Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007836

Physical Location & Seq

Genomic Coordinates Forward (+)

5620281 .. 5621561

Gene Structure 1281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG054900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAGGGTTTGATTCCTTATCTTCTCCACGCCATCAAGAAGCAAAGGCCTCAGCACAAGTTTAGGTCATTTTCCGGGACCGCCGGGAGCAACTCCAACCGGAGCTACCATCTCCTCACCGGTGGCAATGACTCCTTAGAGGGGTCATCTCACCGCCGGACGCGATCTGAGTTCCCAGCTCCTGCCACTGCTGACTTGTTCGAGCAGCGATCGGAGCTTCAGTTTGCTTATTCCCGGAGCTACAAGGAAGAAAGTGGTGCTTCTGCAGCTGCGGCTTCCTTGCCCGGAGGATCAAAGAAGGGTTTCTATCCTTACCAAGCAGCTAGTAGGAAGTACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

113

Amino Acids

12.48

Weight (kDa)

9.93

Isoelectric Point (pI)

71.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19615
fragaria_vesca	FvH4_2g04290 FvH4_2g04291
malus_domestica	MD10G1105100.v1.1
prunus_persica	Prupe.8G144000_v2.0.a1 Prupe.8G144100_v2.0.a1
pyrus_communis	pycom05g09840 pycom10g09050
rosa_chinensis	RchiOBHm_Chr6g0253681 RchiOBHm_Chr6g0253721 RchiOBHm_Chr6g0253731
rosa_laevigata	RLG00000014992
rosa_multiflora	Rmu_sc0001351.1_g000009
rosa_roxburghii	Rroxscaffold_7G00211700
rosa_rugosa	Rorug05G0545900
rosa_samantha	Rh6AG061300 Rh6AG061400 Rh6BG055000 Rh6CG054900 Rh6CG055000 Rh6DG052400 Rh6DG052500
rosa_wichuraiana	Rw6G005450 Rw6G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	163
AciI	CCGC	3 cut(s)	81, 154, 272
AclWI	GGATC	1 cut(s)	298
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgeI	ACCGGT	1 cut(s)	119
AluBI	AGCT	6 cut(s)	105, 179, 217, 240, 269, 323
AluI	AGCT	6 cut(s)	105, 179, 217, 240, 269, 323
AlwI	GGATC	1 cut(s)	298
AlwNI	CAGNNNCTG	1 cut(s)	182
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	4 cut(s)	205, 266, 269, 320
AsiGI	ACCGGT	1 cut(s)	119
Asp700I	GAANNNNTTC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	78
AsuC2I	CCSGG	4 cut(s)	76, 85, 235, 285
AsuHPI	GGTGA	2 cut(s)	109, 143
AvaII	GGWCC	1 cut(s)	78
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	4 cut(s)	217, 256, 278, 332
BccI	CCATC	2 cut(s)	41, 117
BcnI	CCSGG	4 cut(s)	76, 85, 235, 285
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	264
BisI	GCNGC	5 cut(s)	206, 267, 270, 273, 321
BlsI	GCNGC	5 cut(s)	207, 268, 271, 274, 322
Bme1390I	CCNGG	4 cut(s)	76, 85, 235, 285
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	4 cut(s)	76, 85, 235, 285
Bpu10I	CCTNAGC	1 cut(s)	51
BpuMI	CCSGG	4 cut(s)	76, 85, 235, 285
BsaWI	WCCGGW	2 cut(s)	99, 119
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse118I	RCCGGY	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	65, 159
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	4 cut(s)	217, 256, 278, 332
BseYI	CCCAGC	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	163
Bsh1285I	CGRYCG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	49
BshTI	ACCGGT	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	212
BsiSI	CCGG	7 cut(s)	75, 84, 100, 120, 157, 235, 285
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	164, 209, 290
BspACI	CCGC	3 cut(s)	81, 154, 272
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	2 cut(s)	64, 160
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	79
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
BssMI	GATC	3 cut(s)	164, 209, 290
BstDEI	CTNAG	3 cut(s)	51, 136, 168
BstFNI	CGCG	1 cut(s)	163
BstKTI	GATC	3 cut(s)	167, 212, 293
BstMBI	GATC	3 cut(s)	164, 209, 290
BstMCI	CGRYCG	1 cut(s)	212
BstMWI	GCNNNNNNNGC	3 cut(s)	214, 266, 272
BstSCI	CCNGG	4 cut(s)	74, 83, 233, 283
BstSFI	CTRYAG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	4 cut(s)	217, 256, 278, 332
BsuRI	GGCC	1 cut(s)	49
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	78
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	334
CspAI	ACCGGT	1 cut(s)	119
CviJI	RGCY	8 cut(s)	49, 105, 179, 217, 240, 269, 275, 323
CviKI_1	RGCY	8 cut(s)	49, 105, 179, 217, 240, 269, 275, 323
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	3 cut(s)	51, 136, 168
DpnI	GATC	3 cut(s)	166, 211, 292
DpnII	GATC	3 cut(s)	164, 209, 290
Eco147I	AGGCCT	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	203
FalI	AAGNNNNNCTT	2 cut(s)	244, 276
FaqI	GGGAC	1 cut(s)	91
Fnu4HI	GCNGC	5 cut(s)	206, 267, 270, 273, 321
Fsp4HI	GCNGC	5 cut(s)	206, 267, 270, 273, 321
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	5 cut(s)	206, 267, 270, 273, 321
GsaI	CCCAGC	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	7 cut(s)	75, 84, 100, 120, 157, 235, 285
HgaI	GACGC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	13, 131
HpaII	CCGG	7 cut(s)	75, 84, 100, 120, 157, 235, 285
HphI	GGTGA	2 cut(s)	109, 143
Hpy188I	TCNGA	2 cut(s)	169, 214
Hpy188III	TCNNGA	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	292
HpyCH4V	TGCA	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	214, 266, 272
HpyF3I	CTNAG	3 cut(s)	51, 136, 168
Kzo9I	GATC	3 cut(s)	164, 209, 290
LmnI	GCTCC	5 cut(s)	87, 102, 184, 214, 237
LpnPI	CCDG	9 cut(s)	88, 97, 113, 133, 170, 189, 195, 248, 298
Lsp1109I	GCAGC	4 cut(s)	217, 256, 278, 332
MaeI	CTAG	1 cut(s)	324
MalI	GATC	3 cut(s)	166, 211, 292
MboI	GATC	3 cut(s)	164, 209, 290
MboII	GAAGA	2 cut(s)	14, 260
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	4 cut(s)	60, 125, 133, 281
MroXI	GAANNNNTTC	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	7 cut(s)	75, 84, 100, 120, 157, 235, 285
MspR9I	CCNGG	4 cut(s)	76, 85, 235, 285
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	3 cut(s)	214, 266, 272
NciI	CCSGG	4 cut(s)	76, 85, 235, 285
NdeII	GATC	3 cut(s)	164, 209, 290
NlaIV	GGNNCC	1 cut(s)	79
PceI	AGGCCT	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	13
PfoI	TCCNGGA	2 cut(s)	74, 233
PinAI	ACCGGT	1 cut(s)	119
PkrI	GCNGC	5 cut(s)	207, 268, 271, 274, 322
Ple19I	CGATCG	1 cut(s)	212
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	78
PstI	CTGCAG	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	182
PvuI	CGATCG	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SatI	GCNGC	5 cut(s)	206, 267, 270, 273, 321
Sau3AI	GATC	3 cut(s)	164, 209, 290
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	4 cut(s)	76, 85, 235, 285
SetI	ASST	7 cut(s)	68, 107, 181, 219, 242, 271, 325
SfcI	CTRYAG	1 cut(s)	264
SgrAI	CRCCGGYG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	78
SseBI	AGGCCT	1 cut(s)	49
SsiI	CCGC	3 cut(s)	81, 154, 272
SspMI	CTAG	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	49
StyD4I	CCNGG	4 cut(s)	74, 83, 233, 283
TaqI	TCGA	1 cut(s)	201
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	13
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	4 cut(s)	205, 266, 269, 320
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	302
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.