Rmu_sc0006378.1_g000001

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006378.1
OG0013603
Physical Location & Seq
Forward (+)
3902 .. 4588
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006378.1_g000001.1.cds

Sequence Viewer

Length: 687 bp
atgaactgcaaccgaatcgagtcaaccagattttgcgatcttccagatgaagttctggaacacattctttccttccttaccattgaagacctcgctcgagtgggttgtgtttcgaaaagatacagcaaacttcatccatcaactcagtcattaagtttagatgaatccactgatgcaagtattttcacatgtgaccagcggaaacgactattgggttccttggagagggtcttgattcgacgtggatgtaataagctacgatgctttcggttttcttggtgctatcatgatcacgatgaaggcaaaccagaaagctgctgccccaaggacctgaattcgtggatggtcaagtttatcgacaatgtggtaaggtgtaatgttgaagagcttcatcttaagataaaccaacgtattacacaggcagcatacgtggaatttcctgttggtcgttgcaaatcgttaaagcatctatctgtcaagggcatgaaaacaaatattaaaacaccccttggctccgcttcgttttctaatctcgaacgcttggagttgacactagtttgtataccagatgaggggattttcaaatggatctcacattcttgcaaatgcatcaaggaattacggttggaagacttatatggttttcagaataagagtgctaccattgaaagcccatctttgaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

228

Amino Acids

26.22

Weight (kDa)

8.5

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 562
AciI CCGC 2 cut(s) 199, 516
AclWI GGATC 1 cut(s) 596
AcsI RAATTY 2 cut(s) 334, 434
AfiI CCNNNNNNNGG 2 cut(s) 225, 572
AflII CTTAAG 1 cut(s) 395
AflIII ACRYGT 1 cut(s) 188
AgsI TTSAA 5 cut(s) 86, 383, 583, 668, 682
AhlI ACTAGT 1 cut(s) 553
AjiI CACGTC 1 cut(s) 242
AjuI GAANNNNNNNTTGG 4 cut(s) 194, 226, 426, 458
AluBI AGCT 3 cut(s) 256, 315, 388
AluI AGCT 3 cut(s) 256, 315, 388
AlwI GGATC 1 cut(s) 596
Ama87I CYCGRG 1 cut(s) 96
ApeKI GCWGC 3 cut(s) 315, 318, 422
ApoI RAATTY 2 cut(s) 334, 434
Asp700I GAANNNNTTC 2 cut(s) 63, 387
AspS9I GGNCC 1 cut(s) 328
AsuII TTCGAA 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 96
AvaII GGWCC 1 cut(s) 328
BbsI GAAGAC 2 cut(s) 93, 636
BbvI GCAGC 3 cut(s) 302, 305, 434
BccI CCATC 3 cut(s) 145, 337, 682
BcgI CGANNNNNNTGC 1 cut(s) 32
BclI TGATCA 1 cut(s) 289
BcuI ACTAGT 1 cut(s) 553
BfaI CTAG 1 cut(s) 554
BfrI CTTAAG 1 cut(s) 395
BisI GCNGC 3 cut(s) 316, 319, 423
BlsI GCNGC 3 cut(s) 317, 320, 424
Bme18I GGWCC 1 cut(s) 328
BmeT110I CYCGRG 1 cut(s) 96
BmgBI CACGTC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 2 cut(s) 217, 514
BmsI GCATC 4 cut(s) 163, 251, 475, 618
BpiI GAAGAC 2 cut(s) 93, 636
Bpu14I TTCGAA 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 430
BsaJI CCNNGG 3 cut(s) 219, 324, 508
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 572
BseDI CCNNGG 3 cut(s) 219, 324, 508
BseGI GGATG 3 cut(s) 133, 251, 348
BseLI CCNNNNNNNGG 2 cut(s) 225, 572
BseMII CTCAG 1 cut(s) 158
BseXI GCAGC 3 cut(s) 302, 305, 434
BsiHKCI CYCGRG 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 225, 572
BsoBI CYCGRG 1 cut(s) 96
Bsp119I TTCGAA 1 cut(s) 113
Bsp143I GATC 3 cut(s) 37, 289, 588
BspACI CCGC 2 cut(s) 199, 516
BspCNI CTCAG 1 cut(s) 157
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 217, 514
BspPI GGATC 1 cut(s) 596
BspQI GCTCTTC 1 cut(s) 378
BspT104I TTCGAA 1 cut(s) 113
BspTI CTTAAG 1 cut(s) 395
BssECI CCNNGG 3 cut(s) 219, 324, 508
BssMI GATC 3 cut(s) 37, 289, 588
BssNAI GTATAC 1 cut(s) 563
BssT1I CCWWGG 3 cut(s) 219, 324, 508
Bst1107I GTATAC 1 cut(s) 563
Bst4CI ACNGT 1 cut(s) 624
Bst6I CTCTTC 1 cut(s) 378
BstAFI CTTAAG 1 cut(s) 395
BstBAI YACGTR 1 cut(s) 430
BstBI TTCGAA 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 144
BstENI CCTNNNNNAGG 1 cut(s) 223
BstF5I GGATG 3 cut(s) 133, 251, 348
BstKTI GATC 3 cut(s) 40, 292, 591
BstMBI GATC 3 cut(s) 37, 289, 588
BstNSI RCATGY 1 cut(s) 192
BstV1I GCAGC 3 cut(s) 302, 305, 434
BstV2I GAAGAC 2 cut(s) 93, 636
BstX2I RGATCY 1 cut(s) 588
BstYI RGATCY 1 cut(s) 588
BstZ17I GTATAC 1 cut(s) 563
BtrI CACGTC 1 cut(s) 242
BtsCI GGATG 3 cut(s) 133, 251, 348
BtsIMutI CAGTG 1 cut(s) 168
CciI TCATGA 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 328
CviAII CATG 3 cut(s) 189, 287, 484
CviJI RGCY 5 cut(s) 256, 315, 388, 513, 672
CviKI_1 RGCY 5 cut(s) 256, 315, 388, 513, 672
DdeI CTNAG 1 cut(s) 144
DpnI GATC 3 cut(s) 39, 291, 590
DpnII GATC 3 cut(s) 37, 289, 588
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Eco130I CCWWGG 3 cut(s) 219, 324, 508
Eco47I GGWCC 1 cut(s) 328
Eco88I CYCGRG 1 cut(s) 96
EcoNI CCTNNNNNAGG 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 328
EcoRI GAATTC 1 cut(s) 334
EcoT14I CCWWGG 3 cut(s) 219, 324, 508
EcoT22I ATGCAT 1 cut(s) 611
ErhI CCWWGG 3 cut(s) 219, 324, 508
FaeI CATG 3 cut(s) 192, 290, 487
FaiI YATR 7 cut(s) 190, 288, 427, 485, 563, 637, 639
FalI AAGNNNNNCTT 1 cut(s) 661
FatI CATG 3 cut(s) 188, 286, 483
FbaI TGATCA 1 cut(s) 289
FblI GTMKAC 1 cut(s) 562
Fnu4HI GCNGC 3 cut(s) 316, 319, 423
FokI GGATG 3 cut(s) 120, 258, 355
Fsp4HI GCNGC 3 cut(s) 316, 319, 423
FspBI CTAG 1 cut(s) 554
GluI GCNGC 3 cut(s) 316, 319, 423
Hin1II CATG 3 cut(s) 192, 290, 487
HincII GTYRAC 2 cut(s) 24, 549
HindII GTYRAC 2 cut(s) 24, 549
HinfI GANTC 4 cut(s) 15, 20, 164, 235
Hpy166II GTNNAC 3 cut(s) 24, 549, 563
Hpy188I TCNGA 1 cut(s) 648
Hpy188III TCNNGA 6 cut(s) 44, 56, 232, 287, 293, 533
Hpy8I GTNNAC 3 cut(s) 24, 549, 563
Hpy99I CGWCG 1 cut(s) 243
HpyAV CCTTC 2 cut(s) 82, 293
HpyCH4III ACNGT 1 cut(s) 624
HpyCH4IV ACGT 3 cut(s) 241, 409, 429
HpyCH4V TGCA 5 cut(s) 9, 176, 453, 603, 609
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 3 cut(s) 241, 409, 429
Hsp92II CATG 3 cut(s) 192, 290, 487
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 3 cut(s) 37, 289, 588
LguI GCTCTTC 1 cut(s) 378
LmnI GCTCC 1 cut(s) 518
LpnPI CCDG 9 cut(s) 40, 41, 57, 209, 321, 344, 404, 453, 579
Lsp1109I GCAGC 3 cut(s) 302, 305, 434
LweI GCATC 4 cut(s) 163, 251, 475, 618
MaeI CTAG 1 cut(s) 554
MaeII ACGT 3 cut(s) 241, 409, 429
MaeIII GTNAC 1 cut(s) 191
MalI GATC 3 cut(s) 39, 291, 590
MboI GATC 3 cut(s) 37, 289, 588
MboII GAAGA 4 cut(s) 32, 98, 395, 641
MflI RGATCY 1 cut(s) 588
MluCI AATT 3 cut(s) 334, 434, 617
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 606
MnlI CCTC 3 cut(s) 101, 219, 565
Mph1103I ATGCAT 1 cut(s) 611
MroXI GAANNNNTTC 2 cut(s) 63, 387
MseI TTAA 4 cut(s) 152, 396, 461, 498
MspA1I CMGCKG 1 cut(s) 199
MspCI CTTAAG 1 cut(s) 395
NdeII GATC 3 cut(s) 37, 289, 588
NlaIII CATG 3 cut(s) 192, 290, 487
NlaIV GGNNCC 2 cut(s) 217, 514
NmuCI GTSAC 1 cut(s) 191
NsiI ATGCAT 1 cut(s) 611
NspI RCATGY 1 cut(s) 192
NspV TTCGAA 1 cut(s) 113
PaeR7I CTCGAG 1 cut(s) 96
PagI TCATGA 1 cut(s) 286
PciI ACATGT 1 cut(s) 188
PciSI GCTCTTC 1 cut(s) 378
PdmI GAANNNNTTC 2 cut(s) 63, 387
PfeI GAWTC 3 cut(s) 15, 164, 235
PkrI GCNGC 3 cut(s) 317, 320, 424
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
Ppu21I YACGTR 1 cut(s) 430
PpuMI RGGWCCY 1 cut(s) 328
PscI ACATGT 1 cut(s) 188
Psp5II RGGWCCY 1 cut(s) 328
PspN4I GGNNCC 2 cut(s) 217, 514
PspPI GGNCC 1 cut(s) 328
PspPPI RGGWCCY 1 cut(s) 328
PspXI VCTCGAGB 1 cut(s) 96
PsuI RGATCY 1 cut(s) 588
SapI GCTCTTC 1 cut(s) 378
SaqAI TTAA 4 cut(s) 152, 396, 461, 498
SatI GCNGC 3 cut(s) 316, 319, 423
Sau3AI GATC 3 cut(s) 37, 289, 588
Sau96I GGNCC 1 cut(s) 328
SchI GAGTC 1 cut(s) 29
SetI ASST 9 cut(s) 93, 244, 258, 317, 333, 374, 390, 412, 432
SfaNI GCATC 4 cut(s) 163, 251, 475, 618
Sfr274I CTCGAG 1 cut(s) 96
SfuI TTCGAA 1 cut(s) 113
SinI GGWCC 1 cut(s) 328
SlaI CTCGAG 1 cut(s) 96
SmlI CTYRAG 2 cut(s) 96, 395
SmoI CTYRAG 2 cut(s) 96, 395
SpeI ACTAGT 1 cut(s) 553
Sse9I AATT 3 cut(s) 334, 434, 617
SsiI CCGC 2 cut(s) 199, 516
SspI AATATT 1 cut(s) 496
SspMI CTAG 1 cut(s) 554
StyI CCWWGG 3 cut(s) 219, 324, 508
TaaI ACNGT 1 cut(s) 624
TaiI ACGT 3 cut(s) 244, 412, 432
TaqI TCGA 6 cut(s) 18, 97, 113, 238, 357, 534
TasI AATT 3 cut(s) 334, 434, 617
TfiI GAWTC 3 cut(s) 15, 164, 235
Tru1I TTAA 4 cut(s) 152, 396, 461, 498
Tru9I TTAA 4 cut(s) 152, 396, 461, 498
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 3 cut(s) 315, 318, 422
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 7 cut(s) 17, 63, 122, 177, 312, 380, 500
TspRI CASTG 1 cut(s) 175
Vha464I CTTAAG 1 cut(s) 395
VpaK11BI GGWCC 1 cut(s) 328
XagI CCTNNNNNAGG 1 cut(s) 223
XapI RAATTY 2 cut(s) 334, 434
XceI RCATGY 1 cut(s) 192
XhoI CTCGAG 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 562
XmnI GAANNNNTTC 2 cut(s) 63, 387
XspI CTAG 1 cut(s) 554
Zsp2I ATGCAT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.