Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0013603

Physical Location & Seq

Genomic Coordinates Reverse (-)

9155361 .. 9156042

Gene Structure 682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG061700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAACTGCAAGCGAATCGAATCAACCAGATTTTGTGATCTTCCAGATGAAGTTCTGGAACACATTCTTTCCTTCCTTACCATTGAAGACCTCGCTCGAGTGGGTTGTGTTTCGAAAAGATACAGCAAACTTCATCCATCAACTCAGTCATTAAGTTTAGATGAATCCACTGATGCAAGTATTTTCACATGTGACCAGCGGAAACGACTATTGGGTTCCTTGGAGAGGGTCTTGATTCGACGTGGATGTAATAAGCTACAATGCTTTCGGTTTTCTTGGTGCTATCATGATCACGATGAAGGCAAACCAGAAAGCTGCTGCCCCAAGGACCTGAATTCGTGGATGGTCAAGTTTATCGACAATGTGATGAGGGGATTTTCAAATGGATCTCACATTCTTGCAAATGCATCAAGGAATTACGGTTGGAAGACTTATATGGTTTTCAGAATAAGAGTGCTACCATTGAAAGCCCATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

159

Amino Acids

18.49

Weight (kDa)

8.9

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	11 - 43	1.8e-09	F-box-like
F-box	PF00646	11 - 41	5.4e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04250
rosa_laevigata	RLG00000014989 RLG00000014994
rosa_multiflora	Rmu_sc0000331.1_g000017 Rmu_sc0001351.1_g000005 Rmu_sc0001351.1_g000011 Rmu_sc0006378.1_g000001 Rmu_sc0006378.1_g000002
rosa_roxburghii	Rroxscaffold_7G00211680
rosa_rugosa	Rorug05G0545400 Rorug05G0545400 Rorug05G0546100
rosa_samantha	Rh6AG061600 Rh6AG061700 Rh6BG055200 Rh6CG054700 Rh6DG052200 Rh6DG052700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	199
AclWI	GGATC	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	225
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	3 cut(s)	86, 381, 466
AjiI	CACGTC	1 cut(s)	242
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	2 cut(s)	256, 315
AluI	AGCT	2 cut(s)	256, 315
AlwI	GGATC	1 cut(s)	394
Ama87I	CYCGRG	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	315, 318
ApoI	RAATTY	1 cut(s)	334
Asp700I	GAANNNNTTC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	328
AsuII	TTCGAA	1 cut(s)	113
AvaI	CYCGRG	1 cut(s)	96
AvaII	GGWCC	1 cut(s)	328
BbsI	GAAGAC	2 cut(s)	93, 434
BbvI	GCAGC	2 cut(s)	302, 305
BccI	CCATC	2 cut(s)	145, 337
BcgI	CGANNNNNNTGC	1 cut(s)	32
BclI	TGATCA	1 cut(s)	289
BisI	GCNGC	2 cut(s)	316, 319
BlsI	GCNGC	2 cut(s)	317, 320
Bme18I	GGWCC	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	96
BmgBI	CACGTC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	217
BmsI	GCATC	2 cut(s)	163, 416
BpiI	GAAGAC	2 cut(s)	93, 434
Bpu14I	TTCGAA	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	219, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	219, 324
BseGI	GGATG	3 cut(s)	133, 251, 348
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	158
BseXI	GCAGC	2 cut(s)	302, 305
BsiHKCI	CYCGRG	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	96
Bsp119I	TTCGAA	1 cut(s)	113
Bsp143I	GATC	3 cut(s)	37, 289, 386
BspACI	CCGC	1 cut(s)	199
BspCNI	CTCAG	1 cut(s)	157
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	217
BspPI	GGATC	1 cut(s)	394
BspT104I	TTCGAA	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	219, 324
BssMI	GATC	3 cut(s)	37, 289, 386
BssT1I	CCWWGG	2 cut(s)	219, 324
Bst4CI	ACNGT	1 cut(s)	422
BstBI	TTCGAA	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	144
BstENI	CCTNNNNNAGG	1 cut(s)	223
BstF5I	GGATG	3 cut(s)	133, 251, 348
BstKTI	GATC	3 cut(s)	40, 292, 389
BstMBI	GATC	3 cut(s)	37, 289, 386
BstNSI	RCATGY	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	302, 305
BstV2I	GAAGAC	2 cut(s)	93, 434
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BtrI	CACGTC	1 cut(s)	242
BtsCI	GGATG	3 cut(s)	133, 251, 348
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	11
CciI	TCATGA	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	328
CviAII	CATG	2 cut(s)	189, 287
CviJI	RGCY	3 cut(s)	256, 315, 470
CviKI_1	RGCY	3 cut(s)	256, 315, 470
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	3 cut(s)	39, 291, 388
DpnII	GATC	3 cut(s)	37, 289, 386
Eco130I	CCWWGG	2 cut(s)	219, 324
Eco47I	GGWCC	1 cut(s)	328
Eco88I	CYCGRG	1 cut(s)	96
EcoNI	CCTNNNNNAGG	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	328
EcoRI	GAATTC	1 cut(s)	334
EcoT14I	CCWWGG	2 cut(s)	219, 324
EcoT22I	ATGCAT	1 cut(s)	409
ErhI	CCWWGG	2 cut(s)	219, 324
FaeI	CATG	2 cut(s)	192, 290
FaiI	YATR	4 cut(s)	190, 288, 435, 437
FalI	AAGNNNNNCTT	1 cut(s)	459
FatI	CATG	2 cut(s)	188, 286
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	316, 319
FokI	GGATG	3 cut(s)	120, 258, 355
Fsp4HI	GCNGC	2 cut(s)	316, 319
GluI	GCNGC	2 cut(s)	316, 319
Hin1II	CATG	2 cut(s)	192, 290
HinfI	GANTC	4 cut(s)	15, 20, 164, 235
Hpy188I	TCNGA	1 cut(s)	446
Hpy188III	TCNNGA	5 cut(s)	44, 56, 232, 287, 293
Hpy99I	CGWCG	1 cut(s)	243
HpyAV	CCTTC	2 cut(s)	82, 293
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	4 cut(s)	9, 176, 401, 407
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	2 cut(s)	192, 290
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	37, 289, 386
LpnPI	CCDG	6 cut(s)	40, 41, 57, 209, 321, 344
Lsp1109I	GCAGC	2 cut(s)	302, 305
LweI	GCATC	2 cut(s)	163, 416
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	3 cut(s)	39, 291, 388
MboI	GATC	3 cut(s)	37, 289, 386
MboII	GAAGA	3 cut(s)	32, 98, 439
MflI	RGATCY	1 cut(s)	386
MluCI	AATT	2 cut(s)	334, 415
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	3 cut(s)	101, 219, 363
Mph1103I	ATGCAT	1 cut(s)	409
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	199
NdeII	GATC	3 cut(s)	37, 289, 386
NlaIII	CATG	2 cut(s)	192, 290
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	191
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	1 cut(s)	192
NspV	TTCGAA	1 cut(s)	113
PaeR7I	CTCGAG	1 cut(s)	96
PagI	TCATGA	1 cut(s)	286
PciI	ACATGT	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	4 cut(s)	15, 20, 164, 235
PkrI	GCNGC	2 cut(s)	317, 320
PpuMI	RGGWCCY	1 cut(s)	328
PscI	ACATGT	1 cut(s)	188
Psp5II	RGGWCCY	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	328
PspPPI	RGGWCCY	1 cut(s)	328
PspXI	VCTCGAGB	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	386
SaqAI	TTAA	1 cut(s)	152
SatI	GCNGC	2 cut(s)	316, 319
Sau3AI	GATC	3 cut(s)	37, 289, 386
Sau96I	GGNCC	1 cut(s)	328
SetI	ASST	5 cut(s)	93, 244, 258, 317, 333
SfaNI	GCATC	2 cut(s)	163, 416
Sfr274I	CTCGAG	1 cut(s)	96
SfuI	TTCGAA	1 cut(s)	113
SinI	GGWCC	1 cut(s)	328
SlaI	CTCGAG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	2 cut(s)	334, 415
SsiI	CCGC	1 cut(s)	199
StyI	CCWWGG	2 cut(s)	219, 324
TaaI	ACNGT	1 cut(s)	422
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	5 cut(s)	18, 97, 113, 238, 357
TasI	AATT	2 cut(s)	334, 415
TfiI	GAWTC	4 cut(s)	15, 20, 164, 235
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	2 cut(s)	315, 318
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	5 cut(s)	17, 63, 122, 177, 312
TspRI	CASTG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	328
XagI	CCTNNNNNAGG	1 cut(s)	223
XapI	RAATTY	1 cut(s)	334
XceI	RCATGY	1 cut(s)	192
XhoI	CTCGAG	1 cut(s)	96
XmnI	GAANNNNTTC	1 cut(s)	63
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.