Rh6DG052500

hydrolase activity, hydrolyzing O-glycosyl compounds

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
5541836 .. 5542168
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG052500.1

Sequence Viewer

Length: 333 bp
ATGGAAGGGTTGCTTCCCCTTCTATACCATGCCATCAAGAAGCGAAGATCAAAACACAAGCACAGATGCTTTTCAGAGAGCAATTCGAAAAGTAGCTACCGTCTTCTCGGTTGTGGCCATGACCTAACCTTGGAAGGCTTTTCTCATTGTCAAAAAGGATCCGAGTTCCAACCTCTGGTCACTGCTGAATTATTAGAGCAGCGATCCGCACTTGACTTTAATCATTCGTGTAGCTACGAGGAAGAAGATGGTGTTTATGCGGGGGTTCCTTTTGTGCCAAGTTCCTCAAAAGATAGGTTTCTATCCATGCGAACGAAACCTATGACGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

12.58

Weight (kDa)

8.38

Isoelectric Point (pI)

53.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 175
AciI CCGC 2 cut(s) 207, 260
AclWI GGATC 3 cut(s) 153, 166, 198
AcoI YGGCCR 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 130, 175
AjiI CACGTC 1 cut(s) 327
AluBI AGCT 2 cut(s) 96, 234
AluI AGCT 2 cut(s) 96, 234
AlwI GGATC 3 cut(s) 153, 166, 198
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 199
AsuII TTCGAA 1 cut(s) 86
BalI TGGCCA 1 cut(s) 117
BamHI GGATCC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 211
BccI CCATC 2 cut(s) 41, 242
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
BmgBI CACGTC 1 cut(s) 327
BmiI GGNNCC 2 cut(s) 160, 267
BmsI GCATC 1 cut(s) 56
BpiI GAAGAC 1 cut(s) 95
Bpu14I TTCGAA 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 175
BseDI CCNNGG 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 130, 175
BseXI GCAGC 1 cut(s) 211
BshFI GGCC 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 130, 175
BsnI GGCC 1 cut(s) 117
Bsp119I TTCGAA 1 cut(s) 86
Bsp143I GATC 3 cut(s) 47, 158, 203
BspACI CCGC 2 cut(s) 207, 260
BspANI GGCC 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 160, 267
BspPI GGATC 3 cut(s) 153, 166, 198
BspT104I TTCGAA 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 3 cut(s) 47, 158, 203
BssT1I CCWWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 101
BstBI TTCGAA 1 cut(s) 86
BstKTI GATC 3 cut(s) 50, 161, 206
BstMBI GATC 3 cut(s) 47, 158, 203
BstV1I GCAGC 1 cut(s) 211
BstV2I GAAGAC 1 cut(s) 95
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BsuRI GGCC 1 cut(s) 117
BtrI CACGTC 1 cut(s) 327
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 180
CviAII CATG 3 cut(s) 29, 119, 307
CviJI RGCY 4 cut(s) 96, 117, 138, 234
CviKI_1 RGCY 4 cut(s) 96, 117, 138, 234
DpnI GATC 3 cut(s) 49, 160, 205
DpnII GATC 3 cut(s) 47, 158, 203
EaeI YGGCCR 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 3 cut(s) 32, 122, 310
FaiI YATR 6 cut(s) 25, 30, 120, 258, 308, 323
FalI AAGNNNNNCTT 1 cut(s) 29
FatI CATG 3 cut(s) 28, 118, 306
FauI CCCGC 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 200
GluI GCNGC 1 cut(s) 200
HaeIII GGCC 1 cut(s) 117
Hin1II CATG 3 cut(s) 32, 122, 310
Hpy188I TCNGA 2 cut(s) 76, 163
Hpy188III TCNNGA 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 29, 128
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 3 cut(s) 32, 122, 310
Kzo9I GATC 3 cut(s) 47, 158, 203
LpnPI CCDG 1 cut(s) 161
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 1 cut(s) 56
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 1 cut(s) 178
MalI GATC 3 cut(s) 49, 160, 205
MboI GATC 3 cut(s) 47, 158, 203
MboII GAAGA 4 cut(s) 57, 95, 254, 257
MflI RGATCY 1 cut(s) 158
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 2 cut(s) 82, 188
MluNI TGGCCA 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 3 cut(s) 183, 232, 295
Mox20I TGGCCA 1 cut(s) 117
MscI TGGCCA 1 cut(s) 117
MseI TTAA 1 cut(s) 219
Msp20I TGGCCA 1 cut(s) 117
NdeII GATC 3 cut(s) 47, 158, 203
NlaIII CATG 3 cut(s) 32, 122, 310
NlaIV GGNNCC 2 cut(s) 160, 267
NmuCI GTSAC 1 cut(s) 178
NspV TTCGAA 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 175
PkrI GCNGC 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 160, 267
PsuI RGATCY 1 cut(s) 158
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 3 cut(s) 47, 158, 203
SetI ASST 8 cut(s) 98, 126, 131, 175, 236, 299, 322, 329
SfaNI GCATC 1 cut(s) 56
SfuI TTCGAA 1 cut(s) 86
Sse9I AATT 2 cut(s) 82, 188
SsiI CCGC 2 cut(s) 207, 260
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 1 cut(s) 329
TaqI TCGA 1 cut(s) 86
TasI AATT 2 cut(s) 82, 188
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 178
TspRI CASTG 1 cut(s) 187
Van91I CCANNNNNTGG 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.