Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007836

Physical Location & Seq

Genomic Coordinates Forward (+)

3350670 .. 3351568

Gene Structure 899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAGGGTTTGATTCCTTATCTTCTCCACGCCATCAAGAAGACAAGGCCTCAGCACAAGTATAGGACGTCATTTTCCGGGTCTGGCAACTCCAACCGGAGCTACCATCTCCTCACCAGTGGCAATGCCTCCTTAGAGGGGTCATCTCATCGCCGGGCGCGATCTGAGCTCCCAGCTCCGGCCGCTGCGGACTTGTTTGAGCAGCGATCGGAGCTTCATCAGTTTGCTTATTCAAGGAGCTACAAGGAAGAAGGTGGTGCTACTGCAGCTGCGGCTTCCTTACCCGGAGGATCAAAGAAGGGTTTCTATCCTTACCGAGCAGCTAATCGGAAATACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

114

Amino Acids

12.46

Weight (kDa)

9.93

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19615
fragaria_vesca	FvH4_2g04290 FvH4_2g04291
malus_domestica	MD10G1105100.v1.1
prunus_persica	Prupe.8G144000_v2.0.a1 Prupe.8G144100_v2.0.a1
pyrus_communis	pycom05g09840 pycom10g09050
rosa_chinensis	RchiOBHm_Chr6g0253681 RchiOBHm_Chr6g0253721 RchiOBHm_Chr6g0253731
rosa_laevigata	RLG00000014992
rosa_multiflora	Rmu_sc0001351.1_g000009
rosa_roxburghii	Rroxscaffold_7G00211700
rosa_rugosa	Rorug05G0545900
rosa_samantha	Rh6AG061300 Rh6AG061400 Rh6BG055000 Rh6CG054900 Rh6CG055000 Rh6DG052400 Rh6DG052500
rosa_wichuraiana	Rw6G005450 Rw6G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	71
AccII	CGCG	1 cut(s)	160
AciI	CCGC	3 cut(s)	183, 188, 272
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	180
AcyI	GRCGYC	1 cut(s)	68
AfiI	CCNNNNNNNGG	2 cut(s)	138, 178
AgsI	TTSAA	1 cut(s)	234
AluBI	AGCT	7 cut(s)	102, 169, 176, 214, 240, 269, 323
AluI	AGCT	7 cut(s)	102, 169, 176, 214, 240, 269, 323
Alw21I	GWGCWC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	298
AoxI	GGCC	2 cut(s)	47, 180
ApeKI	GCWGC	5 cut(s)	185, 202, 266, 269, 320
Asp700I	GAANNNNTTC	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	160
AsuC2I	CCSGG	3 cut(s)	79, 155, 285
AsuHPI	GGTGA	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	171
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	5 cut(s)	172, 214, 256, 278, 332
BccI	CCATC	2 cut(s)	41, 114
BcnI	CCSGG	3 cut(s)	79, 155, 285
BfmI	CTRYAG	1 cut(s)	264
BisI	GCNGC	7 cut(s)	183, 186, 203, 267, 270, 273, 321
BlsI	GCNGC	7 cut(s)	184, 187, 204, 268, 271, 274, 322
Bme1390I	CCNGG	3 cut(s)	79, 155, 285
BmrFI	CCNGG	3 cut(s)	79, 155, 285
BpiI	GAAGAC	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	51
BpuMI	CCSGG	3 cut(s)	79, 155, 285
BsaHI	GRCGYC	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 178
Bse1I	ACTGG	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	2 cut(s)	138, 178
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	2 cut(s)	65, 156
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	101
BseX3I	CGGCCG	1 cut(s)	180
BseXI	GCAGC	5 cut(s)	172, 214, 256, 278, 332
BseYI	CCCAGC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	160
Bsh1285I	CGRYCG	2 cut(s)	183, 209
BshFI	GGCC	2 cut(s)	49, 182
BsiEI	CGRYCG	2 cut(s)	183, 209
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	5 cut(s)	78, 97, 154, 179, 285
BslI	CCNNNNNNNGG	2 cut(s)	138, 178
BsnI	GGCC	2 cut(s)	49, 182
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	161, 206, 290
BspACI	CCGC	3 cut(s)	183, 188, 272
BspANI	GGCC	2 cut(s)	49, 182
BspCNI	CTCAG	2 cut(s)	64, 157
BspFNI	CGCG	1 cut(s)	160
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	117
BssMI	GATC	3 cut(s)	161, 206, 290
BssNI	GRCGYC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	68
BstDEI	CTNAG	3 cut(s)	51, 133, 165
BstFNI	CGCG	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	3 cut(s)	164, 209, 293
BstMBI	GATC	3 cut(s)	161, 206, 290
BstMCI	CGRYCG	2 cut(s)	183, 209
BstMWI	GCNNNNNNNGC	5 cut(s)	166, 182, 211, 266, 272
BstSCI	CCNGG	3 cut(s)	77, 153, 283
BstSFI	CTRYAG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	5 cut(s)	172, 214, 256, 278, 332
BstV2I	GAAGAC	1 cut(s)	47
BstZI	CGGCCG	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	49, 182
BtgZI	GCGATG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	124
CfoI	GCGC	1 cut(s)	160
DdeI	CTNAG	3 cut(s)	51, 133, 165
DpnI	GATC	3 cut(s)	163, 208, 292
DpnII	GATC	3 cut(s)	161, 206, 290
EaeI	YGGCCR	1 cut(s)	180
EagI	CGGCCG	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	169
EclXI	CGGCCG	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	171
Eco52I	CGGCCG	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	171
FaiI	YATR	1 cut(s)	63
Fnu4HI	GCNGC	7 cut(s)	183, 186, 203, 267, 270, 273, 321
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	7 cut(s)	183, 186, 203, 267, 270, 273, 321
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	7 cut(s)	183, 186, 203, 267, 270, 273, 321
GsaI	CCCAGC	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	49, 182
HapII	CCGG	5 cut(s)	78, 97, 154, 179, 285
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	68
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	5 cut(s)	78, 97, 154, 179, 285
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	3 cut(s)	166, 211, 330
Hpy188III	TCNNGA	1 cut(s)	37
HpyAV	CCTTC	2 cut(s)	245, 292
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	5 cut(s)	166, 182, 211, 266, 272
HpyF3I	CTNAG	3 cut(s)	51, 133, 165
HpySE526I	ACGT	1 cut(s)	68
Hsp92I	GRCGYC	1 cut(s)	68
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	3 cut(s)	161, 206, 290
LmnI	GCTCC	5 cut(s)	99, 174, 181, 211, 237
LpnPI	CCDG	8 cut(s)	69, 91, 110, 130, 167, 186, 192, 298
Lsp1109I	GCAGC	5 cut(s)	172, 214, 256, 278, 332
MaeII	ACGT	1 cut(s)	68
MalI	GATC	3 cut(s)	163, 208, 292
MboI	GATC	3 cut(s)	161, 206, 290
MboII	GAAGA	3 cut(s)	14, 52, 260
MhlI	GDGCHC	1 cut(s)	171
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	5 cut(s)	60, 122, 130, 139, 281
MroXI	GAANNNNTTC	1 cut(s)	302
MspA1I	CMGCKG	2 cut(s)	185, 269
MspI	CCGG	5 cut(s)	78, 97, 154, 179, 285
MspR9I	CCNGG	3 cut(s)	79, 155, 285
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	5 cut(s)	166, 182, 211, 266, 272
NciI	CCSGG	3 cut(s)	79, 155, 285
NdeII	GATC	3 cut(s)	161, 206, 290
PceI	AGGCCT	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	7 cut(s)	184, 187, 204, 268, 271, 274, 322
Ple19I	CGATCG	1 cut(s)	209
Psp124BI	GAGCTC	1 cut(s)	171
PspFI	CCCAGC	1 cut(s)	172
PstI	CTGCAG	1 cut(s)	268
PvuI	CGATCG	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	171
SatI	GCNGC	7 cut(s)	183, 186, 203, 267, 270, 273, 321
Sau3AI	GATC	3 cut(s)	161, 206, 290
ScrFI	CCNGG	3 cut(s)	79, 155, 285
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	9 cut(s)	71, 104, 171, 178, 216, 242, 256, 271, 325
SfcI	CTRYAG	1 cut(s)	264
SseBI	AGGCCT	1 cut(s)	49
SsiI	CCGC	3 cut(s)	183, 188, 272
SstI	GAGCTC	1 cut(s)	171
StuI	AGGCCT	1 cut(s)	49
StyD4I	CCNGG	3 cut(s)	77, 153, 283
TaiI	ACGT	1 cut(s)	71
TauI	GCSGC	2 cut(s)	185, 275
TfiI	GAWTC	1 cut(s)	13
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	5 cut(s)	185, 202, 266, 269, 320
TspDTI	ATGAA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	302
ZraI	GACGTC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.