Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007836

Physical Location & Seq

Genomic Coordinates Reverse (-)

62126264 .. 62130747

Gene Structure 4484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00211700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTCGAGGTCACTCTGCATGTGGAGCTTCCCGCCGGTGAACGAAGTAGAACCGGGAGAGAAAAAGGAAGATACAAGTCCTTTGATCAAATTAAAGCAAGGTATGGAAGGGTTGCTTCCCCTTCTATACCATGCCATCAAGAAGCGAAAATCAAAACACAAGCATAGATGCTTTTCGGAGAGCAATTTGAAAAGTAGCTACCGTCTCCTCGGTTGTGGCCATGACCTAATTACCTTGGAAGGCTTGTCTCATTGTCAAAAAGGATCCGAGTTCCAACCTCTGGTCACTGCTGAATTATTAGAGCAGCGATCCGCACTTGACTTTAATCATTCGTGTAGCTATGAGGAAGAAGATGGTGTTTCTGCGGGGGTTCCTTTTGTGCCAAGTTCCTCAAAAGATAGGTTTCTATCCATGCGAAACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

141

Amino Acids

15.91

Weight (kDa)

7.68

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19615
fragaria_vesca	FvH4_2g04290 FvH4_2g04291
malus_domestica	MD10G1105100.v1.1
prunus_persica	Prupe.8G144000_v2.0.a1 Prupe.8G144100_v2.0.a1
pyrus_communis	pycom05g09840 pycom10g09050
rosa_chinensis	RchiOBHm_Chr6g0253681 RchiOBHm_Chr6g0253721 RchiOBHm_Chr6g0253731
rosa_laevigata	RLG00000014992
rosa_multiflora	Rmu_sc0001351.1_g000009
rosa_roxburghii	Rroxscaffold_7G00211700
rosa_rugosa	Rorug05G0545900
rosa_samantha	Rh6AG061300 Rh6AG061400 Rh6BG055000 Rh6CG054900 Rh6CG055000 Rh6DG052400 Rh6DG052500
rosa_wichuraiana	Rw6G005450 Rw6G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	280
AciI	CCGC	3 cut(s)	32, 312, 365
AclWI	GGATC	3 cut(s)	258, 271, 303
AcoI	YGGCCR	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	190
AluBI	AGCT	3 cut(s)	27, 198, 339
AluI	AGCT	3 cut(s)	27, 198, 339
Alw26I	GTCTC	2 cut(s)	209, 252
AlwI	GGATC	3 cut(s)	258, 271, 303
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	219
BamHI	GGATCC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	2 cut(s)	143, 347
BclI	TGATCA	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	54
BcoDI	GTCTC	2 cut(s)	209, 252
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
Bme1390I	CCNGG	1 cut(s)	54
BmiI	GGNNCC	2 cut(s)	265, 372
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	208, 234
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse118I	RCCGGY	1 cut(s)	34
BseDI	CCNNGG	2 cut(s)	208, 234
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	316
BshFI	GGCC	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	35, 53
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	2 cut(s)	209, 252
BsmBI	CGTCTC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	219
Bsp143I	GATC	3 cut(s)	84, 263, 308
BspACI	CCGC	3 cut(s)	32, 312, 365
BspANI	GGCC	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	265, 372
BspPI	GGATC	3 cut(s)	258, 271, 303
BsrFI	RCCGGY	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	2 cut(s)	208, 234
BssMI	GATC	3 cut(s)	84, 263, 308
BssT1I	CCWWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	203
BstKTI	GATC	3 cut(s)	87, 266, 311
BstMAI	GTCTC	2 cut(s)	209, 252
BstMBI	GATC	3 cut(s)	84, 263, 308
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	316
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	219
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	285
Cfr10I	RCCGGY	1 cut(s)	34
CviAII	CATG	4 cut(s)	19, 131, 221, 412
CviJI	RGCY	5 cut(s)	27, 198, 219, 243, 339
CviKI_1	RGCY	5 cut(s)	27, 198, 219, 243, 339
DpnI	GATC	3 cut(s)	86, 265, 310
DpnII	GATC	3 cut(s)	84, 263, 308
EaeI	YGGCCR	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	4 cut(s)	22, 134, 224, 415
FaiI	YATR	9 cut(s)	20, 104, 127, 132, 165, 222, 342, 413, 424
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FatI	CATG	4 cut(s)	18, 130, 220, 411
FauI	CCCGC	2 cut(s)	39, 358
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	305
GluI	GCNGC	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	2 cut(s)	35, 53
Hin1II	CATG	4 cut(s)	22, 134, 224, 415
HpaII	CCGG	2 cut(s)	35, 53
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	2 cut(s)	178, 268
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	3 cut(s)	101, 131, 233
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
Hsp92II	CATG	4 cut(s)	22, 134, 224, 415
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	3 cut(s)	84, 263, 308
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	3 cut(s)	48, 66, 266
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	1 cut(s)	158
MaeIII	GTNAC	2 cut(s)	9, 283
MalI	GATC	3 cut(s)	86, 265, 310
MboI	GATC	3 cut(s)	84, 263, 308
MboII	GAAGA	3 cut(s)	80, 359, 362
MflI	RGATCY	1 cut(s)	263
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	4 cut(s)	89, 184, 228, 293
MluNI	TGGCCA	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	4 cut(s)	218, 288, 337, 400
Mox20I	TGGCCA	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	2 cut(s)	92, 324
Msp20I	TGGCCA	1 cut(s)	219
MspI	CCGG	2 cut(s)	35, 53
MspR9I	CCNGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	54
NdeII	GATC	3 cut(s)	84, 263, 308
NlaIII	CATG	4 cut(s)	22, 134, 224, 415
NlaIV	GGNNCC	2 cut(s)	265, 372
NmuCI	GTSAC	2 cut(s)	9, 283
NspI	RCATGY	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	265, 372
PsuI	RGATCY	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	92, 324
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	3 cut(s)	84, 263, 308
ScrFI	CCNGG	1 cut(s)	54
SfaNI	GCATC	1 cut(s)	158
SgrAI	CRCCGGYG	1 cut(s)	34
Sse9I	AATT	4 cut(s)	89, 184, 228, 293
SsiI	CCGC	3 cut(s)	32, 312, 365
StyD4I	CCNGG	1 cut(s)	52
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	203
TaqI	TCGA	1 cut(s)	5
TasI	AATT	4 cut(s)	89, 184, 228, 293
Tru1I	TTAA	2 cut(s)	92, 324
Tru9I	TTAA	2 cut(s)	92, 324
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	2 cut(s)	9, 283
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	2 cut(s)	9, 283
TspRI	CASTG	1 cut(s)	292
Van91I	CCANNNNNTGG	1 cut(s)	280
XceI	RCATGY	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.