Rmu_sc0001351.1_g000011

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001351.1
Physical Location & Seq
Reverse (-)
36821 .. 38362
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001351.1_g000011.1.cds

Sequence Viewer

Length: 1542 bp
atgaactgcaagcgaatcgagtcaaccagattttacgatcttccagatgaagttctggaacacattctttccttccttaccattgaagacctcgctcgagtcggttgtgtttcgaaaagatacagcaaacttcatccatcaactcagtcattaagtttagatgaatccactgatgcaagtattttcacatgtgaccagaggaaacgactattgggttccttggagagggtcttgattcgacgtggatgtaataagctacaatgctttcggttttcttggtgctatcatgatcacgatgaaggcaaaccagaaagctgctgctgccccaaggacctgaattcgtggatggtcaagtttatcgacaatgtggtaaggtgtaatgttgaagagcttcatcttaagataaaccaacgtattatacaggcagcatacgtggaatttcctgttggtcgttgcaaatctttaaagcatctatctgtcaagggcatgaaaacaaatattaaaacaccccttggctccgcttcgttttctaatctcgaacgcttggagttgacactagtttgtataccagatgaggggattttcaaatggatctcacattcttgcaaatgcatcaaggaattacggttggaagacttatatggttttcagaataagagtgctaccattgaaagcccatctttgaaatcgtttacttttattttgaatgaggattataatttatccaattacaatctctatgtcacctgtgagaaacttgaagacgcatgcatccttttggggaagccgtgctacacaggtaaatacggtggagcgctattattttctgcaccaaatcttaaaaatttgaaatggactggacacgtgatgatgttccaaaacttgagcgaagtcatgagtttagaaaaagctgagattgagctagatcccggggtgaagtttgacgatgtattcaatccgtttcatggtattcgaagtgttaaagttctggatttatccgaaaggaccatgaagtgtctgtgcgagggggatttaacggcagaacaactacaactacataatgtttgttgtttaagaattcgtggtttaagcttaatggatgacgatgtccacgctatggtctcccttttaaaaagaatgccaaacttggctactttgcgcatagaggctggccggactggaagcagatatagatcatcatcttatgggaatatgtcaatctgggagttgcaaaagcttgctttacataacctaaaggaggtgacaatacagctttccattggaaataatggaatcagctttacacaatatctcctccatcacggtctacaattgcagaaaatggtcatctattatttaccggagcaatcttatgaagtcagaaggcacaaatggccaaggactacgaatgctaaagttgtctttcacgtgcgagaagacaaatatgagagcatagataatgtgtttgatttgcttgatagggatgtttatccatcggaacaaatattgattcagagatatgatcccatcgctaaagtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

513

Amino Acids

59.13

Weight (kDa)

7.96

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 717
Acc16I TGCGCA 1 cut(s) 1160
AccB7I CCANNNNNTGG 1 cut(s) 1117
AccI GTMKAC 2 cut(s) 565, 1327
AciI CCGC 1 cut(s) 519
AclWI GGATC 3 cut(s) 599, 920, 1517
AcoI YGGCCR 2 cut(s) 1171, 1394
AcsI RAATTY 4 cut(s) 337, 437, 844, 1077
AcvI CACGTG 2 cut(s) 865, 1429
AfeI AGCGCT 1 cut(s) 816
AfiI CCNNNNNNNGG 5 cut(s) 225, 575, 965, 1117, 1258
AflII CTTAAG 1 cut(s) 398
AflIII ACRYGT 2 cut(s) 188, 862
AgsI TTSAA 9 cut(s) 86, 386, 586, 671, 685, 706, 761, 850, 955
AhlI ACTAGT 1 cut(s) 556
AjiI CACGTC 1 cut(s) 242
AjuI GAANNNNNNNTTGG 4 cut(s) 194, 226, 429, 461
AluBI AGCT 9 cut(s) 256, 315, 391, 911, 922, 1092, 1237, 1273, 1299
AluI AGCT 9 cut(s) 256, 315, 391, 911, 922, 1092, 1237, 1273, 1299
Alw26I GTCTC 1 cut(s) 1126
AlwI GGATC 3 cut(s) 599, 920, 1517
Ama87I CYCGRG 2 cut(s) 96, 929
Aor51HI AGCGCT 1 cut(s) 816
AoxI GGCC 2 cut(s) 1171, 1394
ApeKI GCWGC 4 cut(s) 315, 318, 321, 425
ApoI RAATTY 4 cut(s) 337, 437, 844, 1077
Asp700I GAANNNNTTC 2 cut(s) 63, 390
AspLEI GCGC 2 cut(s) 817, 1161
AspS9I GGNCC 2 cut(s) 331, 1005
AsuC2I CCSGG 2 cut(s) 930, 931
AsuHPI GGTGA 3 cut(s) 736, 946, 1273
AsuII TTCGAA 2 cut(s) 113, 973
AvaI CYCGRG 2 cut(s) 96, 929
AvaII GGWCC 2 cut(s) 331, 1005
BalI TGGCCA 1 cut(s) 1396
BarI GAAGNNNNNNTAC 2 cut(s) 776, 808
BbrPI CACGTG 2 cut(s) 865, 1429
BbsI GAAGAC 4 cut(s) 93, 639, 768, 1443
BbvI GCAGC 4 cut(s) 302, 305, 308, 437
BccI CCATC 6 cut(s) 145, 340, 685, 1326, 1501, 1535
BceAI ACGGC 2 cut(s) 772, 1053
BcgI CGANNNNNNTGC 1 cut(s) 32
BclI TGATCA 1 cut(s) 289
BcnI CCSGG 2 cut(s) 930, 931
BcoDI GTCTC 1 cut(s) 1126
BcuI ACTAGT 1 cut(s) 556
BfaI CTAG 2 cut(s) 557, 923
BfoI RGCGCY 1 cut(s) 818
BfrI CTTAAG 1 cut(s) 398
BisI GCNGC 4 cut(s) 316, 319, 322, 426
BlsI GCNGC 4 cut(s) 317, 320, 323, 427
Bme1390I CCNGG 2 cut(s) 930, 931
Bme18I GGWCC 2 cut(s) 331, 1005
BmeT110I CYCGRG 2 cut(s) 96, 929
BmgBI CACGTC 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 331, 1005
BmiI GGNNCC 2 cut(s) 217, 517
BmrFI CCNGG 2 cut(s) 930, 931
BmsI GCATC 4 cut(s) 163, 478, 621, 780
BpiI GAAGAC 4 cut(s) 93, 639, 768, 1443
Bpu14I TTCGAA 2 cut(s) 113, 973
BpuEI CTTGAG 1 cut(s) 904
BpuMI CCSGG 2 cut(s) 930, 931
BsaAI YACGTR 3 cut(s) 433, 865, 1429
BsaBI GATNNNNATC 3 cut(s) 1192, 1198, 1488
BsaI GGTCTC 1 cut(s) 1126
BsaJI CCNNGG 6 cut(s) 219, 327, 511, 929, 930, 1397
BsaWI WCCGGW 1 cut(s) 1360
BsaXI ACNNNNNCTCC 2 cut(s) 1296, 1326
Bsc4I CCNNNNNNNGG 5 cut(s) 225, 575, 965, 1117, 1258
Bse1I ACTGG 2 cut(s) 862, 1183
Bse8I GATNNNNATC 3 cut(s) 1192, 1198, 1488
BseDI CCNNGG 6 cut(s) 219, 327, 511, 929, 930, 1397
BseGI GGATG 6 cut(s) 133, 251, 351, 771, 1105, 1489
BseJI GATNNNNATC 3 cut(s) 1192, 1198, 1488
BseLI CCNNNNNNNGG 5 cut(s) 225, 575, 965, 1117, 1258
BseMII CTCAG 2 cut(s) 158, 903
BseNI ACTGG 2 cut(s) 862, 1183
BseRI GAGGAG 1 cut(s) 1304
BseXI GCAGC 4 cut(s) 302, 305, 308, 437
BsgI GTGCAG 1 cut(s) 813
BshFI GGCC 2 cut(s) 1173, 1396
BsiHKCI CYCGRG 2 cut(s) 96, 929
BsiSI CCGG 3 cut(s) 930, 1174, 1361
BslI CCNNNNNNNGG 5 cut(s) 225, 575, 965, 1117, 1258
BsmAI GTCTC 1 cut(s) 1126
BsmI GAATGC 2 cut(s) 1143, 1414
BsnI GGCC 2 cut(s) 1173, 1396
Bso31I GGTCTC 1 cut(s) 1126
BsoBI CYCGRG 2 cut(s) 96, 929
Bsp119I TTCGAA 2 cut(s) 113, 973
Bsp143I GATC 6 cut(s) 37, 289, 591, 925, 1193, 1522
BspACI CCGC 1 cut(s) 519
BspANI GGCC 2 cut(s) 1173, 1396
BspCNI CTCAG 2 cut(s) 157, 904
BspHI TCATGA 2 cut(s) 286, 894
BspLI GGNNCC 2 cut(s) 217, 517
BspPI GGATC 3 cut(s) 599, 920, 1517
BspQI GCTCTTC 1 cut(s) 381
BspT104I TTCGAA 2 cut(s) 113, 973
BspTI CTTAAG 1 cut(s) 398
BspTNI GGTCTC 1 cut(s) 1126
BsrI ACTGG 2 cut(s) 862, 1183
BssECI CCNNGG 6 cut(s) 219, 327, 511, 929, 930, 1397
BssMI GATC 6 cut(s) 37, 289, 591, 925, 1193, 1522
BssNAI GTATAC 1 cut(s) 566
BssT1I CCWWGG 4 cut(s) 219, 327, 511, 1397
Bst1107I GTATAC 1 cut(s) 566
Bst4CI ACNGT 3 cut(s) 627, 809, 1325
Bst6I CTCTTC 1 cut(s) 381
BstAFI CTTAAG 1 cut(s) 398
BstBAI YACGTR 3 cut(s) 433, 865, 1429
BstBI TTCGAA 2 cut(s) 113, 973
BstC8I GCNNGC 4 cut(s) 11, 769, 1171, 1239
BstDEI CTNAG 2 cut(s) 144, 912
BstENI CCTNNNNNAGG 2 cut(s) 223, 1256
BstF5I GGATG 6 cut(s) 133, 251, 351, 771, 1105, 1489
BstH2I RGCGCY 1 cut(s) 818
BstHHI GCGC 2 cut(s) 817, 1161
BstKTI GATC 6 cut(s) 40, 292, 594, 928, 1196, 1525
BstMAI GTCTC 1 cut(s) 1126
BstMBI GATC 6 cut(s) 37, 289, 591, 925, 1193, 1522
BstMWI GCNNNNNNNGC 2 cut(s) 321, 1393
BstNSI RCATGY 2 cut(s) 192, 771
BstSCI CCNGG 2 cut(s) 928, 929
BstV1I GCAGC 4 cut(s) 302, 305, 308, 437
BstV2I GAAGAC 4 cut(s) 93, 639, 768, 1443
BstX2I RGATCY 2 cut(s) 591, 925
BstYI RGATCY 2 cut(s) 591, 925
BstZ17I GTATAC 1 cut(s) 566
BsuRI GGCC 2 cut(s) 1173, 1396
BtgZI GCGATG 1 cut(s) 1513
BtrI CACGTC 1 cut(s) 242
BtsCI GGATG 6 cut(s) 133, 251, 351, 771, 1105, 1489
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 4 cut(s) 11, 769, 1171, 1239
CciI TCATGA 2 cut(s) 286, 894
CfoI GCGC 2 cut(s) 817, 1161
Cfr13I GGNCC 2 cut(s) 331, 1005
Cfr9I CCCGGG 1 cut(s) 929
CseI GACGC 1 cut(s) 773
CviAII CATG 7 cut(s) 189, 287, 487, 768, 895, 965, 1009
DdeI CTNAG 2 cut(s) 144, 912
DpnI GATC 6 cut(s) 39, 291, 593, 927, 1195, 1524
DpnII GATC 6 cut(s) 37, 289, 591, 925, 1193, 1522
DraI TTTAAA 2 cut(s) 465, 1131
EaeI YGGCCR 2 cut(s) 1171, 1394
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Eco130I CCWWGG 4 cut(s) 219, 327, 511, 1397
Eco31I GGTCTC 1 cut(s) 1126
Eco47I GGWCC 2 cut(s) 331, 1005
Eco47III AGCGCT 1 cut(s) 816
Eco72I CACGTG 2 cut(s) 865, 1429
Eco88I CYCGRG 2 cut(s) 96, 929
EcoNI CCTNNNNNAGG 2 cut(s) 223, 1256
EcoO109I RGGNCCY 1 cut(s) 331
EcoRI GAATTC 2 cut(s) 337, 1077
EcoT14I CCWWGG 4 cut(s) 219, 327, 511, 1397
EcoT22I ATGCAT 2 cut(s) 614, 773
ErhI CCWWGG 4 cut(s) 219, 327, 511, 1397
FaeI CATG 7 cut(s) 192, 290, 490, 771, 898, 968, 1012
FalI AAGNNNNNCTT 2 cut(s) 664, 696
FatI CATG 7 cut(s) 188, 286, 486, 767, 894, 964, 1008
FbaI TGATCA 1 cut(s) 289
FblI GTMKAC 2 cut(s) 565, 1327
Fnu4HI GCNGC 4 cut(s) 316, 319, 322, 426
FokI GGATG 6 cut(s) 120, 258, 358, 758, 1112, 1496
Fsp4HI GCNGC 4 cut(s) 316, 319, 322, 426
FspBI CTAG 2 cut(s) 557, 923
FspI TGCGCA 1 cut(s) 1160
GlaI GCGC 2 cut(s) 816, 1160
GluI GCNGC 4 cut(s) 316, 319, 322, 426
HaeII RGCGCY 1 cut(s) 818
HaeIII GGCC 2 cut(s) 1173, 1396
HapII CCGG 3 cut(s) 930, 1174, 1361
HgaI GACGC 1 cut(s) 773
HhaI GCGC 2 cut(s) 817, 1161
Hin1II CATG 7 cut(s) 192, 290, 490, 771, 898, 968, 1012
Hin6I GCGC 2 cut(s) 815, 1159
HinP1I GCGC 2 cut(s) 815, 1159
HincII GTYRAC 2 cut(s) 24, 552
HindII GTYRAC 2 cut(s) 24, 552
HindIII AAGCTT 2 cut(s) 1090, 1235
HinfI GANTC 7 cut(s) 15, 20, 99, 164, 235, 1293, 1510
HpaII CCGG 3 cut(s) 930, 1174, 1361
HphI GGTGA 3 cut(s) 736, 946, 1273
Hpy166II GTNNAC 6 cut(s) 24, 552, 566, 693, 1111, 1328
Hpy188I TCNGA 5 cut(s) 651, 1000, 1382, 1498, 1515
Hpy188III TCNNGA 8 cut(s) 44, 56, 232, 287, 293, 536, 895, 989
Hpy8I GTNNAC 6 cut(s) 24, 552, 566, 693, 1111, 1328
Hpy99I CGWCG 1 cut(s) 243
HpyAV CCTTC 3 cut(s) 82, 293, 1377
HpyCH4III ACNGT 3 cut(s) 627, 809, 1325
HpyCH4IV ACGT 5 cut(s) 241, 412, 432, 864, 1428
HpyCH4V TGCA 9 cut(s) 9, 176, 456, 606, 612, 771, 830, 1231, 1336
HpyF10VI GCNNNNNNNGC 2 cut(s) 321, 1393
HpyF3I CTNAG 2 cut(s) 144, 912
HpySE526I ACGT 5 cut(s) 241, 412, 432, 864, 1428
Hsp92II CATG 7 cut(s) 192, 290, 490, 771, 898, 968, 1012
HspAI GCGC 2 cut(s) 815, 1159
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 6 cut(s) 37, 289, 591, 925, 1193, 1522
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 3 cut(s) 521, 812, 1363
Lsp1109I GCAGC 4 cut(s) 302, 305, 308, 437
LweI GCATC 4 cut(s) 163, 478, 621, 780
MaeI CTAG 2 cut(s) 557, 923
MaeII ACGT 5 cut(s) 241, 412, 432, 864, 1428
MaeIII GTNAC 3 cut(s) 191, 742, 1261
MalI GATC 6 cut(s) 39, 291, 593, 927, 1195, 1524
MboI GATC 6 cut(s) 37, 289, 591, 925, 1193, 1522
MboII GAAGA 6 cut(s) 32, 98, 398, 644, 773, 1448
MfeI CAATTG 1 cut(s) 1331
MflI RGATCY 2 cut(s) 591, 925
MlsI TGGCCA 1 cut(s) 1396
MluCI AATT 8 cut(s) 337, 437, 620, 718, 727, 844, 1077, 1331
MluNI TGGCCA 1 cut(s) 1396
MlyI GAGTC 2 cut(s) 29, 108
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 9 cut(s) 101, 192, 219, 568, 703, 1018, 1159, 1252, 1325
Mox20I TGGCCA 1 cut(s) 1396
Mph1103I ATGCAT 2 cut(s) 614, 773
MroXI GAANNNNTTC 2 cut(s) 63, 390
MscI TGGCCA 1 cut(s) 1396
Msp20I TGGCCA 1 cut(s) 1396
MspCI CTTAAG 1 cut(s) 398
MspI CCGG 3 cut(s) 930, 1174, 1361
MspR9I CCNGG 2 cut(s) 930, 931
MunI CAATTG 1 cut(s) 1331
Mva1269I GAATGC 2 cut(s) 1143, 1414
MwoI GCNNNNNNNGC 2 cut(s) 321, 1393
NciI CCSGG 2 cut(s) 930, 931
NdeII GATC 6 cut(s) 37, 289, 591, 925, 1193, 1522
NlaIII CATG 7 cut(s) 192, 290, 490, 771, 898, 968, 1012
NlaIV GGNNCC 2 cut(s) 217, 517
NmuCI GTSAC 3 cut(s) 191, 742, 1261
NsbI TGCGCA 1 cut(s) 1160
NsiI ATGCAT 2 cut(s) 614, 773
NspI RCATGY 2 cut(s) 192, 771
NspV TTCGAA 2 cut(s) 113, 973
PaeI GCATGC 1 cut(s) 771
PaeR7I CTCGAG 1 cut(s) 96
PagI TCATGA 2 cut(s) 286, 894
PciI ACATGT 1 cut(s) 188
PciSI GCTCTTC 1 cut(s) 381
PctI GAATGC 2 cut(s) 1143, 1414
PdmI GAANNNNTTC 2 cut(s) 63, 390
PfeI GAWTC 5 cut(s) 15, 164, 235, 1293, 1510
PflFI GACNNNGTC 1 cut(s) 1106
PflMI CCANNNNNTGG 1 cut(s) 1117
PkrI GCNGC 4 cut(s) 317, 320, 323, 427
PleI GAGTC 2 cut(s) 28, 107
PmaCI CACGTG 2 cut(s) 865, 1429
PmlI CACGTG 2 cut(s) 865, 1429
PpsI GAGTC 2 cut(s) 28, 107
Ppu21I YACGTR 3 cut(s) 433, 865, 1429
PpuMI RGGWCCY 1 cut(s) 331
PscI ACATGT 1 cut(s) 188
PsiI TTATAA 1 cut(s) 717
Psp5II RGGWCCY 1 cut(s) 331
PspCI CACGTG 2 cut(s) 865, 1429
PspN4I GGNNCC 2 cut(s) 217, 517
PspPI GGNCC 2 cut(s) 331, 1005
PspPPI RGGWCCY 1 cut(s) 331
PspXI VCTCGAGB 1 cut(s) 96
PsuI RGATCY 2 cut(s) 591, 925
PsyI GACNNNGTC 1 cut(s) 1106
SapI GCTCTTC 1 cut(s) 381
SatI GCNGC 4 cut(s) 316, 319, 322, 426
Sau3AI GATC 6 cut(s) 37, 289, 591, 925, 1193, 1522
Sau96I GGNCC 2 cut(s) 331, 1005
SchI GAGTC 2 cut(s) 29, 108
ScrFI CCNGG 2 cut(s) 930, 931
SfaNI GCATC 4 cut(s) 163, 478, 621, 780
Sfr274I CTCGAG 1 cut(s) 96
SfuI TTCGAA 2 cut(s) 113, 973
SinI GGWCC 2 cut(s) 331, 1005
SlaI CTCGAG 1 cut(s) 96
SmaI CCCGGG 1 cut(s) 931
SmlI CTYRAG 3 cut(s) 96, 398, 883
SmoI CTYRAG 3 cut(s) 96, 398, 883
SpeI ACTAGT 1 cut(s) 556
SphI GCATGC 1 cut(s) 771
Sse9I AATT 8 cut(s) 337, 437, 620, 718, 727, 844, 1077, 1331
SsiI CCGC 1 cut(s) 519
SspI AATATT 2 cut(s) 499, 1506
SspMI CTAG 2 cut(s) 557, 923
StyD4I CCNGG 2 cut(s) 928, 929
StyI CCWWGG 4 cut(s) 219, 327, 511, 1397
TaaI ACNGT 3 cut(s) 627, 809, 1325
TaiI ACGT 5 cut(s) 244, 415, 435, 867, 1431
TaqI TCGA 7 cut(s) 18, 97, 113, 238, 360, 537, 973
TasI AATT 8 cut(s) 337, 437, 620, 718, 727, 844, 1077, 1331
TfiI GAWTC 5 cut(s) 15, 164, 235, 1293, 1510
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 3 cut(s) 191, 742, 1261
TseI GCWGC 4 cut(s) 315, 318, 321, 425
Tsp45I GTSAC 3 cut(s) 191, 742, 1261
TspGWI ACGGA 1 cut(s) 948
TspMI CCCGGG 1 cut(s) 929
TspRI CASTG 1 cut(s) 175
Tth111I GACNNNGTC 1 cut(s) 1106
Van91I CCANNNNNTGG 1 cut(s) 1117
Vha464I CTTAAG 1 cut(s) 398
VpaK11BI GGWCC 2 cut(s) 331, 1005
XagI CCTNNNNNAGG 2 cut(s) 223, 1256
XapI RAATTY 4 cut(s) 337, 437, 844, 1077
XceI RCATGY 2 cut(s) 192, 771
XhoI CTCGAG 1 cut(s) 96
XmaI CCCGGG 1 cut(s) 929
XmiI GTMKAC 2 cut(s) 565, 1327
XmnI GAANNNNTTC 2 cut(s) 63, 390
XspI CTAG 2 cut(s) 557, 923
Zsp2I ATGCAT 2 cut(s) 614, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.