Rw6G005460

hydrolase activity, hydrolyzing O-glycosyl compounds

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
8747679 .. 8747999
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G005460.1

Sequence Viewer

Length: 321 bp
ATGGAAGGGTTGCTTCCCCTTCTATACCATGCCATCAAGAAGCGAAGATCAAAACACAAGCACAGATGCTTTTCGGAGAGCAATTCAAAAAGTAGCTACCGTCTCCTCGGTTGTGGCCATGACCTAACCTTGGAAGGCTTGTCTCATTGTCAAAAAGGATCCGAGTTCCAACCTCTGGTCACTGCTGAATTATTAGAGCAGCGATCTGCACTTGACTTTAATCATTCGTGTAGCTACGAGGAAGAAGATGGTGTCTCTGCGGGGGTTCCTTTTGTGCCAAGTTCCTCAAAAGATAGGTTTCTGTCCATGCGAAACCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

11.96

Weight (kDa)

7.74

Isoelectric Point (pI)

58.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 175
AciI CCGC 1 cut(s) 260
AclWI GGATC 2 cut(s) 153, 166
AcoI YGGCCR 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 130, 175
AgsI TTSAA 1 cut(s) 87
AluBI AGCT 2 cut(s) 96, 234
AluI AGCT 2 cut(s) 96, 234
Alw26I GTCTC 3 cut(s) 107, 147, 259
AlwI GGATC 2 cut(s) 153, 166
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 199
BalI TGGCCA 1 cut(s) 117
BamHI GGATCC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 211
BccI CCATC 2 cut(s) 41, 242
BcoDI GTCTC 3 cut(s) 107, 147, 259
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
BmiI GGNNCC 2 cut(s) 160, 267
BmsI GCATC 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 106, 129
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 175
BseDI CCNNGG 2 cut(s) 106, 129
BseLI CCNNNNNNNGG 2 cut(s) 130, 175
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 192
BshFI GGCC 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 130, 175
BsmAI GTCTC 3 cut(s) 107, 147, 259
BsmBI CGTCTC 1 cut(s) 107
BsnI GGCC 1 cut(s) 117
Bsp143I GATC 3 cut(s) 47, 158, 203
BspACI CCGC 1 cut(s) 260
BspANI GGCC 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 160, 267
BspPI GGATC 2 cut(s) 153, 166
BssECI CCNNGG 2 cut(s) 106, 129
BssMI GATC 3 cut(s) 47, 158, 203
BssT1I CCWWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 101
BstKTI GATC 3 cut(s) 50, 161, 206
BstMAI GTCTC 3 cut(s) 107, 147, 259
BstMBI GATC 3 cut(s) 47, 158, 203
BstV1I GCAGC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BsuRI GGCC 1 cut(s) 117
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 180
CviAII CATG 3 cut(s) 29, 119, 307
CviJI RGCY 4 cut(s) 96, 117, 138, 234
CviKI_1 RGCY 4 cut(s) 96, 117, 138, 234
DpnI GATC 3 cut(s) 49, 160, 205
DpnII GATC 3 cut(s) 47, 158, 203
EaeI YGGCCR 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
Esp3I CGTCTC 1 cut(s) 107
FaeI CATG 3 cut(s) 32, 122, 310
FaiI YATR 5 cut(s) 25, 30, 120, 308, 319
FalI AAGNNNNNCTT 1 cut(s) 29
FatI CATG 3 cut(s) 28, 118, 306
FauI CCCGC 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 200
GluI GCNGC 1 cut(s) 200
HaeIII GGCC 1 cut(s) 117
Hin1II CATG 3 cut(s) 32, 122, 310
Hpy188I TCNGA 2 cut(s) 76, 163
Hpy188III TCNNGA 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 29, 128
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4V TGCA 1 cut(s) 209
Hsp92II CATG 3 cut(s) 32, 122, 310
Kzo9I GATC 3 cut(s) 47, 158, 203
LpnPI CCDG 1 cut(s) 161
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 1 cut(s) 56
MaeIII GTNAC 1 cut(s) 178
MalI GATC 3 cut(s) 49, 160, 205
MboI GATC 3 cut(s) 47, 158, 203
MboII GAAGA 3 cut(s) 57, 254, 257
MflI RGATCY 1 cut(s) 158
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 2 cut(s) 82, 188
MluNI TGGCCA 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 4 cut(s) 116, 183, 232, 295
Mox20I TGGCCA 1 cut(s) 117
MscI TGGCCA 1 cut(s) 117
MseI TTAA 1 cut(s) 219
Msp20I TGGCCA 1 cut(s) 117
NdeII GATC 3 cut(s) 47, 158, 203
NlaIII CATG 3 cut(s) 32, 122, 310
NlaIV GGNNCC 2 cut(s) 160, 267
NmuCI GTSAC 1 cut(s) 178
PflMI CCANNNNNTGG 1 cut(s) 175
PkrI GCNGC 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 160, 267
PsuI RGATCY 1 cut(s) 158
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 3 cut(s) 47, 158, 203
SetI ASST 7 cut(s) 98, 126, 131, 175, 236, 299, 318
SfaNI GCATC 1 cut(s) 56
Sse9I AATT 2 cut(s) 82, 188
SsiI CCGC 1 cut(s) 260
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 101
TasI AATT 2 cut(s) 82, 188
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 178
TspRI CASTG 1 cut(s) 187
Van91I CCANNNNNTGG 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.