Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006378.1

Orthogroup ID

OG0013603

Physical Location & Seq

Genomic Coordinates Forward (+)

4769 .. 5440

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006378.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgttccaaaacttgagcgaagtcatgagtttagaaaaagctgagattgagctagatcccggggtgaagtttgacgatgtattcaatccgtttcatggtattcgaagtgttaaagttctggatttatccgaaaggaccatgaagtgtctgtgcgagggggatttaacggcagaacaactacaactacataatgtttgttgtttaagaattcgtggtttaagcttaatggatgacgatgtccacgctatggtctcccttttaaaaagaatgccaaacttggctactttgcgcatagaggctggccggactggaagcagatatagatcatcatcttatggcaatatgtcagtctgggagttgcaaaagcttgctttacataacctaaaggaggtgacaatacagctttccattggaaataatggaatcagctttacacaatatctcctccatcacggtctacaattgcagaaaatggtcatctattatttaccggagcaatcttatgaagtcagaaggcacaaatggccaaggactacgaatgctaaagttgtctttcacgtgcgagaagacaaatatgagagcatagataatgtgtttgatttgcttgatagggatgtttatccatcggaacaaatattgattcagagatatgatcccatcgctaaagtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

223

Amino Acids

25.87

Weight (kDa)

6.45

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04250
rosa_laevigata	RLG00000014989 RLG00000014994
rosa_multiflora	Rmu_sc0000331.1_g000017 Rmu_sc0001351.1_g000005 Rmu_sc0001351.1_g000011 Rmu_sc0006378.1_g000001 Rmu_sc0006378.1_g000002
rosa_roxburghii	Rroxscaffold_7G00211680
rosa_rugosa	Rorug05G0545400 Rorug05G0545400 Rorug05G0546100
rosa_samantha	Rh6AG061600 Rh6AG061700 Rh6BG055200 Rh6CG054700 Rh6DG052200 Rh6DG052700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	290
AccB7I	CCANNNNNTGG	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	457
AclWI	GGATC	2 cut(s)	50, 647
AcoI	YGGCCR	2 cut(s)	301, 524
AcsI	RAATTY	1 cut(s)	207
AcvI	CACGTG	1 cut(s)	559
AfiI	CCNNNNNNNGG	3 cut(s)	95, 247, 388
AgsI	TTSAA	1 cut(s)	85
AluBI	AGCT	6 cut(s)	41, 52, 222, 367, 403, 429
AluI	AGCT	6 cut(s)	41, 52, 222, 367, 403, 429
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	2 cut(s)	50, 647
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	2 cut(s)	301, 524
ApoI	RAATTY	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	135
AsuC2I	CCSGG	2 cut(s)	60, 61
AsuHPI	GGTGA	2 cut(s)	76, 403
AsuII	TTCGAA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	135
BalI	TGGCCA	1 cut(s)	526
BbrPI	CACGTG	1 cut(s)	559
BbsI	GAAGAC	1 cut(s)	573
BccI	CCATC	3 cut(s)	456, 631, 665
BceAI	ACGGC	1 cut(s)	183
BcnI	CCSGG	2 cut(s)	60, 61
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	53
Bme1390I	CCNGG	2 cut(s)	60, 61
Bme18I	GGWCC	1 cut(s)	135
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	135
BmrFI	CCNGG	2 cut(s)	60, 61
BpiI	GAAGAC	1 cut(s)	573
Bpu14I	TTCGAA	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	60, 61
BsaAI	YACGTR	1 cut(s)	559
BsaBI	GATNNNNATC	3 cut(s)	322, 328, 618
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	3 cut(s)	59, 60, 527
BsaWI	WCCGGW	1 cut(s)	490
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 247, 388
Bse1I	ACTGG	1 cut(s)	313
Bse8I	GATNNNNATC	3 cut(s)	322, 328, 618
BseDI	CCNNGG	3 cut(s)	59, 60, 527
BseGI	GGATG	2 cut(s)	235, 619
BseJI	GATNNNNATC	3 cut(s)	322, 328, 618
BseLI	CCNNNNNNNGG	3 cut(s)	95, 247, 388
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	434
BshFI	GGCC	2 cut(s)	303, 526
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	3 cut(s)	60, 304, 491
BslI	CCNNNNNNNGG	3 cut(s)	95, 247, 388
BsmAI	GTCTC	1 cut(s)	256
BsmI	GAATGC	2 cut(s)	273, 544
BsnI	GGCC	2 cut(s)	303, 526
Bso31I	GGTCTC	1 cut(s)	256
BsoBI	CYCGRG	1 cut(s)	59
Bsp119I	TTCGAA	1 cut(s)	103
Bsp143I	GATC	3 cut(s)	55, 323, 652
BspANI	GGCC	2 cut(s)	303, 526
BspCNI	CTCAG	1 cut(s)	34
BspHI	TCATGA	1 cut(s)	24
BspPI	GGATC	2 cut(s)	50, 647
BspT104I	TTCGAA	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	3 cut(s)	59, 60, 527
BssMI	GATC	3 cut(s)	55, 323, 652
BssT1I	CCWWGG	1 cut(s)	527
Bst4CI	ACNGT	1 cut(s)	455
BstBAI	YACGTR	1 cut(s)	559
BstBI	TTCGAA	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	301, 369
BstDEI	CTNAG	1 cut(s)	42
BstENI	CCTNNNNNAGG	1 cut(s)	386
BstF5I	GGATG	2 cut(s)	235, 619
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	3 cut(s)	58, 326, 655
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	3 cut(s)	55, 323, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	523
BstSCI	CCNGG	2 cut(s)	58, 59
BstV2I	GAAGAC	1 cut(s)	573
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	303, 526
BtgZI	GCGATG	1 cut(s)	643
BtsCI	GGATG	2 cut(s)	235, 619
Cac8I	GCNNGC	2 cut(s)	301, 369
CciI	TCATGA	1 cut(s)	24
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	135
Cfr9I	CCCGGG	1 cut(s)	59
CviAII	CATG	3 cut(s)	25, 95, 139
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	3 cut(s)	57, 325, 654
DpnII	GATC	3 cut(s)	55, 323, 652
DraI	TTTAAA	1 cut(s)	261
EaeI	YGGCCR	2 cut(s)	301, 524
Eco130I	CCWWGG	1 cut(s)	527
Eco31I	GGTCTC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	135
Eco72I	CACGTG	1 cut(s)	559
Eco88I	CYCGRG	1 cut(s)	59
EcoNI	CCTNNNNNAGG	1 cut(s)	386
EcoRI	GAATTC	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	527
ErhI	CCWWGG	1 cut(s)	527
FaeI	CATG	3 cut(s)	28, 98, 142
FatI	CATG	3 cut(s)	24, 94, 138
FblI	GTMKAC	1 cut(s)	457
FokI	GGATG	2 cut(s)	242, 626
FspBI	CTAG	1 cut(s)	53
FspI	TGCGCA	1 cut(s)	290
GlaI	GCGC	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	303, 526
HapII	CCGG	3 cut(s)	60, 304, 491
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	3 cut(s)	28, 98, 142
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HindIII	AAGCTT	2 cut(s)	220, 365
HinfI	GANTC	2 cut(s)	423, 640
HpaII	CCGG	3 cut(s)	60, 304, 491
HphI	GGTGA	2 cut(s)	76, 403
Hpy166II	GTNNAC	2 cut(s)	241, 458
Hpy188I	TCNGA	4 cut(s)	130, 512, 628, 645
Hpy188III	TCNNGA	2 cut(s)	25, 119
Hpy8I	GTNNAC	2 cut(s)	241, 458
HpyAV	CCTTC	1 cut(s)	507
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	2 cut(s)	361, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	523
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	558
Hsp92II	CATG	3 cut(s)	28, 98, 142
HspAI	GCGC	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	55, 323, 652
LmnI	GCTCC	1 cut(s)	493
LpnPI	CCDG	7 cut(s)	73, 104, 285, 294, 317, 337, 504
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	3 cut(s)	57, 325, 654
MboI	GATC	3 cut(s)	55, 323, 652
MboII	GAAGA	1 cut(s)	578
MfeI	CAATTG	1 cut(s)	461
MflI	RGATCY	1 cut(s)	55
MlsI	TGGCCA	1 cut(s)	526
MluCI	AATT	2 cut(s)	207, 461
MluNI	TGGCCA	1 cut(s)	526
MnlI	CCTC	4 cut(s)	148, 289, 382, 455
Mox20I	TGGCCA	1 cut(s)	526
MscI	TGGCCA	1 cut(s)	526
MseI	TTAA	6 cut(s)	111, 164, 203, 218, 224, 260
Msp20I	TGGCCA	1 cut(s)	526
MspI	CCGG	3 cut(s)	60, 304, 491
MspR9I	CCNGG	2 cut(s)	60, 61
MunI	CAATTG	1 cut(s)	461
Mva1269I	GAATGC	2 cut(s)	273, 544
MwoI	GCNNNNNNNGC	1 cut(s)	523
NciI	CCSGG	2 cut(s)	60, 61
NdeII	GATC	3 cut(s)	55, 323, 652
NlaIII	CATG	3 cut(s)	28, 98, 142
NmuCI	GTSAC	1 cut(s)	391
NsbI	TGCGCA	1 cut(s)	290
NspV	TTCGAA	1 cut(s)	103
PagI	TCATGA	1 cut(s)	24
PctI	GAATGC	2 cut(s)	273, 544
PfeI	GAWTC	2 cut(s)	423, 640
PflFI	GACNNNGTC	1 cut(s)	236
PflMI	CCANNNNNTGG	1 cut(s)	247
PmaCI	CACGTG	1 cut(s)	559
PmlI	CACGTG	1 cut(s)	559
Ppu21I	YACGTR	1 cut(s)	559
PspCI	CACGTG	1 cut(s)	559
PspPI	GGNCC	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	55
PsyI	GACNNNGTC	1 cut(s)	236
SaqAI	TTAA	6 cut(s)	111, 164, 203, 218, 224, 260
Sau3AI	GATC	3 cut(s)	55, 323, 652
Sau96I	GGNCC	1 cut(s)	135
ScrFI	CCNGG	2 cut(s)	60, 61
SetI	ASST	9 cut(s)	43, 54, 224, 369, 384, 393, 405, 431, 561
SfuI	TTCGAA	1 cut(s)	103
SinI	GGWCC	1 cut(s)	135
SmaI	CCCGGG	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	2 cut(s)	207, 461
SspI	AATATT	1 cut(s)	636
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	58, 59
StyI	CCWWGG	1 cut(s)	527
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	1 cut(s)	103
TasI	AATT	2 cut(s)	207, 461
TfiI	GAWTC	2 cut(s)	423, 640
Tru1I	TTAA	6 cut(s)	111, 164, 203, 218, 224, 260
Tru9I	TTAA	6 cut(s)	111, 164, 203, 218, 224, 260
TseFI	GTSAC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	3 cut(s)	83, 155, 519
TspGWI	ACGGA	1 cut(s)	78
TspMI	CCCGGG	1 cut(s)	59
Tth111I	GACNNNGTC	1 cut(s)	236
Van91I	CCANNNNNTGG	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	135
XagI	CCTNNNNNAGG	1 cut(s)	386
XapI	RAATTY	1 cut(s)	207
XmaI	CCCGGG	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	457
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.