Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013603

Physical Location & Seq

Genomic Coordinates Reverse (-)

60386292 .. 60387725

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014994

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAGTTCTGGAAGACATTCTTTCCTTCCTTACCATTAAAGACCTACCTCGAATCGGTTGTGTTTCCATCAACCCTGTCATTAAGTTCAGACGAATCCTCCGATGCTAGTATTTCCACATGTGACCAGCGGAAAGAACTGTTGGGTTCCTTGGAGAGAATTCGTGGTTTGAGCTTAATGGATGATGATGTCCCCGCTATGGTCTCCCTTTTGAAAGCAATGCCAAACTTGGCTACTTTGCACATAGAGGCTGGCCGGACTGGAAGTAGATATAGATCATTATACTTTAGTCGTATGTCGGACTGGGAGTACTGGCTGGATTTGCTTGCTTTTATACATAACCTAAAGGAGGTGAAAATAAAGCTTTCCAGTGGAGTCAGGAGGTACAAATGGCCAAGGACTTTGAATGCTAAAGTTGTCTTTCACGTGCGAGAAGATAAATATGAGAGCATAGATAATGTGTTTGATTTACTGGATTGGGGTGTTGATCGCGGAACAAATATTGATTCAGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD

Protein Analysis

173

Amino Acids

19.86

Weight (kDa)

6.31

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04250
rosa_laevigata	RLG00000014989 RLG00000014994
rosa_multiflora	Rmu_sc0000331.1_g000017 Rmu_sc0001351.1_g000005 Rmu_sc0001351.1_g000011 Rmu_sc0006378.1_g000001 Rmu_sc0006378.1_g000002
rosa_roxburghii	Rroxscaffold_7G00211680
rosa_rugosa	Rorug05G0545400 Rorug05G0545400 Rorug05G0546100
rosa_samantha	Rh6AG061600 Rh6AG061700 Rh6BG055200 Rh6CG054700 Rh6DG052200 Rh6DG052700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	492
AciI	CCGC	3 cut(s)	130, 195, 492
AcoI	YGGCCR	2 cut(s)	253, 392
AcsI	RAATTY	1 cut(s)	159
AcvI	CACGTG	1 cut(s)	427
AfaI	GTAC	2 cut(s)	311, 386
AfiI	CCNNNNNNNGG	3 cut(s)	55, 199, 349
AflIII	ACRYGT	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	214, 406
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	2 cut(s)	174, 364
AluI	AGCT	2 cut(s)	174, 364
Alw26I	GTCTC	1 cut(s)	208
AoxI	GGCC	2 cut(s)	253, 392
ApoI	RAATTY	1 cut(s)	159
Asp700I	GAANNNNTTC	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	364
BalI	TGGCCA	1 cut(s)	394
BbrPI	CACGTG	1 cut(s)	427
BbsI	GAAGAC	1 cut(s)	20
BccI	CCATC	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	108
BmcAI	AGTACT	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	148
BmrI	ACTGGG	1 cut(s)	313
BmsI	GCATC	1 cut(s)	94
BmuI	ACTGGG	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	20
BsaAI	YACGTR	1 cut(s)	427
BsaBI	GATNNNNATC	1 cut(s)	274
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	2 cut(s)	150, 395
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 199, 349
Bse1I	ACTGG	5 cut(s)	265, 308, 317, 369, 477
Bse3DI	GCAATG	1 cut(s)	225
Bse8I	GATNNNNATC	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	150, 395
BseGI	GGATG	1 cut(s)	187
BseJI	GATNNNNATC	1 cut(s)	274
BseLI	CCNNNNNNNGG	3 cut(s)	55, 199, 349
BseMI	GCAATG	1 cut(s)	225
BseNI	ACTGG	5 cut(s)	265, 308, 317, 369, 477
Bsh1236I	CGCG	1 cut(s)	492
BshFI	GGCC	2 cut(s)	255, 394
BsiSI	CCGG	1 cut(s)	256
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	3 cut(s)	55, 199, 349
BsmAI	GTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	2 cut(s)	255, 394
Bso31I	GGTCTC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	275, 487
BspACI	CCGC	3 cut(s)	130, 195, 492
BspANI	GGCC	2 cut(s)	255, 394
BspFNI	CGCG	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	5 cut(s)	265, 308, 317, 369, 477
BssECI	CCNNGG	2 cut(s)	150, 395
BssMI	GATC	2 cut(s)	275, 487
BssT1I	CCWWGG	2 cut(s)	150, 395
Bst4CI	ACNGT	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	427
BstC8I	GCNNGC	2 cut(s)	253, 327
BstENI	CCTNNNNNAGG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	492
BstKTI	GATC	2 cut(s)	278, 490
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	2 cut(s)	275, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstNSI	RCATGY	1 cut(s)	123
BstUI	CGCG	1 cut(s)	492
BstV2I	GAAGAC	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	255, 394
BtsCI	GGATG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	2 cut(s)	253, 327
Csp6I	GTAC	2 cut(s)	310, 385
CviAII	CATG	1 cut(s)	120
CviJI	RGCY	7 cut(s)	174, 233, 251, 255, 316, 364, 394
CviKI_1	RGCY	7 cut(s)	174, 233, 251, 255, 316, 364, 394
CviQI	GTAC	2 cut(s)	310, 385
DpnI	GATC	2 cut(s)	277, 489
DpnII	GATC	2 cut(s)	275, 487
EaeI	YGGCCR	2 cut(s)	253, 392
Eco130I	CCWWGG	2 cut(s)	150, 395
Eco31I	GGTCTC	1 cut(s)	208
Eco72I	CACGTG	1 cut(s)	427
EcoNI	CCTNNNNNAGG	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	150, 395
ErhI	CCWWGG	2 cut(s)	150, 395
FaeI	CATG	1 cut(s)	123
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	1 cut(s)	119
FauI	CCCGC	1 cut(s)	202
FokI	GGATG	1 cut(s)	194
FspBI	CTAG	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	255, 394
HapII	CCGG	1 cut(s)	256
Hin1II	CATG	1 cut(s)	123
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	4 cut(s)	53, 95, 375, 506
HpaII	CCGG	1 cut(s)	256
HphI	GGTGA	1 cut(s)	364
Hpy188I	TCNGA	4 cut(s)	91, 103, 301, 511
Hpy188III	TCNNGA	2 cut(s)	10, 379
HpyAV	CCTTC	1 cut(s)	36
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	275, 487
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	2 cut(s)	277, 489
MboI	GATC	2 cut(s)	275, 487
MboII	GAAGA	2 cut(s)	25, 446
MlsI	TGGCCA	1 cut(s)	394
MluCI	AATT	1 cut(s)	159
MluNI	TGGCCA	1 cut(s)	394
MlyI	GAGTC	1 cut(s)	384
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	6 cut(s)	59, 109, 241, 343, 375, 505
Mox20I	TGGCCA	1 cut(s)	394
MroXI	GAANNNNTTC	1 cut(s)	17
MscI	TGGCCA	1 cut(s)	394
MseI	TTAA	3 cut(s)	38, 83, 176
Msp20I	TGGCCA	1 cut(s)	394
MspA1I	CMGCKG	1 cut(s)	130
MspI	CCGG	1 cut(s)	256
Mva1269I	GAATGC	1 cut(s)	412
MvnI	CGCG	1 cut(s)	492
MwoI	GCNNNNNNNGC	1 cut(s)	322
NdeII	GATC	2 cut(s)	275, 487
NlaIII	CATG	1 cut(s)	123
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	122
NspI	RCATGY	1 cut(s)	123
PciI	ACATGT	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	53, 95, 506
PleI	GAGTC	1 cut(s)	383
PmaCI	CACGTG	1 cut(s)	427
PmlI	CACGTG	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	383
Ppu21I	YACGTR	1 cut(s)	427
PscI	ACATGT	1 cut(s)	119
PspCI	CACGTG	1 cut(s)	427
PspN4I	GGNNCC	1 cut(s)	148
RsaI	GTAC	2 cut(s)	311, 386
RsaNI	GTAC	2 cut(s)	310, 385
SaqAI	TTAA	3 cut(s)	38, 83, 176
Sau3AI	GATC	2 cut(s)	275, 487
ScaI	AGTACT	1 cut(s)	311
SchI	GAGTC	1 cut(s)	384
SetI	ASST	9 cut(s)	47, 51, 176, 345, 354, 366, 386, 429, 516
SfaNI	GCATC	1 cut(s)	94
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	3 cut(s)	130, 195, 492
SspI	AATATT	1 cut(s)	502
SspMI	CTAG	1 cut(s)	108
StyI	CCWWGG	2 cut(s)	150, 395
TaaI	ACNGT	1 cut(s)	141
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	1 cut(s)	51
TasI	AATT	1 cut(s)	159
TatI	WGTACW	1 cut(s)	309
TfiI	GAWTC	3 cut(s)	53, 95, 506
Tru1I	TTAA	3 cut(s)	38, 83, 176
Tru9I	TTAA	3 cut(s)	38, 83, 176
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	376
XagI	CCTNNNNNAGG	1 cut(s)	347
XapI	RAATTY	1 cut(s)	159
XceI	RCATGY	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	1 cut(s)	108
ZrmI	AGTACT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.