RLG00000014989

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013603
Physical Location & Seq
Forward (+)
60367798 .. 60368445
648 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014989

Sequence Viewer

Length: 648 bp
ATGAGTTTAGAAAAAGCTGAGATTGAGCTAGATCCCGGGGTGAAGTTTGACGATGTATTCAATCTGTTTAATGGCATTCGAAGTGCTAAAGTTCTGGATTTACCCGAAAGGACCATGAAGTGTCTGTGCGGGGGAGATTTAACGCCAGAACGACTACAACTACATAATGTTTGTTGTTTAAAAATTCGTGGTTTAAGCTTAATGGATGACGATGTCCACGCTATGGTCTCCCTTTTAGAAAGAATGACAAACTTGGCTACTTTGCGCATAGATGCAGGCCGGACTGGAAGCAGATATGGATCATCATCGTATGGTAATATGTCAATCTGGGAGTTGCAAAAGCTTGCTTTACATAACCTAAAGGAGGTGACAATACAGCTTTCCAGTGGAAATAATGGAATCAGCTTTACACAATATCTCCTCCATCACGGTCTACAATTGCAGAAAATGGTCATCTATTATTTACCGGAGCAATCTTATGAAGTCAGGAGGTACAAATGGCCAAGGACTTCGTATGCTAAAGTTGTCTTTCACGTGCAAGAAGATAAATATGAGAGCATAGATAATTTGTTTGATTTGCTTGATAGGGATGTTGATCCATCGGAACAAATATTGATTCAGAGATATGATCCCATCGCTAAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

216

Amino Acids

24.73

Weight (kDa)

5.87

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 266
AccB7I CCANNNNNTGG 1 cut(s) 223
AccI GTMKAC 1 cut(s) 433
AciI CCGC 1 cut(s) 129
AclWI GGATC 4 cut(s) 26, 307, 590, 623
AcoI YGGCCR 1 cut(s) 500
AcsI RAATTY 1 cut(s) 183
AcvI CACGTG 1 cut(s) 535
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 2 cut(s) 223, 364
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 6 cut(s) 17, 28, 198, 343, 379, 405
AluI AGCT 6 cut(s) 17, 28, 198, 343, 379, 405
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 4 cut(s) 26, 307, 590, 623
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 2 cut(s) 277, 500
ApoI RAATTY 1 cut(s) 183
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 1 cut(s) 111
AsuC2I CCSGG 2 cut(s) 36, 37
AsuHPI GGTGA 2 cut(s) 52, 379
AsuII TTCGAA 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 1 cut(s) 111
BalI TGGCCA 1 cut(s) 502
BbrPI CACGTG 1 cut(s) 535
BccI CCATC 3 cut(s) 432, 607, 641
BcnI CCSGG 2 cut(s) 36, 37
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 1 cut(s) 29
Bme1390I CCNGG 2 cut(s) 36, 37
Bme18I GGWCC 1 cut(s) 111
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 111
BmrFI CCNGG 2 cut(s) 36, 37
BmsI GCATC 1 cut(s) 262
Bpu14I TTCGAA 1 cut(s) 79
BpuMI CCSGG 2 cut(s) 36, 37
BsaAI YACGTR 1 cut(s) 535
BsaBI GATNNNNATC 3 cut(s) 298, 304, 594
BsaI GGTCTC 1 cut(s) 232
BsaJI CCNNGG 3 cut(s) 35, 36, 503
BsaWI WCCGGW 1 cut(s) 466
BsaXI ACNNNNNCTCC 2 cut(s) 402, 432
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 364
Bse1I ACTGG 2 cut(s) 289, 384
Bse8I GATNNNNATC 3 cut(s) 298, 304, 594
BseDI CCNNGG 3 cut(s) 35, 36, 503
BseGI GGATG 2 cut(s) 211, 595
BseJI GATNNNNATC 3 cut(s) 298, 304, 594
BseLI CCNNNNNNNGG 2 cut(s) 223, 364
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 2 cut(s) 289, 384
BseRI GAGGAG 1 cut(s) 410
BshFI GGCC 2 cut(s) 279, 502
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 3 cut(s) 36, 280, 467
BslI CCNNNNNNNGG 2 cut(s) 223, 364
BsmAI GTCTC 1 cut(s) 232
BsmI GAATGC 1 cut(s) 75
BsnI GGCC 2 cut(s) 279, 502
Bso31I GGTCTC 1 cut(s) 232
BsoBI CYCGRG 1 cut(s) 35
Bsp119I TTCGAA 1 cut(s) 79
Bsp143I GATC 4 cut(s) 31, 299, 595, 628
BspACI CCGC 1 cut(s) 129
BspANI GGCC 2 cut(s) 279, 502
BspCNI CTCAG 1 cut(s) 10
BspPI GGATC 4 cut(s) 26, 307, 590, 623
BspT104I TTCGAA 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 232
BsrI ACTGG 2 cut(s) 289, 384
BssECI CCNNGG 3 cut(s) 35, 36, 503
BssMI GATC 4 cut(s) 31, 299, 595, 628
BssT1I CCWWGG 1 cut(s) 503
Bst4CI ACNGT 1 cut(s) 431
BstBAI YACGTR 1 cut(s) 535
BstBI TTCGAA 1 cut(s) 79
BstC8I GCNNGC 2 cut(s) 277, 345
BstDEI CTNAG 1 cut(s) 18
BstENI CCTNNNNNAGG 1 cut(s) 362
BstF5I GGATG 2 cut(s) 211, 595
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 4 cut(s) 34, 302, 598, 631
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 4 cut(s) 31, 299, 595, 628
BstSCI CCNGG 2 cut(s) 34, 35
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BsuRI GGCC 2 cut(s) 279, 502
BtgZI GCGATG 1 cut(s) 619
BtsCI GGATG 2 cut(s) 211, 595
BtsIMutI CAGTG 1 cut(s) 391
Cac8I GCNNGC 2 cut(s) 277, 345
CfoI GCGC 1 cut(s) 267
Cfr13I GGNCC 1 cut(s) 111
Cfr9I CCCGGG 1 cut(s) 35
Csp6I GTAC 1 cut(s) 493
CviAII CATG 1 cut(s) 115
CviJI RGCY 9 cut(s) 17, 28, 198, 257, 279, 343, 379, 405, 502
CviKI_1 RGCY 9 cut(s) 17, 28, 198, 257, 279, 343, 379, 405, 502
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 1 cut(s) 18
DpnI GATC 4 cut(s) 33, 301, 597, 630
DpnII GATC 4 cut(s) 31, 299, 595, 628
DraI TTTAAA 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 500
Eco130I CCWWGG 1 cut(s) 503
Eco31I GGTCTC 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 111
Eco72I CACGTG 1 cut(s) 535
Eco88I CYCGRG 1 cut(s) 35
EcoNI CCTNNNNNAGG 1 cut(s) 362
EcoT14I CCWWGG 1 cut(s) 503
ErhI CCWWGG 1 cut(s) 503
FaeI CATG 1 cut(s) 118
FatI CATG 1 cut(s) 114
FauI CCCGC 1 cut(s) 122
FblI GTMKAC 1 cut(s) 433
FokI GGATG 2 cut(s) 218, 602
FspBI CTAG 1 cut(s) 29
FspI TGCGCA 1 cut(s) 266
GlaI GCGC 1 cut(s) 266
HaeIII GGCC 2 cut(s) 279, 502
HapII CCGG 3 cut(s) 36, 280, 467
HhaI GCGC 1 cut(s) 267
Hin1II CATG 1 cut(s) 118
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HindIII AAGCTT 2 cut(s) 196, 341
HinfI GANTC 2 cut(s) 399, 616
HpaII CCGG 3 cut(s) 36, 280, 467
HphI GGTGA 2 cut(s) 52, 379
Hpy166II GTNNAC 2 cut(s) 217, 434
Hpy188I TCNGA 2 cut(s) 604, 621
Hpy188III TCNNGA 2 cut(s) 95, 487
Hpy8I GTNNAC 2 cut(s) 217, 434
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 4 cut(s) 275, 337, 442, 538
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 1 cut(s) 118
HspAI GCGC 1 cut(s) 265
Kzo9I GATC 4 cut(s) 31, 299, 595, 628
LmnI GCTCC 1 cut(s) 469
LweI GCATC 1 cut(s) 262
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 1 cut(s) 367
MalI GATC 4 cut(s) 33, 301, 597, 630
MboI GATC 4 cut(s) 31, 299, 595, 628
MboII GAAGA 1 cut(s) 554
MfeI CAATTG 1 cut(s) 437
MflI RGATCY 1 cut(s) 31
MlsI TGGCCA 1 cut(s) 502
MluCI AATT 3 cut(s) 183, 437, 565
MluNI TGGCCA 1 cut(s) 502
MnlI CCTC 3 cut(s) 358, 431, 483
Mox20I TGGCCA 1 cut(s) 502
MscI TGGCCA 1 cut(s) 502
MseI TTAA 5 cut(s) 69, 140, 179, 194, 200
Msp20I TGGCCA 1 cut(s) 502
MspI CCGG 3 cut(s) 36, 280, 467
MspR9I CCNGG 2 cut(s) 36, 37
MunI CAATTG 1 cut(s) 437
Mva1269I GAATGC 1 cut(s) 75
NciI CCSGG 2 cut(s) 36, 37
NdeII GATC 4 cut(s) 31, 299, 595, 628
NlaIII CATG 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 367
NsbI TGCGCA 1 cut(s) 266
NspV TTCGAA 1 cut(s) 79
PctI GAATGC 1 cut(s) 75
PfeI GAWTC 2 cut(s) 399, 616
PflFI GACNNNGTC 1 cut(s) 212
PflMI CCANNNNNTGG 1 cut(s) 223
PmaCI CACGTG 1 cut(s) 535
PmlI CACGTG 1 cut(s) 535
Ppu21I YACGTR 1 cut(s) 535
PspCI CACGTG 1 cut(s) 535
PspPI GGNCC 1 cut(s) 111
PsuI RGATCY 1 cut(s) 31
PsyI GACNNNGTC 1 cut(s) 212
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
SaqAI TTAA 5 cut(s) 69, 140, 179, 194, 200
Sau3AI GATC 4 cut(s) 31, 299, 595, 628
Sau96I GGNCC 1 cut(s) 111
ScrFI CCNGG 2 cut(s) 36, 37
SfaNI GCATC 1 cut(s) 262
SfuI TTCGAA 1 cut(s) 79
SinI GGWCC 1 cut(s) 111
SmaI CCCGGG 1 cut(s) 37
Sse9I AATT 3 cut(s) 183, 437, 565
SsiI CCGC 1 cut(s) 129
SspI AATATT 1 cut(s) 612
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 34, 35
StyI CCWWGG 1 cut(s) 503
TaaI ACNGT 1 cut(s) 431
TaiI ACGT 1 cut(s) 537
TaqI TCGA 1 cut(s) 79
TasI AATT 3 cut(s) 183, 437, 565
TfiI GAWTC 2 cut(s) 399, 616
Tru1I TTAA 5 cut(s) 69, 140, 179, 194, 200
Tru9I TTAA 5 cut(s) 69, 140, 179, 194, 200
TscAI CASTG 1 cut(s) 391
TseFI GTSAC 1 cut(s) 367
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 2 cut(s) 131, 495
TspMI CCCGGG 1 cut(s) 35
TspRI CASTG 1 cut(s) 391
Tth111I GACNNNGTC 1 cut(s) 212
Van91I CCANNNNNTGG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 111
XagI CCTNNNNNAGG 1 cut(s) 362
XapI RAATTY 1 cut(s) 183
XmaI CCCGGG 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 433
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.