Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007836

Physical Location & Seq

Genomic Coordinates Forward (+)

16073088 .. 16074063

Gene Structure 976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G144000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGAAGGCTTAATTCCATTTCTTTTTCATGCCCTGAAGAAGCAAAGGCCACAACACAGGTATAGGTCCTTTTCTCAGAGCAACTCCTCCAACCGCAGTTACCATCTCCTTATGAGTGGCCAGGATTCATTAGAGGGCTCCTCTCATCGCCGGACACGATCCGAATTTCAGCCTCCTGTTAGTACTGCTGCCTTCTTTGAGCAGCGGCCCGCGAATGAATTTGTTCATTCGCGGAGCCTCAAGGAAGAAGGTGGTGTTTCTGCTGCTCCTTCAGTGCTCATTGGATCATCAAAGATGGGTTCCTATCCTTACCAGATCTCTAATGTGGGTATGGCTAAAGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.83

Weight (kDa)

10.15

Isoelectric Point (pI)

75.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19615
fragaria_vesca	FvH4_2g04290 FvH4_2g04291
malus_domestica	MD10G1105100.v1.1
prunus_persica	Prupe.8G144000_v2.0.a1 Prupe.8G144100_v2.0.a1
pyrus_communis	pycom05g09840 pycom10g09050
rosa_chinensis	RchiOBHm_Chr6g0253681 RchiOBHm_Chr6g0253721 RchiOBHm_Chr6g0253731
rosa_laevigata	RLG00000014992
rosa_multiflora	Rmu_sc0001351.1_g000009
rosa_roxburghii	Rroxscaffold_7G00211700
rosa_rugosa	Rorug05G0545900
rosa_samantha	Rh6AG061300 Rh6AG061400 Rh6BG055000 Rh6CG054900 Rh6CG055000 Rh6DG052400 Rh6DG052500
rosa_wichuraiana	Rw6G005450 Rw6G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	212, 232
AciI	CCGC	4 cut(s)	94, 205, 210, 232
AclWI	GGATC	2 cut(s)	153, 292
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	2 cut(s)	164, 218
AcuI	CTGAAG	2 cut(s)	56, 255
AfaI	GTAC	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	120
Alw21I	GWGCWC	1 cut(s)	279
AlwI	GGATC	2 cut(s)	153, 292
AoxI	GGCC	3 cut(s)	47, 118, 206
ApeKI	GCWGC	3 cut(s)	188, 202, 263
ApoI	RAATTY	2 cut(s)	164, 218
Asp700I	GAANNNNTTC	1 cut(s)	222
AspS9I	GGNCC	2 cut(s)	66, 207
AvaII	GGWCC	1 cut(s)	66
BalI	TGGCCA	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	3 cut(s)	175, 214, 250
BccI	CCATC	2 cut(s)	111, 289
BciT130I	CCWGG	1 cut(s)	122
BglII	AGATCT	1 cut(s)	315
BisI	GCNGC	4 cut(s)	189, 203, 206, 264
BlsI	GCNGC	4 cut(s)	190, 204, 207, 265
BmcAI	AGTACT	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	2 cut(s)	66, 207
BmiI	GGNNCC	3 cut(s)	139, 236, 301
BmrFI	CCNGG	1 cut(s)	122
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpuEI	CTTGAG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	122
BseMII	CTCAG	1 cut(s)	89
BseRI	GAGGAG	2 cut(s)	76, 130
BseXI	GCAGC	3 cut(s)	175, 214, 250
Bsh1236I	CGCG	2 cut(s)	212, 232
BshFI	GGCC	3 cut(s)	49, 120, 208
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	151
BsnI	GGCC	3 cut(s)	49, 120, 208
Bsp1286I	GDGCHC	2 cut(s)	140, 279
Bsp143I	GATC	3 cut(s)	158, 284, 315
BspACI	CCGC	4 cut(s)	94, 205, 210, 232
BspANI	GGCC	3 cut(s)	49, 120, 208
BspCNI	CTCAG	1 cut(s)	88
BspFNI	CGCG	2 cut(s)	212, 232
BspLI	GGNNCC	3 cut(s)	139, 236, 301
BspPI	GGATC	2 cut(s)	153, 292
BssMI	GATC	3 cut(s)	158, 284, 315
Bst2UI	CCWGG	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	75
BstFNI	CGCG	2 cut(s)	212, 232
BstKTI	GATC	3 cut(s)	161, 287, 318
BstMBI	GATC	3 cut(s)	158, 284, 315
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstUI	CGCG	2 cut(s)	212, 232
BstV1I	GCAGC	3 cut(s)	175, 214, 250
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
BsuRI	GGCC	3 cut(s)	49, 120, 208
BtgZI	GCGATG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	210
Cfr13I	GGNCC	2 cut(s)	66, 207
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	8 cut(s)	9, 49, 120, 138, 172, 208, 237, 335
CviKI_1	RGCY	8 cut(s)	9, 49, 120, 138, 172, 208, 237, 335
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	3 cut(s)	160, 286, 317
DpnII	GATC	3 cut(s)	158, 284, 315
EaeI	YGGCCR	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	66
Eco57I	CTGAAG	2 cut(s)	56, 255
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	140
FaeI	CATG	1 cut(s)	32
FaiI	YATR	4 cut(s)	30, 63, 113, 332
FatI	CATG	1 cut(s)	28
FauI	CCCGC	1 cut(s)	217
Fnu4HI	GCNGC	4 cut(s)	189, 203, 206, 264
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	4 cut(s)	189, 203, 206, 264
GluI	GCNGC	4 cut(s)	189, 203, 206, 264
HaeIII	GGCC	3 cut(s)	49, 120, 208
HapII	CCGG	1 cut(s)	151
Hin1II	CATG	1 cut(s)	32
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	78, 163
HpyAV	CCTTC	3 cut(s)	202, 242, 279
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	32
Kzo9I	GATC	3 cut(s)	158, 284, 315
LmnI	GCTCC	3 cut(s)	143, 234, 271
LpnPI	CCDG	7 cut(s)	43, 47, 107, 134, 164, 189, 326
Lsp1109I	GCAGC	3 cut(s)	175, 214, 250
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	3 cut(s)	160, 286, 317
MboI	GATC	3 cut(s)	158, 284, 315
MboII	GAAGA	2 cut(s)	49, 257
MflI	RGATCY	1 cut(s)	315
MhlI	GDGCHC	2 cut(s)	140, 279
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	3 cut(s)	12, 164, 218
MluNI	TGGCCA	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	5 cut(s)	97, 127, 151, 183, 248
Mox20I	TGGCCA	1 cut(s)	120
MroXI	GAANNNNTTC	1 cut(s)	222
MscI	TGGCCA	1 cut(s)	120
MseI	TTAA	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	205
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	2 cut(s)	212, 232
NdeII	GATC	3 cut(s)	158, 284, 315
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	3 cut(s)	139, 236, 301
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	4 cut(s)	190, 204, 207, 265
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	3 cut(s)	139, 236, 301
PspPI	GGNCC	2 cut(s)	66, 207
PspPPI	RGGWCCY	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	315
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	4 cut(s)	189, 203, 206, 264
Sau3AI	GATC	3 cut(s)	158, 284, 315
Sau96I	GGNCC	2 cut(s)	66, 207
ScaI	AGTACT	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	2 cut(s)	140, 279
SetI	ASST	3 cut(s)	62, 68, 253
SinI	GGWCC	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	3 cut(s)	12, 164, 218
SsiI	CCGC	4 cut(s)	94, 205, 210, 232
StyD4I	CCNGG	1 cut(s)	120
TasI	AATT	3 cut(s)	12, 164, 218
TatI	WGTACW	1 cut(s)	182
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	279
TseI	GCWGC	3 cut(s)	188, 202, 263
TspDTI	ATGAA	4 cut(s)	17, 117, 215, 231
TspRI	CASTG	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	2 cut(s)	164, 218
XmnI	GAANNNNTTC	1 cut(s)	222
ZrmI	AGTACT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.