGG	2 cut(s)	219, 323
BssMI	GATC	5 cut(s)	15, 37, 215, 288, 294
BssT1I	CCWWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	178
BstENI	CCTNNNNNAGG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	5 cut(s)	18, 40, 218, 291, 297
BstMBI	GATC	5 cut(s)	15, 37, 215, 288, 294
BstNSI	RCATGY	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	178
CciI	TCATGA	1 cut(s)	285
CviAII	CATG	2 cut(s)	189, 286
CviJI	RGCY	2 cut(s)	53, 314
CviKI_1	RGCY	2 cut(s)	53, 314
DpnI	GATC	5 cut(s)	17, 39, 217, 290, 296
DpnII	GATC	5 cut(s)	15, 37, 215, 288, 294
DraI	TTTAAA	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	219
Eco88I	CYCGRG	2 cut(s)	96, 322
EcoNI	CCTNNNNNAGG	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	2 cut(s)	192, 289
FaiI	YATR	4 cut(s)	65, 190, 251, 287
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	2 cut(s)	188, 285
FbaI	TGATCA	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	315
GluI	GCNGC	1 cut(s)	315
Hin1II	CATG	2 cut(s)	192, 289
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	3 cut(s)	99, 164, 235
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	6 cut(s)	44, 56, 232, 286, 292, 322
Hpy8I	GTNNAC	1 cut(s)	24
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	176, 258
Hsp92II	CATG	2 cut(s)	192, 289
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	5 cut(s)	15, 37, 215, 288, 294
LpnPI	CCDG	5 cut(s)	41, 57, 209, 227, 320
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	1 cut(s)	163
MaeIII	GTNAC	2 cut(s)	119, 191
MalI	GATC	5 cut(s)	17, 39, 217, 290, 296
MboI	GATC	5 cut(s)	15, 37, 215, 288, 294
MboII	GAAGA	2 cut(s)	32, 132
MflI	RGATCY	1 cut(s)	215
MluCI	AATT	1 cut(s)	298
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	2 cut(s)	219, 318
MseI	TTAA	2 cut(s)	84, 152
MspA1I	CMGCKG	1 cut(s)	199
NdeII	GATC	5 cut(s)	15, 37, 215, 288, 294
NlaIII	CATG	2 cut(s)	192, 289
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	191
NspI	RCATGY	1 cut(s)	192
NspV	TTCGAA	1 cut(s)	113
PaeR7I	CTCGAG	1 cut(s)	96
PagI	TCATGA	1 cut(s)	285
PciI	ACATGT	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	164, 235
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PscI	ACATGT	1 cut(s)	188
PsiI	TTATAA	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	217
PspXI	VCTCGAGB	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	84, 152
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	5 cut(s)	15, 37, 215, 288, 294
SchI	GAGTC	1 cut(s)	108
SetI	ASST	3 cut(s)	55, 230, 316
SfaNI	GCATC	1 cut(s)	163
Sfr274I	CTCGAG	1 cut(s)	96
SfuI	TTCGAA	1 cut(s)	113
SlaI	CTCGAG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	1 cut(s)	298
SsiI	CCGC	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	210
TaqI	TCGA	3 cut(s)	97, 113, 238
TasI	AATT	1 cut(s)	298
TfiI	GAWTC	2 cut(s)	164, 235
Tru1I	TTAA	2 cut(s)	84, 152
Tru9I	TTAA	2 cut(s)	84, 152
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	1 cut(s)	314
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	4 cut(s)	17, 63, 122, 177
XagI	CCTNNNNNAGG	1 cut(s)	223
XceI	RCATGY	1 cut(s)	192
XhoI	CTCGAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.