Rh6BG055200

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013603
Physical Location & Seq
Reverse (-)
8927716 .. 8928861
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG055200.1

Sequence Viewer

Length: 969 bp
ATGAGGGGATTTTCAAATGGATCTCACATTCTTGCAAATGCATCAAGGAATTACGGTTGGAAGACATATGGTTTTCAGAATAAGAGTGCTACCATTGAAAGCCCATCTTTGAAATCGTTTACTTTTATTTTGAATAAGGATTATATTTTATCCAATTACAATCTCTATGTCACCTGTGAGAAACTTGAAGACGCATGCATCCTTTTGGGGAAGCCGTGCTGCACAGGTAAATACGGTGGAGCGCTATTATTTTCTGCACCAAGTCTTAAAAATTTGAAATGGACTGGACACGTGATGATGTTCCAAAACTTGAGCGAAGTCATGAGTTTAGAAAAAGCTGAGATTGAGCTAGATCCCGGGGTGAAGTTTGACGATGTATTCAATCTGTTTCATGGTATTCGAAGTGTTAAAGTTCTGGATTTATCCGAAAGGACCATGAAGTGTCTGTGCGAGGGAGATTTAACGGCAGAACAACTACAACTACATAATGTTTGTTGTTTAAGAATTCGTGGTTTAAGCTTAATGGATGACGATGTCCACGCTATGGTCTCCCTTTTAAAAAGAATGCCAAACTTGGCTACTTTGCGCATAGACGCTGGCCGGACTGGAAGCAGATATAGATCATCATCTTATGGCAATATGTCAATCTGGGAGTTGCAAAAGCTTGCTTTACATAACCTAAAGGAGGTGACAATACAGCTTTCCAGTGGAAATAATGGAATCAGCTTTACACAATATCTCCTCCATCACGGTCTACAATTGCAGAAAATGGTCATCTATTATTTACCGGAGCAATCTTATGAAGTCAGGAGGTACAAATGGCCAAGGACTTCGAATGGTAAAGTTGTCTTTCACGTGCGAGAAGATAAATATGAGAGCATAGATAATGTGTTTGATTTGCTTGATAGGGATGTTTATCCATCGGAACAAATATTGATTCAGAGATATGATCCCATCGCTAAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

322

Amino Acids

36.85

Weight (kDa)

8.5

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 587
AccB7I CCANNNNNTGG 1 cut(s) 544
AccI GTMKAC 1 cut(s) 754
AclWI GGATC 3 cut(s) 28, 347, 944
AcoI YGGCCR 2 cut(s) 598, 821
AcsI RAATTY 2 cut(s) 271, 504
AcvI CACGTG 2 cut(s) 292, 856
AfaI GTAC 1 cut(s) 815
AfeI AGCGCT 1 cut(s) 243
AfiI CCNNNNNNNGG 2 cut(s) 544, 685
AflIII ACRYGT 1 cut(s) 289
AgsI TTSAA 7 cut(s) 15, 98, 112, 133, 188, 277, 382
AluBI AGCT 6 cut(s) 338, 349, 519, 664, 700, 726
AluI AGCT 6 cut(s) 338, 349, 519, 664, 700, 726
Alw26I GTCTC 1 cut(s) 553
AlwI GGATC 3 cut(s) 28, 347, 944
Ama87I CYCGRG 1 cut(s) 356
Aor51HI AGCGCT 1 cut(s) 243
AoxI GGCC 2 cut(s) 598, 821
ApeKI GCWGC 1 cut(s) 219
ApoI RAATTY 2 cut(s) 271, 504
AspLEI GCGC 2 cut(s) 244, 588
AspS9I GGNCC 1 cut(s) 432
AsuC2I CCSGG 2 cut(s) 357, 358
AsuHPI GGTGA 3 cut(s) 163, 373, 700
AsuII TTCGAA 2 cut(s) 400, 833
AvaI CYCGRG 1 cut(s) 356
AvaII GGWCC 1 cut(s) 432
BalI TGGCCA 1 cut(s) 823
BbrPI CACGTG 2 cut(s) 292, 856
BbsI GAAGAC 2 cut(s) 68, 195
BbvI GCAGC 1 cut(s) 206
BccI CCATC 4 cut(s) 112, 753, 928, 962
BceAI ACGGC 2 cut(s) 199, 480
BcnI CCSGG 2 cut(s) 357, 358
BcoDI GTCTC 1 cut(s) 553
BfaI CTAG 1 cut(s) 350
BfoI RGCGCY 1 cut(s) 245
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
Bme1390I CCNGG 2 cut(s) 357, 358
Bme18I GGWCC 1 cut(s) 432
BmeT110I CYCGRG 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 432
BmrFI CCNGG 2 cut(s) 357, 358
BmsI GCATC 2 cut(s) 50, 207
BpiI GAAGAC 2 cut(s) 68, 195
Bpu14I TTCGAA 2 cut(s) 400, 833
BpuEI CTTGAG 1 cut(s) 331
BpuMI CCSGG 2 cut(s) 357, 358
BsaAI YACGTR 2 cut(s) 292, 856
BsaBI GATNNNNATC 3 cut(s) 619, 625, 915
BsaI GGTCTC 1 cut(s) 553
BsaJI CCNNGG 3 cut(s) 356, 357, 824
BsaWI WCCGGW 1 cut(s) 787
BsaXI ACNNNNNCTCC 2 cut(s) 723, 753
Bsc4I CCNNNNNNNGG 2 cut(s) 544, 685
Bse1I ACTGG 3 cut(s) 289, 610, 705
Bse8I GATNNNNATC 3 cut(s) 619, 625, 915
BseDI CCNNGG 3 cut(s) 356, 357, 824
BseGI GGATG 3 cut(s) 198, 532, 916
BseJI GATNNNNATC 3 cut(s) 619, 625, 915
BseLI CCNNNNNNNGG 2 cut(s) 544, 685
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 3 cut(s) 289, 610, 705
BseRI GAGGAG 1 cut(s) 731
BseXI GCAGC 1 cut(s) 206
BsgI GTGCAG 2 cut(s) 205, 240
BshFI GGCC 2 cut(s) 600, 823
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 3 cut(s) 357, 601, 788
BslI CCNNNNNNNGG 2 cut(s) 544, 685
BsmAI GTCTC 1 cut(s) 553
BsmI GAATGC 1 cut(s) 570
BsnI GGCC 2 cut(s) 600, 823
Bso31I GGTCTC 1 cut(s) 553
BsoBI CYCGRG 1 cut(s) 356
Bsp119I TTCGAA 2 cut(s) 400, 833
Bsp143I GATC 4 cut(s) 20, 352, 620, 949
BspANI GGCC 2 cut(s) 600, 823
BspCNI CTCAG 1 cut(s) 331
BspHI TCATGA 1 cut(s) 321
BspPI GGATC 3 cut(s) 28, 347, 944
BspT104I TTCGAA 2 cut(s) 400, 833
BspTNI GGTCTC 1 cut(s) 553
BsrI ACTGG 3 cut(s) 289, 610, 705
BssECI CCNNGG 3 cut(s) 356, 357, 824
BssMI GATC 4 cut(s) 20, 352, 620, 949
BssT1I CCWWGG 1 cut(s) 824
Bst4CI ACNGT 3 cut(s) 56, 236, 752
BstBAI YACGTR 2 cut(s) 292, 856
BstBI TTCGAA 2 cut(s) 400, 833
BstC8I GCNNGC 3 cut(s) 196, 598, 666
BstDEI CTNAG 1 cut(s) 339
BstENI CCTNNNNNAGG 1 cut(s) 683
BstF5I GGATG 3 cut(s) 198, 532, 916
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 2 cut(s) 244, 588
BstKTI GATC 4 cut(s) 23, 355, 623, 952
BstMAI GTCTC 1 cut(s) 553
BstMBI GATC 4 cut(s) 20, 352, 620, 949
BstNSI RCATGY 1 cut(s) 198
BstSCI CCNGG 2 cut(s) 355, 356
BstV1I GCAGC 1 cut(s) 206
BstV2I GAAGAC 2 cut(s) 68, 195
BstX2I RGATCY 2 cut(s) 20, 352
BstYI RGATCY 2 cut(s) 20, 352
BsuRI GGCC 2 cut(s) 600, 823
BtgZI GCGATG 1 cut(s) 940
BtsCI GGATG 3 cut(s) 198, 532, 916
BtsIMutI CAGTG 1 cut(s) 712
Cac8I GCNNGC 3 cut(s) 196, 598, 666
CciI TCATGA 1 cut(s) 321
CfoI GCGC 2 cut(s) 244, 588
Cfr13I GGNCC 1 cut(s) 432
Cfr9I CCCGGG 1 cut(s) 356
CseI GACGC 2 cut(s) 200, 602
Csp6I GTAC 1 cut(s) 814
CviAII CATG 4 cut(s) 195, 322, 392, 436
CviQI GTAC 1 cut(s) 814
DdeI CTNAG 1 cut(s) 339
DpnI GATC 4 cut(s) 22, 354, 622, 951
DpnII GATC 4 cut(s) 20, 352, 620, 949
DraI TTTAAA 1 cut(s) 558
EaeI YGGCCR 2 cut(s) 598, 821
Eco130I CCWWGG 1 cut(s) 824
Eco31I GGTCTC 1 cut(s) 553
Eco47I GGWCC 1 cut(s) 432
Eco47III AGCGCT 1 cut(s) 243
Eco72I CACGTG 2 cut(s) 292, 856
Eco88I CYCGRG 1 cut(s) 356
EcoNI CCTNNNNNAGG 1 cut(s) 683
EcoRI GAATTC 1 cut(s) 504
EcoT14I CCWWGG 1 cut(s) 824
EcoT22I ATGCAT 2 cut(s) 43, 200
ErhI CCWWGG 1 cut(s) 824
FaeI CATG 4 cut(s) 198, 325, 395, 439
FalI AAGNNNNNCTT 2 cut(s) 91, 123
FatI CATG 4 cut(s) 194, 321, 391, 435
FauNDI CATATG 1 cut(s) 67
FblI GTMKAC 1 cut(s) 754
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 3 cut(s) 185, 539, 923
Fsp4HI GCNGC 1 cut(s) 220
FspBI CTAG 1 cut(s) 350
FspI TGCGCA 1 cut(s) 587
GlaI GCGC 2 cut(s) 243, 587
GluI GCNGC 1 cut(s) 220
HaeII RGCGCY 1 cut(s) 245
HaeIII GGCC 2 cut(s) 600, 823
HapII CCGG 3 cut(s) 357, 601, 788
HgaI GACGC 2 cut(s) 200, 602
HhaI GCGC 2 cut(s) 244, 588
Hin1II CATG 4 cut(s) 198, 325, 395, 439
Hin6I GCGC 2 cut(s) 242, 586
HinP1I GCGC 2 cut(s) 242, 586
HindIII AAGCTT 2 cut(s) 517, 662
HinfI GANTC 2 cut(s) 720, 937
HpaII CCGG 3 cut(s) 357, 601, 788
HphI GGTGA 3 cut(s) 163, 373, 700
Hpy166II GTNNAC 3 cut(s) 120, 538, 755
Hpy188I TCNGA 4 cut(s) 78, 427, 925, 942
Hpy188III TCNNGA 3 cut(s) 322, 416, 808
Hpy8I GTNNAC 3 cut(s) 120, 538, 755
HpyCH4III ACNGT 3 cut(s) 56, 236, 752
HpyCH4IV ACGT 2 cut(s) 291, 855
HpyCH4V TGCA 7 cut(s) 35, 41, 198, 222, 257, 658, 763
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 2 cut(s) 291, 855
Hsp92II CATG 4 cut(s) 198, 325, 395, 439
HspAI GCGC 2 cut(s) 242, 586
Kzo9I GATC 4 cut(s) 20, 352, 620, 949
LmnI GCTCC 2 cut(s) 239, 790
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 2 cut(s) 50, 207
MaeI CTAG 1 cut(s) 350
MaeII ACGT 2 cut(s) 291, 855
MaeIII GTNAC 2 cut(s) 169, 688
MalI GATC 4 cut(s) 22, 354, 622, 951
MboI GATC 4 cut(s) 20, 352, 620, 949
MboII GAAGA 3 cut(s) 73, 200, 875
MfeI CAATTG 1 cut(s) 758
MflI RGATCY 2 cut(s) 20, 352
MlsI TGGCCA 1 cut(s) 823
MluCI AATT 5 cut(s) 49, 154, 271, 504, 758
MluNI TGGCCA 1 cut(s) 823
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 4 cut(s) 445, 679, 752, 804
Mox20I TGGCCA 1 cut(s) 823
Mph1103I ATGCAT 2 cut(s) 43, 200
MscI TGGCCA 1 cut(s) 823
MseI TTAA 7 cut(s) 267, 408, 461, 500, 515, 521, 557
Msp20I TGGCCA 1 cut(s) 823
MspI CCGG 3 cut(s) 357, 601, 788
MspR9I CCNGG 2 cut(s) 357, 358
MunI CAATTG 1 cut(s) 758
Mva1269I GAATGC 1 cut(s) 570
NciI CCSGG 2 cut(s) 357, 358
NdeI CATATG 1 cut(s) 67
NdeII GATC 4 cut(s) 20, 352, 620, 949
NlaIII CATG 4 cut(s) 198, 325, 395, 439
NmuCI GTSAC 2 cut(s) 169, 688
NsbI TGCGCA 1 cut(s) 587
NsiI ATGCAT 2 cut(s) 43, 200
NspI RCATGY 1 cut(s) 198
NspV TTCGAA 2 cut(s) 400, 833
PaeI GCATGC 1 cut(s) 198
PagI TCATGA 1 cut(s) 321
PctI GAATGC 1 cut(s) 570
PfeI GAWTC 2 cut(s) 720, 937
PflFI GACNNNGTC 1 cut(s) 533
PflMI CCANNNNNTGG 1 cut(s) 544
PkrI GCNGC 1 cut(s) 221
PmaCI CACGTG 2 cut(s) 292, 856
PmlI CACGTG 2 cut(s) 292, 856
Ppu21I YACGTR 2 cut(s) 292, 856
PspCI CACGTG 2 cut(s) 292, 856
PspPI GGNCC 1 cut(s) 432
PsuI RGATCY 2 cut(s) 20, 352
PsyI GACNNNGTC 1 cut(s) 533
RsaI GTAC 1 cut(s) 815
RsaNI GTAC 1 cut(s) 814
SaqAI TTAA 7 cut(s) 267, 408, 461, 500, 515, 521, 557
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 4 cut(s) 20, 352, 620, 949
Sau96I GGNCC 1 cut(s) 432
ScrFI CCNGG 2 cut(s) 357, 358
SfaNI GCATC 2 cut(s) 50, 207
SfuI TTCGAA 2 cut(s) 400, 833
SinI GGWCC 1 cut(s) 432
SmaI CCCGGG 1 cut(s) 358
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
SphI GCATGC 1 cut(s) 198
Sse9I AATT 5 cut(s) 49, 154, 271, 504, 758
SspI AATATT 1 cut(s) 933
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 2 cut(s) 355, 356
StyI CCWWGG 1 cut(s) 824
TaaI ACNGT 3 cut(s) 56, 236, 752
TaiI ACGT 2 cut(s) 294, 858
TaqI TCGA 2 cut(s) 400, 833
TasI AATT 5 cut(s) 49, 154, 271, 504, 758
TfiI GAWTC 2 cut(s) 720, 937
Tru1I TTAA 7 cut(s) 267, 408, 461, 500, 515, 521, 557
Tru9I TTAA 7 cut(s) 267, 408, 461, 500, 515, 521, 557
TscAI CASTG 1 cut(s) 712
TseFI GTSAC 2 cut(s) 169, 688
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 2 cut(s) 169, 688
TspDTI ATGAA 3 cut(s) 380, 452, 816
TspMI CCCGGG 1 cut(s) 356
TspRI CASTG 1 cut(s) 712
Tth111I GACNNNGTC 1 cut(s) 533
Van91I CCANNNNNTGG 1 cut(s) 544
VpaK11BI GGWCC 1 cut(s) 432
XagI CCTNNNNNAGG 1 cut(s) 683
XapI RAATTY 2 cut(s) 271, 504
XceI RCATGY 1 cut(s) 198
XmaI CCCGGG 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 754
XspI CTAG 1 cut(s) 350
Zsp2I ATGCAT 2 cut(s) 43, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.